Rroxscaffold_1G00028110

translocation protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0011885
Physical Location & Seq
Reverse (-)
35799081 .. 35805580
6500 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00028110.1

Sequence Viewer

Length: 1107 bp
ATGAAGAAAACTGGAGGTGCAGAAAAGAAACGGGTCCGAAGGTCCTCTGCAGCTCTTCAGAACGGCGGCCGGGATTCCAACTCCGACACCCCTCCTAGGAAACAAGCAGCCAAGCAGGATGAGTTCCAGTTGTTTGCAGAGAAGGTGAGAGACCATAAGGATTTGGTGTCTAGGTGGGCTGTTCTACAGGAGACACGGGTAGAATATTTCAGAGGGAAGGATTTTGTAAGCTTTTTGAGAAATCATCCAGAGCTCAAGGACATTCTAGAATCAGATAGGAATTTAGAAGCTGAAGATATTGCCAATATCTTATTGAGAAAGAATCTTCTAGTGCGGTGCGATCGTGTTGTGAAAACTGTTCGTCCTGGAAAGAAGAAATTGTCTACATGGCCTGCACATTTGGAGATCTTTTCCGAGCAAGGATTTTCTGAGAATGACGCCTTCTTTGCATGGACTTTTGTTAAACGGCGGCCTCTCTGGCAGACGCTTCTCTCATTTTTCTGGCCTGTTGTGACATTGGCAATTTGCTTGTTTCCTGTATACCCCCATCGGTGCAAGCTACTAATACTCTACTCGTGTCTCGGGGTCCTGCTGCTTTTCCTTTCTCTACTTGTTTTGAGGGGTGCAATATTTGGTGCTCTATACATTGTTTTGGGGAAGCGAGTTTGGTTTTTCCCAAACATTCTCGCCGAGGAAGCCACTTTGAGGGAACTGTTCCGTTTCTGCCCCCAGAAAGATGAGGAGGAGCGACCAAAGTGGACAACAAGGATCTTCTATGCGGTACTTGCGGTGCTGGTCATATTGCTGATGAGGCACCATGCCCCTGATGAAGCTGCCAGAGCCAGGTATCAGAAACGTGTATCGAATATAATCGATGATGTTCTTGAGTGGGATCCAAGATTGGCCCTCTCTGGGATGATGGAGAAGCAATCGTTGTTTAATGAGACAGAGCCAAGCAATGCTACTGATGAAGAGGTGACACCACCGGCGGATGGGGTGGGTGCAAATACTATCATAGAGCAGGACGAGGAAGATGTTAGTGAAATCCTAGACGTTAGTGATGAAAAGCTAGACAACAGTGATGAACAAACACATGATCATATATGA

Protein Analysis

368

Amino Acids

42.51

Weight (kDa)

6.13

Isoelectric Point (pI)

55.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec62 PF03839 96 - 230 1.7e-13 Translocation protein Sec62
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011885)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20920 AT3G20920
fragaria_vesca FvH4_3g28770
malus_domestica MD03G1174500.v1.1 MD11G1192300.v1.1
prunus_persica Prupe.4G250000_v2.0.a1
pyrus_communis pycom03g13190 pycom11g16810
rosa_chinensis RchiOBHm_Chr5g0052271
rosa_laevigata RLG00000034829
rosa_multiflora Rmu_sc0009513.1_g000001
rosa_roxburghii Rroxscaffold_1G00028110
rosa_rugosa Rorug05G0273200
rosa_samantha Rh5AG346100 Rh5BG356800 Rh5CG382100 Rh5DG372100
rosa_wichuraiana Rw5G032640 Rw5G032680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 813
AccI GTMKAC 2 cut(s) 383, 540
AciI CCGC 6 cut(s) 66, 334, 469, 779, 788, 989
AclWI GGATC 3 cut(s) 776, 887, 900
AcoI YGGCCR 1 cut(s) 67
AcsI RAATTY 1 cut(s) 280
AcuI CTGAAG 2 cut(s) 41, 312
AcyI GRCGYC 1 cut(s) 438
AfaI GTAC 1 cut(s) 783
AfiI CCNNNNNNNGG 5 cut(s) 96, 705, 843, 912, 992
AflIII ACRYGT 1 cut(s) 856
AjnI CCWGG 2 cut(s) 364, 842
AluBI AGCT 7 cut(s) 53, 231, 253, 290, 559, 833, 1069
AluI AGCT 7 cut(s) 53, 231, 253, 290, 559, 833, 1069
Alw21I GWGCWC 2 cut(s) 255, 640
Alw26I GTCTC 4 cut(s) 144, 185, 584, 938
AlwI GGATC 3 cut(s) 776, 887, 900
Ama87I CYCGRG 1 cut(s) 581
AoxI GGCC 5 cut(s) 67, 389, 470, 503, 903
ApeKI GCWGC 4 cut(s) 50, 107, 592, 833
ApoI RAATTY 1 cut(s) 280
ArsI GACNNNNNNTTYG 2 cut(s) 428, 460
AspA2I CCTAGG 1 cut(s) 95
AspS9I GGNCC 4 cut(s) 34, 42, 586, 904
AsuC2I CCSGG 1 cut(s) 71
AsuHPI GGTGA 2 cut(s) 157, 988
AvaI CYCGRG 1 cut(s) 581
AvaII GGWCC 3 cut(s) 34, 42, 586
AvrII CCTAGG 1 cut(s) 95
BamHI GGATCC 1 cut(s) 892
BanI GGYRCC 1 cut(s) 813
BanII GRGCYC 1 cut(s) 255
BauI CACGAG 1 cut(s) 574
Bbv12I GWGCWC 2 cut(s) 255, 640
BbvI GCAGC 4 cut(s) 62, 119, 579, 820
BccI CCATC 3 cut(s) 555, 913, 986
BceAI ACGGC 2 cut(s) 79, 482
BciT130I CCWGG 2 cut(s) 366, 844
BclI TGATCA 1 cut(s) 1096
BcnI CCSGG 1 cut(s) 71
BcoDI GTCTC 4 cut(s) 144, 185, 584, 938
BfaI CTAG 6 cut(s) 96, 171, 266, 329, 1049, 1070
BfmI CTRYAG 2 cut(s) 48, 185
BglI GCCNNNNNGGC 1 cut(s) 478
BglII AGATCT 1 cut(s) 405
BisI GCNGC 6 cut(s) 51, 67, 108, 470, 593, 834
BlnI CCTAGG 1 cut(s) 95
BlsI GCNGC 6 cut(s) 52, 68, 109, 471, 594, 835
Bme1390I CCNGG 3 cut(s) 71, 366, 844
Bme18I GGWCC 3 cut(s) 34, 42, 586
BmeT110I CYCGRG 1 cut(s) 581
BmgT120I GGNCC 4 cut(s) 34, 42, 586, 904
BmiI GGNNCC 4 cut(s) 35, 587, 815, 894
BmrFI CCNGG 3 cut(s) 71, 366, 844
BpmI CTGGAG 1 cut(s) 33
BpuEI CTTGAG 2 cut(s) 239, 905
BpuMI CCSGG 1 cut(s) 71
Bsa29I ATCGAT 1 cut(s) 873
BsaHI GRCGYC 1 cut(s) 438
BsaI GGTCTC 1 cut(s) 144
BsaJI CCNNGG 2 cut(s) 95, 690
Bsc4I CCNNNNNNNGG 5 cut(s) 96, 705, 843, 912, 992
Bse118I RCCGGY 1 cut(s) 985
Bse1I ACTGG 2 cut(s) 16, 127
Bse3DI GCAATG 1 cut(s) 964
BseBI CCWGG 2 cut(s) 366, 844
BseCI ATCGAT 1 cut(s) 873
BseDI CCNNGG 2 cut(s) 95, 690
BseGI GGATG 4 cut(s) 124, 244, 921, 997
BseLI CCNNNNNNNGG 5 cut(s) 96, 705, 843, 912, 992
BseMI GCAATG 1 cut(s) 964
BseMII CTCAG 1 cut(s) 420
BseNI ACTGG 2 cut(s) 16, 127
BseRI GAGGAG 2 cut(s) 755, 758
BseX3I CGGCCG 1 cut(s) 67
BseXI GCAGC 4 cut(s) 62, 119, 579, 820
BsgI GTGCAG 2 cut(s) 39, 378
Bsh1285I CGRYCG 2 cut(s) 70, 343
BshFI GGCC 5 cut(s) 69, 391, 472, 505, 905
BshNI GGYRCC 1 cut(s) 813
BshVI ATCGAT 1 cut(s) 873
BsiEI CGRYCG 2 cut(s) 70, 343
BsiHKAI GWGCWC 2 cut(s) 255, 640
BsiHKCI CYCGRG 1 cut(s) 581
BsiSI CCGG 2 cut(s) 70, 986
BslI CCNNNNNNNGG 5 cut(s) 96, 705, 843, 912, 992
BsmAI GTCTC 4 cut(s) 144, 185, 584, 938
BsnI GGCC 5 cut(s) 69, 391, 472, 505, 905
Bso31I GGTCTC 1 cut(s) 144
BsoBI CYCGRG 1 cut(s) 581
Bsp1286I GDGCHC 2 cut(s) 255, 640
Bsp143I GATC 5 cut(s) 340, 405, 768, 892, 1096
BspACI CCGC 6 cut(s) 66, 334, 469, 779, 788, 989
BspANI GGCC 5 cut(s) 69, 391, 472, 505, 905
BspCNI CTCAG 1 cut(s) 421
BspDI ATCGAT 1 cut(s) 873
BspLI GGNNCC 4 cut(s) 35, 587, 815, 894
BspMAI CTGCAG 1 cut(s) 52
BspPI GGATC 3 cut(s) 776, 887, 900
BspQI GCTCTTC 1 cut(s) 60
BspT107I GGYRCC 1 cut(s) 813
BspTNI GGTCTC 1 cut(s) 144
BsrDI GCAATG 1 cut(s) 964
BsrFI RCCGGY 1 cut(s) 985
BsrI ACTGG 2 cut(s) 16, 127
BssAI RCCGGY 1 cut(s) 985
BssECI CCNNGG 2 cut(s) 95, 690
BssMI GATC 5 cut(s) 340, 405, 768, 892, 1096
BssNAI GTATAC 1 cut(s) 541
BssNI GRCGYC 1 cut(s) 438
BssSI CACGAG 1 cut(s) 574
BssT1I CCWWGG 1 cut(s) 95
Bst1107I GTATAC 1 cut(s) 541
Bst2BI CACGAG 1 cut(s) 574
Bst2UI CCWGG 2 cut(s) 366, 844
Bst4CI ACNGT 3 cut(s) 358, 714, 1079
Bst6I CTCTTC 2 cut(s) 60, 966
BstACI GRCGYC 1 cut(s) 438
BstC8I GCNNGC 2 cut(s) 393, 557
BstDEI CTNAG 1 cut(s) 429
BstF5I GGATG 4 cut(s) 124, 244, 921, 997
BstKTI GATC 5 cut(s) 343, 408, 771, 895, 1099
BstMAI GTCTC 4 cut(s) 144, 185, 584, 938
BstMBI GATC 5 cut(s) 340, 405, 768, 892, 1096
BstMCI CGRYCG 2 cut(s) 70, 343
BstMWI GCNNNNNNNGC 6 cut(s) 446, 478, 695, 785, 811, 839
BstNI CCWGG 2 cut(s) 366, 844
BstSCI CCNGG 3 cut(s) 69, 364, 842
BstSFI CTRYAG 2 cut(s) 48, 185
BstV1I GCAGC 4 cut(s) 62, 119, 579, 820
BstX2I RGATCY 3 cut(s) 405, 768, 892
BstYI RGATCY 3 cut(s) 405, 768, 892
BstZ17I GTATAC 1 cut(s) 541
BstZI CGGCCG 1 cut(s) 67
Bsu15I ATCGAT 1 cut(s) 873
BsuRI GGCC 5 cut(s) 69, 391, 472, 505, 905
BsuTUI ATCGAT 1 cut(s) 873
BtsCI GGATG 4 cut(s) 124, 244, 921, 997
BtsIMutI CAGTG 1 cut(s) 1084
Cac8I GCNNGC 2 cut(s) 393, 557
Cfr10I RCCGGY 1 cut(s) 985
Cfr13I GGNCC 4 cut(s) 34, 42, 586, 904
ClaI ATCGAT 1 cut(s) 873
CseI GACGC 2 cut(s) 446, 493
Csp6I GTAC 1 cut(s) 782
CviAII CATG 4 cut(s) 387, 450, 818, 1094
CviQI GTAC 1 cut(s) 782
DdeI CTNAG 1 cut(s) 429
DpnI GATC 5 cut(s) 342, 407, 770, 894, 1098
DpnII GATC 5 cut(s) 340, 405, 768, 892, 1096
EaeI YGGCCR 1 cut(s) 67
EagI CGGCCG 1 cut(s) 67
Eam1104I CTCTTC 2 cut(s) 60, 966
EarI CTCTTC 2 cut(s) 60, 966
EciI GGCGGA 1 cut(s) 1004
Ecl136II GAGCTC 1 cut(s) 253
EclXI CGGCCG 1 cut(s) 67
Eco130I CCWWGG 1 cut(s) 95
Eco24I GRGCYC 1 cut(s) 255
Eco31I GGTCTC 1 cut(s) 144
Eco47I GGWCC 3 cut(s) 34, 42, 586
Eco52I CGGCCG 1 cut(s) 67
Eco53kI GAGCTC 1 cut(s) 253
Eco57I CTGAAG 2 cut(s) 41, 312
Eco88I CYCGRG 1 cut(s) 581
EcoICRI GAGCTC 1 cut(s) 253
EcoO109I RGGNCCY 2 cut(s) 42, 586
EcoRII CCWGG 2 cut(s) 364, 842
EcoT14I CCWWGG 1 cut(s) 95
EcoT38I GRGCYC 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 95
FaeI CATG 4 cut(s) 390, 453, 821, 1097
FatI CATG 4 cut(s) 386, 449, 817, 1093
FbaI TGATCA 1 cut(s) 1096
FblI GTMKAC 2 cut(s) 383, 540
Fnu4HI GCNGC 6 cut(s) 51, 67, 108, 470, 593, 834
FokI GGATG 4 cut(s) 131, 231, 928, 1004
FriOI GRGCYC 1 cut(s) 255
Fsp4HI GCNGC 6 cut(s) 51, 67, 108, 470, 593, 834
FspBI CTAG 6 cut(s) 96, 171, 266, 329, 1049, 1070
GluI GCNGC 6 cut(s) 51, 67, 108, 470, 593, 834
GsuI CTGGAG 1 cut(s) 33
HaeIII GGCC 5 cut(s) 69, 391, 472, 505, 905
HapII CCGG 2 cut(s) 70, 986
HgaI GACGC 2 cut(s) 446, 493
Hin1I GRCGYC 1 cut(s) 438
Hin1II CATG 4 cut(s) 390, 453, 821, 1097
HindIII AAGCTT 1 cut(s) 229
HinfI GANTC 3 cut(s) 74, 269, 322
HpaII CCGG 2 cut(s) 70, 986
HphI GGTGA 2 cut(s) 157, 988
Hpy166II GTNNAC 3 cut(s) 384, 541, 759
Hpy188I TCNGA 8 cut(s) 38, 60, 85, 212, 274, 415, 430, 852
Hpy188III TCNNGA 3 cut(s) 248, 266, 884
Hpy8I GTNNAC 3 cut(s) 384, 541, 759
HpyAV CCTTC 4 cut(s) 33, 136, 211, 451
HpyCH4III ACNGT 3 cut(s) 358, 714, 1079
HpyCH4IV ACGT 2 cut(s) 856, 1053
HpyCH4V TGCA 8 cut(s) 20, 50, 137, 395, 449, 555, 626, 1004
HpyF10VI GCNNNNNNNGC 6 cut(s) 446, 478, 695, 785, 811, 839
HpyF3I CTNAG 1 cut(s) 429
HpySE526I ACGT 2 cut(s) 856, 1053
Hsp92I GRCGYC 1 cut(s) 438
Hsp92II CATG 4 cut(s) 390, 453, 821, 1097
Ksp22I TGATCA 1 cut(s) 1096
Kzo9I GATC 5 cut(s) 340, 405, 768, 892, 1096
LguI GCTCTTC 1 cut(s) 60
LmnI GCTCC 1 cut(s) 745
Lsp1109I GCAGC 4 cut(s) 62, 119, 579, 820
MaeI CTAG 6 cut(s) 96, 171, 266, 329, 1049, 1070
MaeII ACGT 2 cut(s) 856, 1053
MaeIII GTNAC 2 cut(s) 511, 976
MalI GATC 5 cut(s) 342, 407, 770, 894, 1098
MboI GATC 5 cut(s) 340, 405, 768, 892, 1096
MboII GAAGA 8 cut(s) 16, 47, 305, 317, 385, 763, 983, 1043
MflI RGATCY 3 cut(s) 405, 768, 892
MhlI GDGCHC 2 cut(s) 255, 640
MluCI AATT 3 cut(s) 280, 377, 522
MmeI TCCRAC 2 cut(s) 102, 108
MseI TTAA 2 cut(s) 462, 939
MspI CCGG 2 cut(s) 70, 986
MspR9I CCNGG 3 cut(s) 71, 366, 844
MvaI CCWGG 2 cut(s) 366, 844
MwoI GCNNNNNNNGC 6 cut(s) 446, 478, 695, 785, 811, 839
NciI CCSGG 1 cut(s) 71
NdeII GATC 5 cut(s) 340, 405, 768, 892, 1096
NlaIII CATG 4 cut(s) 390, 453, 821, 1097
NlaIV GGNNCC 4 cut(s) 35, 587, 815, 894
NmeAIII GCCGAG 1 cut(s) 715
NmuCI GTSAC 2 cut(s) 511, 976
PciSI GCTCTTC 1 cut(s) 60
PfeI GAWTC 3 cut(s) 74, 269, 322
PfoI TCCNGGA 1 cut(s) 364
PkrI GCNGC 6 cut(s) 52, 68, 109, 471, 594, 835
Ple19I CGATCG 1 cut(s) 343
PpuMI RGGWCCY 2 cut(s) 42, 586
Psp124BI GAGCTC 1 cut(s) 255
Psp5II RGGWCCY 2 cut(s) 42, 586
Psp6I CCWGG 2 cut(s) 364, 842
PspGI CCWGG 2 cut(s) 364, 842
PspN4I GGNNCC 4 cut(s) 35, 587, 815, 894
PspPI GGNCC 4 cut(s) 34, 42, 586, 904
PspPPI RGGWCCY 2 cut(s) 42, 586
PstI CTGCAG 1 cut(s) 52
PsuI RGATCY 3 cut(s) 405, 768, 892
PvuI CGATCG 1 cut(s) 343
RsaI GTAC 1 cut(s) 783
RsaNI GTAC 1 cut(s) 782
SacI GAGCTC 1 cut(s) 255
SapI GCTCTTC 1 cut(s) 60
SaqAI TTAA 2 cut(s) 462, 939
SatI GCNGC 6 cut(s) 51, 67, 108, 470, 593, 834
Sau3AI GATC 5 cut(s) 340, 405, 768, 892, 1096
Sau96I GGNCC 4 cut(s) 34, 42, 586, 904
ScrFI CCNGG 3 cut(s) 71, 366, 844
SduI GDGCHC 2 cut(s) 255, 640
SfcI CTRYAG 2 cut(s) 48, 185
SgrAI CRCCGGYG 1 cut(s) 985
SinI GGWCC 3 cut(s) 34, 42, 586
SmlI CTYRAG 2 cut(s) 254, 884
SmoI CTYRAG 2 cut(s) 254, 884
Sse9I AATT 3 cut(s) 280, 377, 522
SsiI CCGC 6 cut(s) 66, 334, 469, 779, 788, 989
SspI AATATT 2 cut(s) 206, 630
SspMI CTAG 6 cut(s) 96, 171, 266, 329, 1049, 1070
SstI GAGCTC 1 cut(s) 255
StyD4I CCNGG 3 cut(s) 69, 364, 842
StyI CCWWGG 1 cut(s) 95
TaaI ACNGT 3 cut(s) 358, 714, 1079
TaiI ACGT 2 cut(s) 859, 1056
TaqI TCGA 2 cut(s) 863, 873
TasI AATT 3 cut(s) 280, 377, 522
TauI GCSGC 2 cut(s) 69, 472
TfiI GAWTC 3 cut(s) 74, 269, 322
Tru1I TTAA 2 cut(s) 462, 939
Tru9I TTAA 2 cut(s) 462, 939
TscAI CASTG 1 cut(s) 1084
TseFI GTSAC 2 cut(s) 511, 976
TseI GCWGC 4 cut(s) 50, 107, 592, 833
Tsp45I GTSAC 2 cut(s) 511, 976
TspDTI ATGAA 5 cut(s) 17, 843, 984, 1077, 1098
TspGWI ACGGA 1 cut(s) 707
TspRI CASTG 1 cut(s) 1084
VpaK11BI GGWCC 3 cut(s) 34, 42, 586
XapI RAATTY 1 cut(s) 280
XbaI TCTAGA 1 cut(s) 265
XmaJI CCTAGG 1 cut(s) 95
XmiI GTMKAC 2 cut(s) 383, 540
XspI CTAG 6 cut(s) 96, 171, 266, 329, 1049, 1070
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.