Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0011885

Physical Location & Seq

Genomic Coordinates Forward (+)

23863341 .. 23866684

Gene Structure 3344 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1174500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGCCTGCACATTTGGAGATCTTTCCGTATTTTCTGAGAATGATGCCTTCTTTGCATGGACTTTTGTAAAACGAAGGCCTCTCTGGCAGACACTTCTTTCATTTTTCTGGCCGGTGGTTACATTGGCAATATGCTTGTTTCCTGTATATCCGCATCGGTGCAAGTTACTAATACTCTACTCATGTCTCGGGGTCCTGCTACTTTTTTTTTCTCTACTAGTTTTGAGGGGAACAATGTTTGGAGTTCTATATATTGTTTTGGGAAAGCGAGTTTGGTTTTTCCCGAACATTCTCGCCGAGGAAGCTACTTTGAGAGAACTATTCCGTTTCTGGCCCAAGAAGGATGAGGAGGAGCGACCAAAGTGGACAACAAGGGTTTTCTATGCGGCAGTTGCAGTGCTGGTCATATTGCTGCTGAGGCACCATGCTCCTGATGAAGCTGCCAGAGCCAGGTACCAGAAACGTGTATCTAACATTATCGATGATGTTATCGAGTGGTCTCCAAGATTGGCACTTTCTGGGATGATGGAGAAGCAGCAAACTGTGGTGAACGCGACAGAGCCTAGCAATGCAACCGAGGAAGAGGTGACACCACCTGACGGCATCGATGCAGAAACTTTGACAGTGCAGTACGATGCAGAAGTAAGTGAAAATCTAGAGAACAATGACGAAAACCTAGATAGTAGTGAAGAAAACCTAGACAACAGTGATGGAAAAAAACACGACGACATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005791 GO:0006605 GO:0006612 GO:0006620 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0030867 GO:0031090 GO:0031205 GO:0031207 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0098588 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 map03060 map04141

Pfam Domains

Protein Families

Sec62

Protein Analysis

245

Amino Acids

28.11

Weight (kDa)

4.84

Isoelectric Point (pI)

57.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec62	PF03839	11 - 99	1.1e-09	Translocation protein Sec62

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20920 AT3G20920
fragaria_vesca	FvH4_3g28770
malus_domestica	MD03G1174500.v1.1 MD11G1192300.v1.1
prunus_persica	Prupe.4G250000_v2.0.a1
pyrus_communis	pycom03g13190 pycom11g16810
rosa_chinensis	RchiOBHm_Chr5g0052271
rosa_laevigata	RLG00000034829
rosa_multiflora	Rmu_sc0009513.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028110
rosa_rugosa	Rorug05G0273200
rosa_samantha	Rh5AG346100 Rh5BG356800 Rh5CG382100 Rh5DG372100
rosa_wichuraiana	Rw5G032640 Rw5G032680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	453
AccB1I	GGYRCC	2 cut(s)	420, 453
AccII	CGCG	1 cut(s)	554
AciI	CCGC	2 cut(s)	152, 386
AcoI	YGGCCR	1 cut(s)	110
AfaI	GTAC	2 cut(s)	455, 632
AfiI	CCNNNNNNNGG	2 cut(s)	450, 599
AflIII	ACRYGT	1 cut(s)	463
AhlI	ACTAGT	1 cut(s)	217
AjnI	CCWGG	1 cut(s)	449
AjuI	GAANNNNNNNTTGG	2 cut(s)	256, 288
AluBI	AGCT	2 cut(s)	305, 440
AluI	AGCT	2 cut(s)	305, 440
Alw26I	GTCTC	2 cut(s)	191, 504
Ama87I	CYCGRG	1 cut(s)	188
AoxI	GGCC	4 cut(s)	3, 77, 110, 332
ApeKI	GCWGC	3 cut(s)	412, 440, 535
Asp718I	GGTACC	1 cut(s)	453
AspS9I	GGNCC	2 cut(s)	193, 333
AsuHPI	GGTGA	2 cut(s)	559, 598
AvaI	CYCGRG	1 cut(s)	188
AvaII	GGWCC	1 cut(s)	193
BanI	GGYRCC	2 cut(s)	420, 453
BbvCI	CCTCAGC	1 cut(s)	416
BbvI	GCAGC	3 cut(s)	399, 427, 547
BccI	CCATC	2 cut(s)	520, 704
BceAI	ACGGC	1 cut(s)	616
BciT130I	CCWGG	1 cut(s)	451
BcoDI	GTCTC	2 cut(s)	191, 504
BcuI	ACTAGT	1 cut(s)	217
BfaI	CTAG	5 cut(s)	218, 564, 656, 677, 698
BglI	GCCNNNNNGGC	1 cut(s)	85
BglII	AGATCT	1 cut(s)	19
BisI	GCNGC	4 cut(s)	387, 413, 441, 536
BlsI	GCNGC	4 cut(s)	388, 414, 442, 537
Bme1390I	CCNGG	1 cut(s)	451
Bme18I	GGWCC	1 cut(s)	193
BmeT110I	CYCGRG	1 cut(s)	188
BmgT120I	GGNCC	2 cut(s)	193, 333
BmiI	GGNNCC	3 cut(s)	194, 422, 455
BmrFI	CCNGG	1 cut(s)	451
BmsI	GCATC	5 cut(s)	34, 163, 598, 612, 625
Bpu10I	CCTNAGC	1 cut(s)	416
Bsa29I	ATCGAT	2 cut(s)	480, 606
BsaI	GGTCTC	1 cut(s)	504
BsaJI	CCNNGG	2 cut(s)	297, 576
Bsc4I	CCNNNNNNNGG	2 cut(s)	450, 599
Bse118I	RCCGGY	1 cut(s)	112
Bse3DI	GCAATG	1 cut(s)	574
BseBI	CCWGG	1 cut(s)	451
BseCI	ATCGAT	2 cut(s)	480, 606
BseDI	CCNNGG	2 cut(s)	297, 576
BseGI	GGATG	2 cut(s)	349, 528
BseLI	CCNNNNNNNGG	2 cut(s)	450, 599
BseMI	GCAATG	1 cut(s)	574
BseMII	CTCAG	2 cut(s)	27, 407
BseRI	GAGGAG	2 cut(s)	362, 365
BseXI	GCAGC	3 cut(s)	399, 427, 547
BsgI	GTGCAG	1 cut(s)	647
Bsh1236I	CGCG	1 cut(s)	554
BshFI	GGCC	4 cut(s)	5, 79, 112, 334
BshNI	GGYRCC	2 cut(s)	420, 453
BshVI	ATCGAT	2 cut(s)	480, 606
BsiHKCI	CYCGRG	1 cut(s)	188
BsiSI	CCGG	1 cut(s)	113
BslI	CCNNNNNNNGG	2 cut(s)	450, 599
BsmAI	GTCTC	2 cut(s)	191, 504
BsnI	GGCC	4 cut(s)	5, 79, 112, 334
Bso31I	GGTCTC	1 cut(s)	504
BsoBI	CYCGRG	1 cut(s)	188
Bsp143I	GATC	1 cut(s)	19
BspACI	CCGC	2 cut(s)	152, 386
BspANI	GGCC	4 cut(s)	5, 79, 112, 334
BspCNI	CTCAG	2 cut(s)	28, 408
BspDI	ATCGAT	2 cut(s)	480, 606
BspFNI	CGCG	1 cut(s)	554
BspLI	GGNNCC	3 cut(s)	194, 422, 455
BspT107I	GGYRCC	2 cut(s)	420, 453
BspTNI	GGTCTC	1 cut(s)	504
BsrDI	GCAATG	1 cut(s)	574
BsrFI	RCCGGY	1 cut(s)	112
BssAI	RCCGGY	1 cut(s)	112
BssECI	CCNNGG	2 cut(s)	297, 576
BssMI	GATC	1 cut(s)	19
Bst2UI	CCWGG	1 cut(s)	451
Bst4CI	ACNGT	3 cut(s)	544, 625, 707
Bst6I	CTCTTC	1 cut(s)	576
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	2 cut(s)	36, 416
BstF5I	GGATG	2 cut(s)	349, 528
BstFNI	CGCG	1 cut(s)	554
BstKTI	GATC	1 cut(s)	22
BstMAI	GTCTC	2 cut(s)	191, 504
BstMBI	GATC	1 cut(s)	19
BstMWI	GCNNNNNNNGC	6 cut(s)	53, 85, 302, 392, 418, 446
BstNI	CCWGG	1 cut(s)	451
BstSCI	CCNGG	1 cut(s)	449
BstUI	CGCG	1 cut(s)	554
BstV1I	GCAGC	3 cut(s)	399, 427, 547
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
Bsu15I	ATCGAT	2 cut(s)	480, 606
BsuRI	GGCC	4 cut(s)	5, 79, 112, 334
BsuTUI	ATCGAT	2 cut(s)	480, 606
BtsCI	GGATG	2 cut(s)	349, 528
BtsI	GCAGTG	1 cut(s)	402
BtsIMutI	CAGTG	3 cut(s)	402, 630, 712
Cac8I	GCNNGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	112
Cfr13I	GGNCC	2 cut(s)	193, 333
ClaI	ATCGAT	2 cut(s)	480, 606
Csp6I	GTAC	2 cut(s)	454, 631
CviAII	CATG	3 cut(s)	57, 183, 425
CviJI	RGCY	8 cut(s)	5, 79, 112, 305, 334, 440, 449, 562
CviKI_1	RGCY	8 cut(s)	5, 79, 112, 305, 334, 440, 449, 562
CviQI	GTAC	2 cut(s)	454, 631
DdeI	CTNAG	2 cut(s)	36, 416
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
EaeI	YGGCCR	1 cut(s)	110
Eam1104I	CTCTTC	1 cut(s)	576
EarI	CTCTTC	1 cut(s)	576
Eco147I	AGGCCT	1 cut(s)	79
Eco31I	GGTCTC	1 cut(s)	504
Eco47I	GGWCC	1 cut(s)	193
Eco88I	CYCGRG	1 cut(s)	188
EcoO109I	RGGNCCY	1 cut(s)	193
EcoRII	CCWGG	1 cut(s)	449
FaeI	CATG	3 cut(s)	60, 186, 428
FatI	CATG	3 cut(s)	56, 182, 424
Fnu4HI	GCNGC	4 cut(s)	387, 413, 441, 536
FokI	GGATG	2 cut(s)	356, 535
Fsp4HI	GCNGC	4 cut(s)	387, 413, 441, 536
FspBI	CTAG	5 cut(s)	218, 564, 656, 677, 698
GluI	GCNGC	4 cut(s)	387, 413, 441, 536
HaeIII	GGCC	4 cut(s)	5, 79, 112, 334
HapII	CCGG	1 cut(s)	113
Hin1II	CATG	3 cut(s)	60, 186, 428
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	2 cut(s)	559, 598
Hpy166II	GTNNAC	2 cut(s)	366, 550
Hpy188I	TCNGA	1 cut(s)	37
Hpy188III	TCNNGA	3 cut(s)	283, 431, 656
Hpy8I	GTNNAC	2 cut(s)	366, 550
Hpy99I	CGWCG	1 cut(s)	728
HpyAV	CCTTC	3 cut(s)	58, 69, 334
HpyCH4III	ACNGT	3 cut(s)	544, 625, 707
HpyCH4IV	ACGT	1 cut(s)	463
HpyCH4V	TGCA	8 cut(s)	9, 56, 162, 395, 572, 611, 628, 638
HpyF10VI	GCNNNNNNNGC	6 cut(s)	53, 85, 302, 392, 418, 446
HpyF3I	CTNAG	2 cut(s)	36, 416
HpySE526I	ACGT	1 cut(s)	463
Hsp92II	CATG	3 cut(s)	60, 186, 428
KpnI	GGTACC	1 cut(s)	457
Kzo9I	GATC	1 cut(s)	19
LmnI	GCTCC	2 cut(s)	352, 433
Lsp1109I	GCAGC	3 cut(s)	399, 427, 547
LweI	GCATC	5 cut(s)	34, 163, 598, 612, 625
MaeI	CTAG	5 cut(s)	218, 564, 656, 677, 698
MaeII	ACGT	1 cut(s)	463
MaeIII	GTNAC	3 cut(s)	118, 165, 586
MalI	GATC	1 cut(s)	21
MboI	GATC	1 cut(s)	19
MboII	GAAGA	2 cut(s)	593, 701
MflI	RGATCY	1 cut(s)	19
MnlI	CCTC	8 cut(s)	90, 219, 292, 340, 343, 411, 571, 577
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	1 cut(s)	451
MvaI	CCWGG	1 cut(s)	451
MvnI	CGCG	1 cut(s)	554
MwoI	GCNNNNNNNGC	6 cut(s)	53, 85, 302, 392, 418, 446
NdeII	GATC	1 cut(s)	19
NlaIII	CATG	3 cut(s)	60, 186, 428
NlaIV	GGNNCC	3 cut(s)	194, 422, 455
NmeAIII	GCCGAG	1 cut(s)	322
NmuCI	GTSAC	1 cut(s)	586
PceI	AGGCCT	1 cut(s)	79
PkrI	GCNGC	4 cut(s)	388, 414, 442, 537
PpuMI	RGGWCCY	1 cut(s)	193
Psp5II	RGGWCCY	1 cut(s)	193
Psp6I	CCWGG	1 cut(s)	449
PspGI	CCWGG	1 cut(s)	449
PspN4I	GGNNCC	3 cut(s)	194, 422, 455
PspPI	GGNCC	2 cut(s)	193, 333
PspPPI	RGGWCCY	1 cut(s)	193
PsuI	RGATCY	1 cut(s)	19
RsaI	GTAC	2 cut(s)	455, 632
RsaNI	GTAC	2 cut(s)	454, 631
SatI	GCNGC	4 cut(s)	387, 413, 441, 536
Sau3AI	GATC	1 cut(s)	19
Sau96I	GGNCC	2 cut(s)	193, 333
ScrFI	CCNGG	1 cut(s)	451
SetI	ASST	8 cut(s)	307, 442, 455, 466, 588, 598, 678, 699
SfaNI	GCATC	5 cut(s)	34, 163, 598, 612, 625
SinI	GGWCC	1 cut(s)	193
SpeI	ACTAGT	1 cut(s)	217
SseBI	AGGCCT	1 cut(s)	79
SsiI	CCGC	2 cut(s)	152, 386
SspMI	CTAG	5 cut(s)	218, 564, 656, 677, 698
StuI	AGGCCT	1 cut(s)	79
StyD4I	CCNGG	1 cut(s)	449
TaaI	ACNGT	3 cut(s)	544, 625, 707
TaiI	ACGT	1 cut(s)	466
TaqI	TCGA	3 cut(s)	480, 492, 606
TauI	GCSGC	1 cut(s)	389
TscAI	CASTG	3 cut(s)	402, 630, 712
TseFI	GTSAC	1 cut(s)	586
TseI	GCWGC	3 cut(s)	412, 440, 535
Tsp45I	GTSAC	1 cut(s)	586
TspDTI	ATGAA	2 cut(s)	90, 450
TspGWI	ACGGA	2 cut(s)	16, 314
TspRI	CASTG	3 cut(s)	402, 630, 712
VpaK11BI	GGWCC	1 cut(s)	193
XbaI	TCTAGA	1 cut(s)	655
XspI	CTAG	5 cut(s)	218, 564, 656, 677, 698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.