Rh5CG382100

translocation protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0011885
Physical Location & Seq
Forward (+)
50007753 .. 50014616
6864 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG382100.1

Sequence Viewer

Length: 1134 bp
ATGCAATGTCTGTGTGCAATGATGTTGATTTTAGTTGGAAAGCTGTGTTCTGCAAACTGGTTTTCATTTTCAGAGCCTCTGCTTATATTTTCTTTGTTTTCTGATTGCCACATGATTTTCTTTCAGAAACAAGCAGCCAAGCAGGATGAGTTCCAGTTGTTTGCAGAGAAGGTGAGAGACCACAAGGATTTGGTGTCTAGGTGGGCTGTTCTACAGGAGACACGGGTAGAATATTTCAGAGGGAAGGATTTTGTAAGCTTTTTGAGAAATCATCCAGAGCTCAAAGACATTCTAGAATCAGATAGGAATTTAGAAGCTGAAGATATTGCCAATATCTTACTGAGAAAGAATCTTCTAGTGCGGTGTGATCGTGTTGTGAAAACTGTTCGTCCTGGGAAGAAGAAATTGTCTACATGGCCTGCACATTTGGAGATCTTTTCAGAGCAAGGATTTTCTGAGAATGACGCCTTCTTTGCATGGACTTTTGTTAAACGGCGGCCTCTCTGGCAGACGCTTCTTTCATTTTTCTGGCCTGTTGTGACATTGGCAATTTGCTTGTTTCCTGTATACCCCCATCGGTGCAAGCTACTAATACTCTACTCGTGTCTCGGGGTCCTGCTGCTTTTCCTTTCTCTACTTGTTTTGAGGGGTGCAATATTTGGTGCTCTATACATTGTTTTGGGGAAGCGAGTTTGGTTTTTCCCAAACATTCTCGCCGAGGAAGCCACTTTGAGGGAACTGTTCCGTTTCTGTCCCCAGAAAGATGAGGAGGAGCGACCAAAGTGGACAACAAGGATCTTCTATGCGGTACTTGCAGTGCTGGTCATATTGCTGATGAGGCACCATGCTCCTGATGAAGCTGCCAGAGCCAGGTATCAGAAACGTGTATCAAATATAATTGATGATGTTCTTGAGTGGGATCCAAGATTGGCCCTCTCTGGGATGATGGAGAAGCAATCTTTGTTTAATGAGACAGAGCCAAGCAATGCTACTGATGAAGAGGTGACACCACCGGCGGATGGGGTGGGTGCAAAAACTATCATAGAGCAGGACGAGGAAGATGTTAGTGAAATCCTAGACGTTAGTGATGAAAAGCTAGACAACAGTGATGAACAAACACATGATCATATATGA

Protein Analysis

377

Amino Acids

43.84

Weight (kDa)

5.51

Isoelectric Point (pI)

51.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec62 PF03839 106 - 239 6.5e-14 Translocation protein Sec62
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011885)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20920 AT3G20920
fragaria_vesca FvH4_3g28770
malus_domestica MD03G1174500.v1.1 MD11G1192300.v1.1
prunus_persica Prupe.4G250000_v2.0.a1
pyrus_communis pycom03g13190 pycom11g16810
rosa_chinensis RchiOBHm_Chr5g0052271
rosa_laevigata RLG00000034829
rosa_multiflora Rmu_sc0009513.1_g000001
rosa_roxburghii Rroxscaffold_1G00028110
rosa_rugosa Rorug05G0273200
rosa_samantha Rh5AG346100 Rh5BG356800 Rh5CG382100 Rh5DG372100
rosa_wichuraiana Rw5G032640 Rw5G032680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 840
AccI GTMKAC 2 cut(s) 410, 567
AciI CCGC 4 cut(s) 361, 496, 806, 1016
AclWI GGATC 3 cut(s) 803, 914, 927
AcsI RAATTY 1 cut(s) 307
AcuI CTGAAG 1 cut(s) 339
AcyI GRCGYC 1 cut(s) 465
AfaI GTAC 1 cut(s) 810
AfiI CCNNNNNNNGG 4 cut(s) 732, 870, 939, 1019
AflIII ACRYGT 1 cut(s) 883
AjnI CCWGG 2 cut(s) 391, 869
AluBI AGCT 7 cut(s) 43, 258, 280, 317, 586, 860, 1096
AluI AGCT 7 cut(s) 43, 258, 280, 317, 586, 860, 1096
Alw21I GWGCWC 2 cut(s) 282, 667
Alw26I GTCTC 4 cut(s) 171, 212, 611, 965
AlwI GGATC 3 cut(s) 803, 914, 927
Ama87I CYCGRG 1 cut(s) 608
AoxI GGCC 4 cut(s) 416, 497, 530, 930
ApeKI GCWGC 3 cut(s) 134, 619, 860
ApoI RAATTY 1 cut(s) 307
ArsI GACNNNNNNTTYG 2 cut(s) 455, 487
AspS9I GGNCC 2 cut(s) 613, 931
AsuHPI GGTGA 2 cut(s) 184, 1015
AvaI CYCGRG 1 cut(s) 608
AvaII GGWCC 1 cut(s) 613
BamHI GGATCC 1 cut(s) 919
BanI GGYRCC 1 cut(s) 840
BanII GRGCYC 1 cut(s) 282
BauI CACGAG 1 cut(s) 601
Bbv12I GWGCWC 2 cut(s) 282, 667
BbvI GCAGC 3 cut(s) 146, 606, 847
BccI CCATC 3 cut(s) 582, 940, 1013
BceAI ACGGC 1 cut(s) 509
BciT130I CCWGG 2 cut(s) 393, 871
BclI TGATCA 1 cut(s) 1123
BcoDI GTCTC 4 cut(s) 171, 212, 611, 965
BfaI CTAG 5 cut(s) 198, 293, 356, 1076, 1097
BfmI CTRYAG 1 cut(s) 212
BglI GCCNNNNNGGC 1 cut(s) 505
BglII AGATCT 1 cut(s) 432
BisI GCNGC 4 cut(s) 135, 497, 620, 861
BlsI GCNGC 4 cut(s) 136, 498, 621, 862
Bme1390I CCNGG 2 cut(s) 393, 871
Bme18I GGWCC 1 cut(s) 613
BmeT110I CYCGRG 1 cut(s) 608
BmgT120I GGNCC 2 cut(s) 613, 931
BmiI GGNNCC 3 cut(s) 614, 842, 921
BmrFI CCNGG 2 cut(s) 393, 871
BpuEI CTTGAG 1 cut(s) 932
BsaHI GRCGYC 1 cut(s) 465
BsaI GGTCTC 1 cut(s) 171
BsaJI CCNNGG 2 cut(s) 392, 717
Bsc4I CCNNNNNNNGG 4 cut(s) 732, 870, 939, 1019
Bse118I RCCGGY 1 cut(s) 1012
Bse1I ACTGG 2 cut(s) 62, 154
Bse3DI GCAATG 3 cut(s) 11, 24, 991
BseBI CCWGG 2 cut(s) 393, 871
BseDI CCNNGG 2 cut(s) 392, 717
BseGI GGATG 4 cut(s) 151, 271, 948, 1024
BseLI CCNNNNNNNGG 4 cut(s) 732, 870, 939, 1019
BseMI GCAATG 3 cut(s) 11, 24, 991
BseMII CTCAG 2 cut(s) 332, 447
BseNI ACTGG 2 cut(s) 62, 154
BseRI GAGGAG 2 cut(s) 782, 785
BseXI GCAGC 3 cut(s) 146, 606, 847
BsgI GTGCAG 1 cut(s) 405
BshFI GGCC 4 cut(s) 418, 499, 532, 932
BshNI GGYRCC 1 cut(s) 840
BsiHKAI GWGCWC 2 cut(s) 282, 667
BsiHKCI CYCGRG 1 cut(s) 608
BsiSI CCGG 1 cut(s) 1013
BslFI GGGAC 1 cut(s) 738
BslI CCNNNNNNNGG 4 cut(s) 732, 870, 939, 1019
BsmAI GTCTC 4 cut(s) 171, 212, 611, 965
BsmFI GGGAC 1 cut(s) 738
BsnI GGCC 4 cut(s) 418, 499, 532, 932
Bso31I GGTCTC 1 cut(s) 171
BsoBI CYCGRG 1 cut(s) 608
Bsp1286I GDGCHC 2 cut(s) 282, 667
Bsp143I GATC 5 cut(s) 367, 432, 795, 919, 1123
BspACI CCGC 4 cut(s) 361, 496, 806, 1016
BspANI GGCC 4 cut(s) 418, 499, 532, 932
BspCNI CTCAG 2 cut(s) 333, 448
BspLI GGNNCC 3 cut(s) 614, 842, 921
BspPI GGATC 3 cut(s) 803, 914, 927
BspT107I GGYRCC 1 cut(s) 840
BspTNI GGTCTC 1 cut(s) 171
BsrDI GCAATG 3 cut(s) 11, 24, 991
BsrFI RCCGGY 1 cut(s) 1012
BsrI ACTGG 2 cut(s) 62, 154
BssAI RCCGGY 1 cut(s) 1012
BssECI CCNNGG 2 cut(s) 392, 717
BssMI GATC 5 cut(s) 367, 432, 795, 919, 1123
BssNAI GTATAC 1 cut(s) 568
BssNI GRCGYC 1 cut(s) 465
BssSI CACGAG 1 cut(s) 601
Bst1107I GTATAC 1 cut(s) 568
Bst2BI CACGAG 1 cut(s) 601
Bst2UI CCWGG 2 cut(s) 393, 871
Bst4CI ACNGT 3 cut(s) 385, 741, 1106
Bst6I CTCTTC 1 cut(s) 993
BstACI GRCGYC 1 cut(s) 465
BstC8I GCNNGC 2 cut(s) 420, 584
BstDEI CTNAG 2 cut(s) 341, 456
BstF5I GGATG 4 cut(s) 151, 271, 948, 1024
BstKTI GATC 5 cut(s) 370, 435, 798, 922, 1126
BstMAI GTCTC 4 cut(s) 171, 212, 611, 965
BstMBI GATC 5 cut(s) 367, 432, 795, 919, 1123
BstMWI GCNNNNNNNGC 6 cut(s) 473, 505, 722, 812, 838, 866
BstNI CCWGG 2 cut(s) 393, 871
BstSCI CCNGG 2 cut(s) 391, 869
BstSFI CTRYAG 1 cut(s) 212
BstV1I GCAGC 3 cut(s) 146, 606, 847
BstX2I RGATCY 3 cut(s) 432, 795, 919
BstYI RGATCY 3 cut(s) 432, 795, 919
BstZ17I GTATAC 1 cut(s) 568
BsuRI GGCC 4 cut(s) 418, 499, 532, 932
BtsCI GGATG 4 cut(s) 151, 271, 948, 1024
BtsI GCAGTG 1 cut(s) 822
BtsIMutI CAGTG 2 cut(s) 822, 1111
Cac8I GCNNGC 2 cut(s) 420, 584
Cfr10I RCCGGY 1 cut(s) 1012
Cfr13I GGNCC 2 cut(s) 613, 931
CseI GACGC 2 cut(s) 473, 520
Csp6I GTAC 1 cut(s) 809
CviAII CATG 5 cut(s) 112, 414, 477, 845, 1121
CviQI GTAC 1 cut(s) 809
DdeI CTNAG 2 cut(s) 341, 456
DpnI GATC 5 cut(s) 369, 434, 797, 921, 1125
DpnII GATC 5 cut(s) 367, 432, 795, 919, 1123
Eam1104I CTCTTC 1 cut(s) 993
EarI CTCTTC 1 cut(s) 993
EciI GGCGGA 1 cut(s) 1031
Ecl136II GAGCTC 1 cut(s) 280
Eco24I GRGCYC 1 cut(s) 282
Eco31I GGTCTC 1 cut(s) 171
Eco47I GGWCC 1 cut(s) 613
Eco53kI GAGCTC 1 cut(s) 280
Eco57I CTGAAG 1 cut(s) 339
Eco88I CYCGRG 1 cut(s) 608
EcoICRI GAGCTC 1 cut(s) 280
EcoO109I RGGNCCY 1 cut(s) 613
EcoRII CCWGG 2 cut(s) 391, 869
EcoT38I GRGCYC 1 cut(s) 282
FaeI CATG 5 cut(s) 115, 417, 480, 848, 1124
FaqI GGGAC 1 cut(s) 738
FatI CATG 5 cut(s) 111, 413, 476, 844, 1120
FbaI TGATCA 1 cut(s) 1123
FblI GTMKAC 2 cut(s) 410, 567
Fnu4HI GCNGC 4 cut(s) 135, 497, 620, 861
FokI GGATG 4 cut(s) 158, 258, 955, 1031
FriOI GRGCYC 1 cut(s) 282
Fsp4HI GCNGC 4 cut(s) 135, 497, 620, 861
FspBI CTAG 5 cut(s) 198, 293, 356, 1076, 1097
GluI GCNGC 4 cut(s) 135, 497, 620, 861
HaeIII GGCC 4 cut(s) 418, 499, 532, 932
HapII CCGG 1 cut(s) 1013
HgaI GACGC 2 cut(s) 473, 520
Hin1I GRCGYC 1 cut(s) 465
Hin1II CATG 5 cut(s) 115, 417, 480, 848, 1124
HindIII AAGCTT 1 cut(s) 256
HinfI GANTC 2 cut(s) 296, 349
HpaII CCGG 1 cut(s) 1013
HphI GGTGA 2 cut(s) 184, 1015
Hpy166II GTNNAC 3 cut(s) 411, 568, 786
Hpy188I TCNGA 8 cut(s) 73, 103, 126, 239, 301, 442, 457, 879
Hpy188III TCNNGA 4 cut(s) 275, 293, 851, 911
Hpy8I GTNNAC 3 cut(s) 411, 568, 786
HpyAV CCTTC 3 cut(s) 163, 238, 478
HpyCH4III ACNGT 3 cut(s) 385, 741, 1106
HpyCH4IV ACGT 2 cut(s) 883, 1080
HpyF10VI GCNNNNNNNGC 6 cut(s) 473, 505, 722, 812, 838, 866
HpyF3I CTNAG 2 cut(s) 341, 456
HpySE526I ACGT 2 cut(s) 883, 1080
Hsp92I GRCGYC 1 cut(s) 465
Hsp92II CATG 5 cut(s) 115, 417, 480, 848, 1124
Ksp22I TGATCA 1 cut(s) 1123
Kzo9I GATC 5 cut(s) 367, 432, 795, 919, 1123
LmnI GCTCC 2 cut(s) 772, 853
Lsp1109I GCAGC 3 cut(s) 146, 606, 847
MaeI CTAG 5 cut(s) 198, 293, 356, 1076, 1097
MaeII ACGT 2 cut(s) 883, 1080
MaeIII GTNAC 2 cut(s) 538, 1003
MalI GATC 5 cut(s) 369, 434, 797, 921, 1125
MboI GATC 5 cut(s) 367, 432, 795, 919, 1123
MboII GAAGA 7 cut(s) 332, 344, 409, 412, 790, 1010, 1070
MflI RGATCY 3 cut(s) 432, 795, 919
MhlI GDGCHC 2 cut(s) 282, 667
MluCI AATT 4 cut(s) 307, 404, 549, 897
MmeI TCCRAC 1 cut(s) 16
MseI TTAA 2 cut(s) 489, 966
MspI CCGG 1 cut(s) 1013
MspR9I CCNGG 2 cut(s) 393, 871
MvaI CCWGG 2 cut(s) 393, 871
MwoI GCNNNNNNNGC 6 cut(s) 473, 505, 722, 812, 838, 866
NdeII GATC 5 cut(s) 367, 432, 795, 919, 1123
NlaIII CATG 5 cut(s) 115, 417, 480, 848, 1124
NlaIV GGNNCC 3 cut(s) 614, 842, 921
NmeAIII GCCGAG 1 cut(s) 742
NmuCI GTSAC 2 cut(s) 538, 1003
PfeI GAWTC 2 cut(s) 296, 349
PkrI GCNGC 4 cut(s) 136, 498, 621, 862
PpuMI RGGWCCY 1 cut(s) 613
Psp124BI GAGCTC 1 cut(s) 282
Psp5II RGGWCCY 1 cut(s) 613
Psp6I CCWGG 2 cut(s) 391, 869
PspGI CCWGG 2 cut(s) 391, 869
PspN4I GGNNCC 3 cut(s) 614, 842, 921
PspPI GGNCC 2 cut(s) 613, 931
PspPPI RGGWCCY 1 cut(s) 613
PsuI RGATCY 3 cut(s) 432, 795, 919
RsaI GTAC 1 cut(s) 810
RsaNI GTAC 1 cut(s) 809
SacI GAGCTC 1 cut(s) 282
SaqAI TTAA 2 cut(s) 489, 966
SatI GCNGC 4 cut(s) 135, 497, 620, 861
Sau3AI GATC 5 cut(s) 367, 432, 795, 919, 1123
Sau96I GGNCC 2 cut(s) 613, 931
ScrFI CCNGG 2 cut(s) 393, 871
SduI GDGCHC 2 cut(s) 282, 667
SfcI CTRYAG 1 cut(s) 212
SgrAI CRCCGGYG 1 cut(s) 1012
SinI GGWCC 1 cut(s) 613
SmlI CTYRAG 1 cut(s) 911
SmoI CTYRAG 1 cut(s) 911
Sse9I AATT 4 cut(s) 307, 404, 549, 897
SsiI CCGC 4 cut(s) 361, 496, 806, 1016
SspI AATATT 2 cut(s) 233, 657
SspMI CTAG 5 cut(s) 198, 293, 356, 1076, 1097
SstI GAGCTC 1 cut(s) 282
StyD4I CCNGG 2 cut(s) 391, 869
TaaI ACNGT 3 cut(s) 385, 741, 1106
TaiI ACGT 2 cut(s) 886, 1083
TasI AATT 4 cut(s) 307, 404, 549, 897
TauI GCSGC 1 cut(s) 499
TfiI GAWTC 2 cut(s) 296, 349
Tru1I TTAA 2 cut(s) 489, 966
Tru9I TTAA 2 cut(s) 489, 966
TscAI CASTG 2 cut(s) 822, 1111
TseFI GTSAC 2 cut(s) 538, 1003
TseI GCWGC 3 cut(s) 134, 619, 860
Tsp45I GTSAC 2 cut(s) 538, 1003
TspDTI ATGAA 6 cut(s) 54, 510, 870, 1011, 1104, 1125
TspGWI ACGGA 1 cut(s) 734
TspRI CASTG 2 cut(s) 822, 1111
VpaK11BI GGWCC 1 cut(s) 613
XapI RAATTY 1 cut(s) 307
XbaI TCTAGA 1 cut(s) 292
XmiI GTMKAC 2 cut(s) 410, 567
XspI CTAG 5 cut(s) 198, 293, 356, 1076, 1097
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.