Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0011885

Physical Location & Seq

Genomic Coordinates Forward (+)

21751588 .. 21757844

Gene Structure 6257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g28770.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGATTCCTTTGAAATCACAGAGTGAGAGAGAAGCGAAAATCAGAAAAGAGAAGAACGAAATGAAGAAAGCAGGAGGGGCCGAAAAGAAAAGGGTGCGAAGGTCCTCCGCTTCTGTTCAAAACGGCGGCCGCGATTCCAACTCCGATACTCCTCCTAGGAAACAAGCAGCCAAGCAGGATGAGTTCCAGTTGTTTGCAGAGAAGGTGAGAGACCATAAGGATTTGGAGTCTAGGTGGGCTGTTCTACAGGAGACACGTGTGGAATATTTCAGAGGGAAGGATTTTGTAAGCTTTTTGAGAAATCATCCCGAGCTCAAAGACATTCTAGGATCAGACAGGAATTTAGAAGCTGAAGATATTGCCAATATCTTACTGAGAAAGAATCTTCTACTGAGGTGTGATCGTGTCGTGAAAACTGTTCGTCCTGGGAAGAAAAAACTCTCTACATGGCCTGCACATTTGGAGATCTTTTCCGAGCAAGGATTTTCTGAGAATGATGCCTTCTTTGCATGGAATTTTGTTAAACGGCGGCCTCTCTGGCAGACGCTTCTCTCATTTTTCTGGCCTGTTTTGACATTGGCAATTTGCTTGTTTCCTGTATATCCCCATCGGTGCAAGCTACTAATACTCTACTCATGTCTTGGGGTCCTGGTGCTATTCTTTTCTCTACTTGGTTTGAGGGGCGCAATATTTGGTGCTCTATACATTATTTTGGGGAAGAGAGTTTGGTTCTTCCCAAACATTCTCGCCGAGGAAGCTACTTTGAGGGAATTGTTCCGTTTCTGCCCCCAGAAAGATGAGGAGGAGCGACCGAAGTGGACAACAAGGATGTTCTATGCGGTACTTGCGGTGCTGGTCATATTGCTGATGAGGCACCATGCCCCTGATGAAGCTGCCAGAGCCAGGTATCAGAAACGTGTATCAAATATAATTGATGATGTTCTTGAGTGGGATCCACGATTGGCCCTTTCTGGGATGATGGAGAAGCAATCTTTGTATAATGAGACAGAACCAAGCAATGCTACTGATGAAGAGCTGACACCACCGGATGGGGTGGGTGCCAAAACTATTATAGAGCAGGATGAGGAAGATGTTAGTGAAATCCTAGATGTTAGTGATGAAAACCTAGACAACAGTGATGAACAAACACATGATCATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005791 GO:0006605 GO:0006612 GO:0006620 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0030867 GO:0031090 GO:0031205 GO:0031207 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0098588 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 map03060 map04141

Pfam Domains

Protein Families

Sec62

Protein Analysis

388

Amino Acids

44.85

Weight (kDa)

6.5

Isoelectric Point (pI)

56.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec62	PF03839	124 - 250	2.1e-09	Translocation protein Sec62

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0011885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20920 AT3G20920
fragaria_vesca	FvH4_3g28770
malus_domestica	MD03G1174500.v1.1 MD11G1192300.v1.1
prunus_persica	Prupe.4G250000_v2.0.a1
pyrus_communis	pycom03g13190 pycom11g16810
rosa_chinensis	RchiOBHm_Chr5g0052271
rosa_laevigata	RLG00000034829
rosa_multiflora	Rmu_sc0009513.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028110
rosa_rugosa	Rorug05G0273200
rosa_samantha	Rh5AG346100 Rh5BG356800 Rh5CG382100 Rh5DG372100
rosa_wichuraiana	Rw5G032640 Rw5G032680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	873, 1058
AccB7I	CCANNNNNTGG	1 cut(s)	1049
AccII	CGCG	1 cut(s)	132
AciI	CCGC	6 cut(s)	108, 126, 130, 529, 839, 848
AclWI	GGATC	3 cut(s)	337, 947, 960
AcoI	YGGCCR	1 cut(s)	127
AcsI	RAATTY	2 cut(s)	340, 514
AcuI	CTGAAG	1 cut(s)	372
AcvI	CACGTG	1 cut(s)	257
AdeI	CACNNNGTG	1 cut(s)	23
AfaI	GTAC	1 cut(s)	843
AfiI	CCNNNNNNNGG	3 cut(s)	903, 972, 1049
AflIII	ACRYGT	3 cut(s)	254, 256, 916
AgsI	TTSAA	2 cut(s)	13, 119
AjnI	CCWGG	3 cut(s)	424, 648, 902
AluBI	AGCT	7 cut(s)	291, 313, 350, 619, 758, 893, 1036
AluI	AGCT	7 cut(s)	291, 313, 350, 619, 758, 893, 1036
Alw21I	GWGCWC	2 cut(s)	315, 700
Alw26I	GTCTC	3 cut(s)	204, 245, 998
AlwI	GGATC	3 cut(s)	337, 947, 960
Ama87I	CYCGRG	1 cut(s)	308
AoxI	GGCC	6 cut(s)	78, 127, 449, 530, 563, 963
ApeKI	GCWGC	2 cut(s)	167, 893
ApoI	RAATTY	2 cut(s)	340, 514
AspA2I	CCTAGG	1 cut(s)	155
AspLEI	GCGC	1 cut(s)	686
AspS9I	GGNCC	4 cut(s)	78, 102, 646, 964
AsuHPI	GGTGA	1 cut(s)	217
AvaI	CYCGRG	1 cut(s)	308
AvaII	GGWCC	2 cut(s)	102, 646
AvrII	CCTAGG	1 cut(s)	155
BamHI	GGATCC	1 cut(s)	952
BanI	GGYRCC	2 cut(s)	873, 1058
BanII	GRGCYC	1 cut(s)	315
BbrPI	CACGTG	1 cut(s)	257
Bbv12I	GWGCWC	2 cut(s)	315, 700
BbvI	GCAGC	2 cut(s)	179, 880
BccI	CCATC	3 cut(s)	615, 973, 1043
BceAI	ACGGC	2 cut(s)	139, 542
BciT130I	CCWGG	3 cut(s)	426, 650, 904
BclI	TGATCA	1 cut(s)	1153
BcoDI	GTCTC	3 cut(s)	204, 245, 998
BfaI	CTAG	5 cut(s)	156, 231, 326, 1106, 1127
BfmI	CTRYAG	1 cut(s)	245
BglI	GCCNNNNNGGC	1 cut(s)	538
BglII	AGATCT	1 cut(s)	465
BisI	GCNGC	5 cut(s)	127, 130, 168, 530, 894
BlnI	CCTAGG	1 cut(s)	155
BlsI	GCNGC	5 cut(s)	128, 131, 169, 531, 895
Bme1390I	CCNGG	3 cut(s)	426, 650, 904
Bme18I	GGWCC	2 cut(s)	102, 646
BmeT110I	CYCGRG	1 cut(s)	308
BmgT120I	GGNCC	4 cut(s)	78, 102, 646, 964
BmiI	GGNNCC	5 cut(s)	79, 647, 875, 954, 1060
BmrFI	CCNGG	3 cut(s)	426, 650, 904
BmsI	GCATC	1 cut(s)	487
BpuEI	CTTGAG	1 cut(s)	965
BsaAI	YACGTR	1 cut(s)	257
BsaI	GGTCTC	1 cut(s)	204
BsaJI	CCNNGG	3 cut(s)	155, 425, 750
BsaWI	WCCGGW	1 cut(s)	1045
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
Bsc4I	CCNNNNNNNGG	3 cut(s)	903, 972, 1049
Bse1I	ACTGG	1 cut(s)	187
Bse3DI	GCAATG	1 cut(s)	1024
BseBI	CCWGG	3 cut(s)	426, 650, 904
BseDI	CCNNGG	3 cut(s)	155, 425, 750
BseGI	GGATG	6 cut(s)	184, 304, 834, 981, 1054, 1087
BseLI	CCNNNNNNNGG	3 cut(s)	903, 972, 1049
BseMI	GCAATG	1 cut(s)	1024
BseMII	CTCAG	3 cut(s)	365, 383, 480
BseNI	ACTGG	1 cut(s)	187
BseRI	GAGGAG	3 cut(s)	141, 815, 818
BseX3I	CGGCCG	1 cut(s)	127
BseXI	GCAGC	2 cut(s)	179, 880
BsgI	GTGCAG	1 cut(s)	438
Bsh1236I	CGCG	1 cut(s)	132
Bsh1285I	CGRYCG	2 cut(s)	130, 812
BshFI	GGCC	6 cut(s)	80, 129, 451, 532, 565, 965
BshNI	GGYRCC	2 cut(s)	873, 1058
BsiEI	CGRYCG	2 cut(s)	130, 812
BsiHKAI	GWGCWC	2 cut(s)	315, 700
BsiHKCI	CYCGRG	1 cut(s)	308
BsiSI	CCGG	1 cut(s)	1046
BslI	CCNNNNNNNGG	3 cut(s)	903, 972, 1049
BsmAI	GTCTC	3 cut(s)	204, 245, 998
BsnI	GGCC	6 cut(s)	80, 129, 451, 532, 565, 965
Bso31I	GGTCTC	1 cut(s)	204
BsoBI	CYCGRG	1 cut(s)	308
Bsp1286I	GDGCHC	2 cut(s)	315, 700
Bsp143I	GATC	5 cut(s)	329, 400, 465, 952, 1153
BspACI	CCGC	6 cut(s)	108, 126, 130, 529, 839, 848
BspANI	GGCC	6 cut(s)	80, 129, 451, 532, 565, 965
BspCNI	CTCAG	3 cut(s)	366, 384, 481
BspFNI	CGCG	1 cut(s)	132
BspLI	GGNNCC	5 cut(s)	79, 647, 875, 954, 1060
BspPI	GGATC	3 cut(s)	337, 947, 960
BspQI	GCTCTTC	1 cut(s)	1026
BspT107I	GGYRCC	2 cut(s)	873, 1058
BspTNI	GGTCTC	1 cut(s)	204
BsrDI	GCAATG	1 cut(s)	1024
BsrI	ACTGG	1 cut(s)	187
BssECI	CCNNGG	3 cut(s)	155, 425, 750
BssMI	GATC	5 cut(s)	329, 400, 465, 952, 1153
BssT1I	CCWWGG	1 cut(s)	155
Bst2UI	CCWGG	3 cut(s)	426, 650, 904
Bst4CI	ACNGT	2 cut(s)	418, 1136
Bst6I	CTCTTC	2 cut(s)	713, 1026
BstBAI	YACGTR	1 cut(s)	257
BstC8I	GCNNGC	2 cut(s)	453, 617
BstDEI	CTNAG	3 cut(s)	374, 392, 489
BstF5I	GGATG	6 cut(s)	184, 304, 834, 981, 1054, 1087
BstFNI	CGCG	1 cut(s)	132
BstHHI	GCGC	1 cut(s)	686
BstKTI	GATC	5 cut(s)	332, 403, 468, 955, 1156
BstMAI	GTCTC	3 cut(s)	204, 245, 998
BstMBI	GATC	5 cut(s)	329, 400, 465, 952, 1153
BstMCI	CGRYCG	2 cut(s)	130, 812
BstMWI	GCNNNNNNNGC	7 cut(s)	77, 506, 538, 755, 845, 871, 899
BstNI	CCWGG	3 cut(s)	426, 650, 904
BstSCI	CCNGG	3 cut(s)	424, 648, 902
BstSFI	CTRYAG	1 cut(s)	245
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	2 cut(s)	179, 880
BstX2I	RGATCY	2 cut(s)	465, 952
BstYI	RGATCY	2 cut(s)	465, 952
BstZI	CGGCCG	1 cut(s)	127
BsuRI	GGCC	6 cut(s)	80, 129, 451, 532, 565, 965
BtsCI	GGATG	6 cut(s)	184, 304, 834, 981, 1054, 1087
BtsIMutI	CAGTG	1 cut(s)	1141
Cac8I	GCNNGC	2 cut(s)	453, 617
CciNI	GCGGCCGC	1 cut(s)	127
CfoI	GCGC	1 cut(s)	686
Cfr13I	GGNCC	4 cut(s)	78, 102, 646, 964
CseI	GACGC	1 cut(s)	553
Csp6I	GTAC	1 cut(s)	842
CviAII	CATG	5 cut(s)	447, 510, 636, 878, 1151
CviQI	GTAC	1 cut(s)	842
DdeI	CTNAG	3 cut(s)	374, 392, 489
DpnI	GATC	5 cut(s)	331, 402, 467, 954, 1155
DpnII	GATC	5 cut(s)	329, 400, 465, 952, 1153
DraIII	CACNNNGTG	1 cut(s)	23
EaeI	YGGCCR	1 cut(s)	127
EagI	CGGCCG	1 cut(s)	127
Eam1104I	CTCTTC	2 cut(s)	713, 1026
EarI	CTCTTC	2 cut(s)	713, 1026
Ecl136II	GAGCTC	1 cut(s)	313
EclXI	CGGCCG	1 cut(s)	127
Eco130I	CCWWGG	1 cut(s)	155
Eco24I	GRGCYC	1 cut(s)	315
Eco31I	GGTCTC	1 cut(s)	204
Eco47I	GGWCC	2 cut(s)	102, 646
Eco52I	CGGCCG	1 cut(s)	127
Eco53kI	GAGCTC	1 cut(s)	313
Eco57I	CTGAAG	1 cut(s)	372
Eco72I	CACGTG	1 cut(s)	257
Eco88I	CYCGRG	1 cut(s)	308
EcoICRI	GAGCTC	1 cut(s)	313
EcoO109I	RGGNCCY	2 cut(s)	102, 646
EcoRII	CCWGG	3 cut(s)	424, 648, 902
EcoT14I	CCWWGG	1 cut(s)	155
EcoT38I	GRGCYC	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	155
FaeI	CATG	5 cut(s)	450, 513, 639, 881, 1154
FatI	CATG	5 cut(s)	446, 509, 635, 877, 1150
FbaI	TGATCA	1 cut(s)	1153
Fnu4HI	GCNGC	5 cut(s)	127, 130, 168, 530, 894
FokI	GGATG	6 cut(s)	191, 291, 841, 988, 1061, 1094
FriOI	GRGCYC	1 cut(s)	315
Fsp4HI	GCNGC	5 cut(s)	127, 130, 168, 530, 894
FspBI	CTAG	5 cut(s)	156, 231, 326, 1106, 1127
GlaI	GCGC	1 cut(s)	685
GluI	GCNGC	5 cut(s)	127, 130, 168, 530, 894
HaeIII	GGCC	6 cut(s)	80, 129, 451, 532, 565, 965
HapII	CCGG	1 cut(s)	1046
HgaI	GACGC	1 cut(s)	553
HhaI	GCGC	1 cut(s)	686
Hin1II	CATG	5 cut(s)	450, 513, 639, 881, 1154
Hin6I	GCGC	1 cut(s)	684
HinP1I	GCGC	1 cut(s)	684
HindIII	AAGCTT	1 cut(s)	289
HinfI	GANTC	4 cut(s)	4, 134, 227, 382
HpaII	CCGG	1 cut(s)	1046
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	1 cut(s)	819
Hpy188I	TCNGA	7 cut(s)	44, 145, 272, 334, 475, 490, 912
Hpy188III	TCNNGA	3 cut(s)	308, 409, 944
Hpy8I	GTNNAC	1 cut(s)	819
HpyAV	CCTTC	4 cut(s)	93, 196, 271, 511
HpyCH4III	ACNGT	2 cut(s)	418, 1136
HpyCH4IV	ACGT	2 cut(s)	256, 916
HpyCH4V	TGCA	4 cut(s)	197, 455, 509, 615
HpyF10VI	GCNNNNNNNGC	7 cut(s)	77, 506, 538, 755, 845, 871, 899
HpyF3I	CTNAG	3 cut(s)	374, 392, 489
HpySE526I	ACGT	2 cut(s)	256, 916
Hsp92II	CATG	5 cut(s)	450, 513, 639, 881, 1154
HspAI	GCGC	1 cut(s)	684
Ksp22I	TGATCA	1 cut(s)	1153
Kzo9I	GATC	5 cut(s)	329, 400, 465, 952, 1153
LguI	GCTCTTC	1 cut(s)	1026
LmnI	GCTCC	1 cut(s)	805
Lsp1109I	GCAGC	2 cut(s)	179, 880
LweI	GCATC	1 cut(s)	487
MaeI	CTAG	5 cut(s)	156, 231, 326, 1106, 1127
MaeII	ACGT	2 cut(s)	256, 916
MalI	GATC	5 cut(s)	331, 402, 467, 954, 1155
MboI	GATC	5 cut(s)	329, 400, 465, 952, 1153
MboII	GAAGA	9 cut(s)	64, 76, 365, 377, 442, 724, 730, 1043, 1100
MflI	RGATCY	2 cut(s)	465, 952
MhlI	GDGCHC	2 cut(s)	315, 700
MluCI	AATT	5 cut(s)	340, 514, 582, 770, 930
MlyI	GAGTC	1 cut(s)	236
MmeI	TCCRAC	1 cut(s)	162
MseI	TTAA	1 cut(s)	522
MspI	CCGG	1 cut(s)	1046
MspR9I	CCNGG	3 cut(s)	426, 650, 904
MvaI	CCWGG	3 cut(s)	426, 650, 904
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	7 cut(s)	77, 506, 538, 755, 845, 871, 899
NdeII	GATC	5 cut(s)	329, 400, 465, 952, 1153
NlaIII	CATG	5 cut(s)	450, 513, 639, 881, 1154
NlaIV	GGNNCC	5 cut(s)	79, 647, 875, 954, 1060
NmeAIII	GCCGAG	1 cut(s)	775
NotI	GCGGCCGC	1 cut(s)	127
PciSI	GCTCTTC	1 cut(s)	1026
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PfeI	GAWTC	3 cut(s)	4, 134, 382
PflMI	CCANNNNNTGG	1 cut(s)	1049
PkrI	GCNGC	5 cut(s)	128, 131, 169, 531, 895
PleI	GAGTC	1 cut(s)	235
PmaCI	CACGTG	1 cut(s)	257
PmlI	CACGTG	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	235
Ppu21I	YACGTR	1 cut(s)	257
PpuMI	RGGWCCY	2 cut(s)	102, 646
Psp124BI	GAGCTC	1 cut(s)	315
Psp5II	RGGWCCY	2 cut(s)	102, 646
Psp6I	CCWGG	3 cut(s)	424, 648, 902
PspCI	CACGTG	1 cut(s)	257
PspGI	CCWGG	3 cut(s)	424, 648, 902
PspN4I	GGNNCC	5 cut(s)	79, 647, 875, 954, 1060
PspPI	GGNCC	4 cut(s)	78, 102, 646, 964
PspPPI	RGGWCCY	2 cut(s)	102, 646
PsuI	RGATCY	2 cut(s)	465, 952
RsaI	GTAC	1 cut(s)	843
RsaNI	GTAC	1 cut(s)	842
SacI	GAGCTC	1 cut(s)	315
SapI	GCTCTTC	1 cut(s)	1026
SaqAI	TTAA	1 cut(s)	522
SatI	GCNGC	5 cut(s)	127, 130, 168, 530, 894
Sau3AI	GATC	5 cut(s)	329, 400, 465, 952, 1153
Sau96I	GGNCC	4 cut(s)	78, 102, 646, 964
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	3 cut(s)	426, 650, 904
SduI	GDGCHC	2 cut(s)	315, 700
SfaNI	GCATC	1 cut(s)	487
SfcI	CTRYAG	1 cut(s)	245
SinI	GGWCC	2 cut(s)	102, 646
SmlI	CTYRAG	1 cut(s)	944
SmoI	CTYRAG	1 cut(s)	944
Sse9I	AATT	5 cut(s)	340, 514, 582, 770, 930
SsiI	CCGC	6 cut(s)	108, 126, 130, 529, 839, 848
SspI	AATATT	2 cut(s)	266, 690
SspMI	CTAG	5 cut(s)	156, 231, 326, 1106, 1127
SstI	GAGCTC	1 cut(s)	315
StyD4I	CCNGG	3 cut(s)	424, 648, 902
StyI	CCWWGG	1 cut(s)	155
TaaI	ACNGT	2 cut(s)	418, 1136
TaiI	ACGT	2 cut(s)	259, 919
TaqII	GACCGA	1 cut(s)	826
TasI	AATT	5 cut(s)	340, 514, 582, 770, 930
TauI	GCSGC	3 cut(s)	129, 132, 532
TfiI	GAWTC	3 cut(s)	4, 134, 382
Tru1I	TTAA	1 cut(s)	522
Tru9I	TTAA	1 cut(s)	522
TscAI	CASTG	1 cut(s)	1141
TseI	GCWGC	2 cut(s)	167, 893
TspDTI	ATGAA	5 cut(s)	77, 903, 1044, 1134, 1155
TspGWI	ACGGA	1 cut(s)	767
TspRI	CASTG	1 cut(s)	1141
Van91I	CCANNNNNTGG	1 cut(s)	1049
VpaK11BI	GGWCC	2 cut(s)	102, 646
XapI	RAATTY	2 cut(s)	340, 514
XmaJI	CCTAGG	1 cut(s)	155
XspI	CTAG	5 cut(s)	156, 231, 326, 1106, 1127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.