Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0011885

Physical Location & Seq

Genomic Coordinates Forward (+)

14125585 .. 14130139

Gene Structure 4555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g13190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGAATAATACCAAATCATTTTTTAATTATATTTTTATTTTTATTTTTATTTTTCATTTGTTGTTATATACATTTCAAAACAAAACAGAGAGAGAGAGTGAGAGAGAGAAAGGCAGTGGAGAAATGAAGAAAGCAGGAGGGGCAGAGAAGAAAAGGGTGCGAAGGTCATCAAACGCCATTCAAAACGGCGGCAGAGATTCCAACTCTGATACCCCTCCTAGGAAACAAGCTACCCAGAAAGATGTGTTCCAGTTGTTTGCTGAGAAGGTGAGAGACAATAAGGATTTGGTGTCTAGGTGGGCTGTTCTACAGGAGACACGTGTGGAATATTTCAGGGGAAAGGATTTTGTAAGCTTTTTAAGAAATCATCCTGATGTTAAAGATACTCTAGAATCAGATAGAAATCTAGAAGCTGAAGATATTGCCGATGCTTTACTGAGAAAGAATCTTCTGGTGCGCTGTGATCGTGTGGTGAAAACTCTTCGTCCTGGGAAGAGAAAGTTGTCTACGTGGCCTGCACATTTGGAGATCTTTCCGGACCAAGTATTTTCTGAGAATGATGCCTTCTTTGCATGGACTTTTGTAAAACGAAGGCCTCTCTGGCAGACACTTCTTTCATTTTTCTGGCCGGTGGTTACGTTGGCAATATGCTTGTTTCCTGTATATCCGCATCGGTGCAAGCTACTAATACTCTACTCATGTCTCGGGGTCCTGCTACTTTTTTTTTCTCTACTAGTTTTGAGGGGAACAATATTTGGAGTTCTATATATTGTTCTGGGAAAGCGAGTTTGGTTTTTCCCGAACATTCTCGCCGAGGAAGCTACTTTGAGAGAACTATTCCGTTTCTGGCCCAAGAAGGATGAGGAGGAGCGACCAAAGTGGACAACAAGGGTTTTCTATGCGGCAGTTGCAGTGCTGGTCATATTGCTGCTGAGGCACCATGCTCCTGATGAAGCTGCCAGAGCCAGGTACCAGAAACGTGTATCTAACATTATCGATGATGTTATCGAGTGGTCTCCAAGATTGGCGCTTTCTGGGATGATGGAGAAGCAGCAAACTGTGGTCAACGCGACAGAGCCTAGCGATGCAACAGAGGAAGAGGTGACACCACCTGACGGCATCGATGCAGAAACTTTCACAGTGCAGTACGATGCAGAAGTAAGTGAAAATCTAGAGAACAATGACGAAAACATAGACAGTAGTGAAGAAAACCTAGACAACAAAGATGAACAAAAACACAACGACATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005791 GO:0006605 GO:0006612 GO:0006620 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0030867 GO:0031090 GO:0031205 GO:0031207 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0098588 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 map03060 map04141

Pfam Domains

Protein Families

Sec62

Protein Analysis

417

Amino Acids

48.5

Weight (kDa)

6.25

Isoelectric Point (pI)

50.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec62	PF03839	137 - 271	6.8e-15	Translocation protein Sec62

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20920 AT3G20920
fragaria_vesca	FvH4_3g28770
malus_domestica	MD03G1174500.v1.1 MD11G1192300.v1.1
prunus_persica	Prupe.4G250000_v2.0.a1
pyrus_communis	pycom03g13190 pycom11g16810
rosa_chinensis	RchiOBHm_Chr5g0052271
rosa_laevigata	RLG00000034829
rosa_multiflora	Rmu_sc0009513.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028110
rosa_rugosa	Rorug05G0273200
rosa_samantha	Rh5AG346100 Rh5BG356800 Rh5CG382100 Rh5DG372100
rosa_wichuraiana	Rw5G032640 Rw5G032680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	969
AccB1I	GGYRCC	2 cut(s)	936, 969
AccI	GTMKAC	1 cut(s)	506
AccII	CGCG	1 cut(s)	1070
AccIII	TCCGGA	1 cut(s)	535
AciI	CCGC	3 cut(s)	189, 668, 902
AcoI	YGGCCR	1 cut(s)	626
AcuI	CTGAAG	1 cut(s)	435
AcvI	CACGTG	1 cut(s)	320
AfaI	GTAC	2 cut(s)	971, 1148
AfiI	CCNNNNNNNGG	3 cut(s)	219, 966, 1115
AflIII	ACRYGT	3 cut(s)	317, 319, 979
AgsI	TTSAA	2 cut(s)	77, 182
AhlI	ACTAGT	1 cut(s)	733
AjnI	CCWGG	2 cut(s)	487, 965
AjuI	GAANNNNNNNTTGG	2 cut(s)	772, 804
AluBI	AGCT	6 cut(s)	230, 354, 413, 682, 821, 956
AluI	AGCT	6 cut(s)	230, 354, 413, 682, 821, 956
Alw26I	GTCTC	4 cut(s)	267, 308, 707, 1020
Ama87I	CYCGRG	1 cut(s)	704
Aor13HI	TCCGGA	1 cut(s)	535
AoxI	GGCC	4 cut(s)	512, 593, 626, 848
ApeKI	GCWGC	3 cut(s)	928, 956, 1051
Asp718I	GGTACC	1 cut(s)	969
AspA2I	CCTAGG	1 cut(s)	218
AspLEI	GCGC	2 cut(s)	459, 1030
AspS9I	GGNCC	3 cut(s)	538, 709, 849
AsuHPI	GGTGA	3 cut(s)	280, 484, 1114
AvaI	CYCGRG	1 cut(s)	704
AvaII	GGWCC	2 cut(s)	538, 709
AvrII	CCTAGG	1 cut(s)	218
BanI	GGYRCC	2 cut(s)	936, 969
BbrPI	CACGTG	1 cut(s)	320
BbvCI	CCTCAGC	1 cut(s)	932
BbvI	GCAGC	3 cut(s)	915, 943, 1063
BccI	CCATC	1 cut(s)	1036
BceAI	ACGGC	2 cut(s)	202, 1132
BciT130I	CCWGG	2 cut(s)	489, 967
BcoDI	GTCTC	4 cut(s)	267, 308, 707, 1020
BcuI	ACTAGT	1 cut(s)	733
BfaI	CTAG	8 cut(s)	219, 294, 389, 407, 734, 1080, 1172, 1214
BfmI	CTRYAG	1 cut(s)	308
BfoI	RGCGCY	1 cut(s)	1031
BglI	GCCNNNNNGGC	1 cut(s)	601
BglII	AGATCT	1 cut(s)	528
BisI	GCNGC	5 cut(s)	190, 903, 929, 957, 1052
BlnI	CCTAGG	1 cut(s)	218
BlsI	GCNGC	5 cut(s)	191, 904, 930, 958, 1053
Bme1390I	CCNGG	2 cut(s)	489, 967
Bme18I	GGWCC	2 cut(s)	538, 709
BmeT110I	CYCGRG	1 cut(s)	704
BmgT120I	GGNCC	3 cut(s)	538, 709, 849
BmiI	GGNNCC	3 cut(s)	710, 938, 971
BmrFI	CCNGG	2 cut(s)	489, 967
BmsI	GCATC	7 cut(s)	418, 550, 679, 1075, 1114, 1128, 1141
Bpu10I	CCTNAGC	1 cut(s)	932
Bsa29I	ATCGAT	2 cut(s)	996, 1122
BsaAI	YACGTR	2 cut(s)	320, 510
BsaBI	GATNNNNATC	1 cut(s)	402
BsaI	GGTCTC	1 cut(s)	1020
BsaJI	CCNNGG	3 cut(s)	218, 488, 813
BsaWI	WCCGGW	1 cut(s)	535
Bsc4I	CCNNNNNNNGG	3 cut(s)	219, 966, 1115
Bse118I	RCCGGY	1 cut(s)	628
Bse1I	ACTGG	1 cut(s)	250
Bse8I	GATNNNNATC	1 cut(s)	402
BseAI	TCCGGA	1 cut(s)	535
BseBI	CCWGG	2 cut(s)	489, 967
BseCI	ATCGAT	2 cut(s)	996, 1122
BseDI	CCNNGG	3 cut(s)	218, 488, 813
BseGI	GGATG	3 cut(s)	367, 865, 1044
BseJI	GATNNNNATC	1 cut(s)	402
BseLI	CCNNNNNNNGG	3 cut(s)	219, 966, 1115
BseMII	CTCAG	4 cut(s)	252, 428, 543, 923
BseNI	ACTGG	1 cut(s)	250
BseRI	GAGGAG	2 cut(s)	878, 881
BseXI	GCAGC	3 cut(s)	915, 943, 1063
BsgI	GTGCAG	2 cut(s)	501, 1163
Bsh1236I	CGCG	1 cut(s)	1070
BshFI	GGCC	4 cut(s)	514, 595, 628, 850
BshNI	GGYRCC	2 cut(s)	936, 969
BshVI	ATCGAT	2 cut(s)	996, 1122
BsiHKCI	CYCGRG	1 cut(s)	704
BsiSI	CCGG	2 cut(s)	536, 629
BslI	CCNNNNNNNGG	3 cut(s)	219, 966, 1115
BsmAI	GTCTC	4 cut(s)	267, 308, 707, 1020
BsnI	GGCC	4 cut(s)	514, 595, 628, 850
Bso31I	GGTCTC	1 cut(s)	1020
BsoBI	CYCGRG	1 cut(s)	704
Bsp13I	TCCGGA	1 cut(s)	535
Bsp143I	GATC	2 cut(s)	463, 528
BspACI	CCGC	3 cut(s)	189, 668, 902
BspANI	GGCC	4 cut(s)	514, 595, 628, 850
BspCNI	CTCAG	4 cut(s)	253, 429, 544, 924
BspDI	ATCGAT	2 cut(s)	996, 1122
BspEI	TCCGGA	1 cut(s)	535
BspFNI	CGCG	1 cut(s)	1070
BspLI	GGNNCC	3 cut(s)	710, 938, 971
BspT107I	GGYRCC	2 cut(s)	936, 969
BspTNI	GGTCTC	1 cut(s)	1020
BsrFI	RCCGGY	1 cut(s)	628
BsrI	ACTGG	1 cut(s)	250
BssAI	RCCGGY	1 cut(s)	628
BssECI	CCNNGG	3 cut(s)	218, 488, 813
BssMI	GATC	2 cut(s)	463, 528
BssT1I	CCWWGG	1 cut(s)	218
Bst2UI	CCWGG	2 cut(s)	489, 967
Bst4CI	ACNGT	3 cut(s)	1060, 1141, 1199
Bst6I	CTCTTC	3 cut(s)	486, 488, 1092
BstBAI	YACGTR	2 cut(s)	320, 510
BstC8I	GCNNGC	2 cut(s)	516, 680
BstDEI	CTNAG	4 cut(s)	261, 437, 552, 932
BstF5I	GGATG	3 cut(s)	367, 865, 1044
BstFNI	CGCG	1 cut(s)	1070
BstH2I	RGCGCY	1 cut(s)	1031
BstHHI	GCGC	2 cut(s)	459, 1030
BstKTI	GATC	2 cut(s)	466, 531
BstMAI	GTCTC	4 cut(s)	267, 308, 707, 1020
BstMBI	GATC	2 cut(s)	463, 528
BstMWI	GCNNNNNNNGC	7 cut(s)	140, 569, 601, 818, 908, 934, 962
BstNI	CCWGG	2 cut(s)	489, 967
BstSCI	CCNGG	2 cut(s)	487, 965
BstSFI	CTRYAG	1 cut(s)	308
BstUI	CGCG	1 cut(s)	1070
BstV1I	GCAGC	3 cut(s)	915, 943, 1063
BstX2I	RGATCY	1 cut(s)	528
BstYI	RGATCY	1 cut(s)	528
Bsu15I	ATCGAT	2 cut(s)	996, 1122
BsuRI	GGCC	4 cut(s)	514, 595, 628, 850
BsuTUI	ATCGAT	2 cut(s)	996, 1122
BtgZI	GCGATG	1 cut(s)	1098
BtsCI	GGATG	3 cut(s)	367, 865, 1044
BtsI	GCAGTG	2 cut(s)	121, 918
BtsIMutI	CAGTG	3 cut(s)	121, 918, 1146
Cac8I	GCNNGC	2 cut(s)	516, 680
CfoI	GCGC	2 cut(s)	459, 1030
Cfr10I	RCCGGY	1 cut(s)	628
Cfr13I	GGNCC	3 cut(s)	538, 709, 849
ClaI	ATCGAT	2 cut(s)	996, 1122
Csp6I	GTAC	2 cut(s)	970, 1147
CviAII	CATG	3 cut(s)	573, 699, 941
CviQI	GTAC	2 cut(s)	970, 1147
DdeI	CTNAG	4 cut(s)	261, 437, 552, 932
DpnI	GATC	2 cut(s)	465, 530
DpnII	GATC	2 cut(s)	463, 528
EaeI	YGGCCR	1 cut(s)	626
Eam1104I	CTCTTC	3 cut(s)	486, 488, 1092
EarI	CTCTTC	3 cut(s)	486, 488, 1092
Eco130I	CCWWGG	1 cut(s)	218
Eco147I	AGGCCT	1 cut(s)	595
Eco31I	GGTCTC	1 cut(s)	1020
Eco47I	GGWCC	2 cut(s)	538, 709
Eco57I	CTGAAG	1 cut(s)	435
Eco72I	CACGTG	1 cut(s)	320
Eco88I	CYCGRG	1 cut(s)	704
EcoO109I	RGGNCCY	1 cut(s)	709
EcoRII	CCWGG	2 cut(s)	487, 965
EcoT14I	CCWWGG	1 cut(s)	218
ErhI	CCWWGG	1 cut(s)	218
FaeI	CATG	3 cut(s)	576, 702, 944
FatI	CATG	3 cut(s)	572, 698, 940
FblI	GTMKAC	1 cut(s)	506
Fnu4HI	GCNGC	5 cut(s)	190, 903, 929, 957, 1052
FokI	GGATG	3 cut(s)	354, 872, 1051
Fsp4HI	GCNGC	5 cut(s)	190, 903, 929, 957, 1052
FspBI	CTAG	8 cut(s)	219, 294, 389, 407, 734, 1080, 1172, 1214
GlaI	GCGC	2 cut(s)	458, 1029
GluI	GCNGC	5 cut(s)	190, 903, 929, 957, 1052
HaeII	RGCGCY	1 cut(s)	1031
HaeIII	GGCC	4 cut(s)	514, 595, 628, 850
HapII	CCGG	2 cut(s)	536, 629
HhaI	GCGC	2 cut(s)	459, 1030
Hin1II	CATG	3 cut(s)	576, 702, 944
Hin6I	GCGC	2 cut(s)	457, 1028
HinP1I	GCGC	2 cut(s)	457, 1028
HincII	GTYRAC	1 cut(s)	1066
HindII	GTYRAC	1 cut(s)	1066
HindIII	AAGCTT	1 cut(s)	352
HinfI	GANTC	3 cut(s)	197, 392, 445
HpaII	CCGG	2 cut(s)	536, 629
HphI	GGTGA	3 cut(s)	280, 484, 1114
Hpy166II	GTNNAC	3 cut(s)	507, 882, 1066
Hpy188I	TCNGA	3 cut(s)	208, 397, 553
Hpy188III	TCNNGA	7 cut(s)	371, 389, 407, 536, 799, 947, 1172
Hpy8I	GTNNAC	3 cut(s)	507, 882, 1066
HpyAV	CCTTC	5 cut(s)	156, 259, 574, 585, 850
HpyCH4III	ACNGT	3 cut(s)	1060, 1141, 1199
HpyCH4IV	ACGT	4 cut(s)	319, 509, 638, 979
HpyCH4V	TGCA	8 cut(s)	518, 572, 678, 911, 1088, 1127, 1144, 1154
HpyF10VI	GCNNNNNNNGC	7 cut(s)	140, 569, 601, 818, 908, 934, 962
HpyF3I	CTNAG	4 cut(s)	261, 437, 552, 932
HpySE526I	ACGT	4 cut(s)	319, 509, 638, 979
Hsp92II	CATG	3 cut(s)	576, 702, 944
HspAI	GCGC	2 cut(s)	457, 1028
Kpn2I	TCCGGA	1 cut(s)	535
KpnI	GGTACC	1 cut(s)	973
Kzo9I	GATC	2 cut(s)	463, 528
LmnI	GCTCC	2 cut(s)	868, 949
Lsp1109I	GCAGC	3 cut(s)	915, 943, 1063
LweI	GCATC	7 cut(s)	418, 550, 679, 1075, 1114, 1128, 1141
MaeI	CTAG	8 cut(s)	219, 294, 389, 407, 734, 1080, 1172, 1214
MaeII	ACGT	4 cut(s)	319, 509, 638, 979
MaeIII	GTNAC	2 cut(s)	634, 1102
MalI	GATC	2 cut(s)	465, 530
MboI	GATC	2 cut(s)	463, 528
MboII	GAAGA	8 cut(s)	139, 160, 428, 440, 473, 505, 1109, 1217
MflI	RGATCY	1 cut(s)	528
MluCI	AATT	1 cut(s)	25
MmeI	TCCRAC	1 cut(s)	225
MroI	TCCGGA	1 cut(s)	535
MseI	TTAA	3 cut(s)	24, 359, 378
MslI	CAYNNNNRTG	1 cut(s)	372
MspI	CCGG	2 cut(s)	536, 629
MspR9I	CCNGG	2 cut(s)	489, 967
MvaI	CCWGG	2 cut(s)	489, 967
MvnI	CGCG	1 cut(s)	1070
MwoI	GCNNNNNNNGC	7 cut(s)	140, 569, 601, 818, 908, 934, 962
NdeII	GATC	2 cut(s)	463, 528
NlaIII	CATG	3 cut(s)	576, 702, 944
NlaIV	GGNNCC	3 cut(s)	710, 938, 971
NmeAIII	GCCGAG	1 cut(s)	838
NmuCI	GTSAC	1 cut(s)	1102
PceI	AGGCCT	1 cut(s)	595
PfeI	GAWTC	3 cut(s)	197, 392, 445
PkrI	GCNGC	5 cut(s)	191, 904, 930, 958, 1053
PmaCI	CACGTG	1 cut(s)	320
PmlI	CACGTG	1 cut(s)	320
Ppu21I	YACGTR	2 cut(s)	320, 510
PpuMI	RGGWCCY	1 cut(s)	709
Psp5II	RGGWCCY	1 cut(s)	709
Psp6I	CCWGG	2 cut(s)	487, 965
PspCI	CACGTG	1 cut(s)	320
PspGI	CCWGG	2 cut(s)	487, 965
PspN4I	GGNNCC	3 cut(s)	710, 938, 971
PspPI	GGNCC	3 cut(s)	538, 709, 849
PspPPI	RGGWCCY	1 cut(s)	709
PsuI	RGATCY	1 cut(s)	528
RsaI	GTAC	2 cut(s)	971, 1148
RsaNI	GTAC	2 cut(s)	970, 1147
RseI	CAYNNNNRTG	1 cut(s)	372
SaqAI	TTAA	3 cut(s)	24, 359, 378
SatI	GCNGC	5 cut(s)	190, 903, 929, 957, 1052
Sau3AI	GATC	2 cut(s)	463, 528
Sau96I	GGNCC	3 cut(s)	538, 709, 849
ScrFI	CCNGG	2 cut(s)	489, 967
SfaNI	GCATC	7 cut(s)	418, 550, 679, 1075, 1114, 1128, 1141
SfcI	CTRYAG	1 cut(s)	308
SinI	GGWCC	2 cut(s)	538, 709
SmiMI	CAYNNNNRTG	1 cut(s)	372
SpeI	ACTAGT	1 cut(s)	733
Sse9I	AATT	1 cut(s)	25
SseBI	AGGCCT	1 cut(s)	595
SsiI	CCGC	3 cut(s)	189, 668, 902
SspI	AATATT	2 cut(s)	329, 753
SspMI	CTAG	8 cut(s)	219, 294, 389, 407, 734, 1080, 1172, 1214
StuI	AGGCCT	1 cut(s)	595
StyD4I	CCNGG	2 cut(s)	487, 965
StyI	CCWWGG	1 cut(s)	218
TaaI	ACNGT	3 cut(s)	1060, 1141, 1199
TaiI	ACGT	4 cut(s)	322, 512, 641, 982
TaqI	TCGA	3 cut(s)	996, 1008, 1122
TasI	AATT	1 cut(s)	25
TauI	GCSGC	2 cut(s)	192, 905
TfiI	GAWTC	3 cut(s)	197, 392, 445
Tru1I	TTAA	3 cut(s)	24, 359, 378
Tru9I	TTAA	3 cut(s)	24, 359, 378
TscAI	CASTG	3 cut(s)	121, 918, 1146
TseFI	GTSAC	1 cut(s)	1102
TseI	GCWGC	3 cut(s)	928, 956, 1051
Tsp45I	GTSAC	1 cut(s)	1102
TspDTI	ATGAA	6 cut(s)	17, 44, 140, 606, 966, 1242
TspGWI	ACGGA	1 cut(s)	830
TspRI	CASTG	3 cut(s)	121, 918, 1146
VpaK11BI	GGWCC	2 cut(s)	538, 709
XbaI	TCTAGA	3 cut(s)	388, 406, 1171
XmaJI	CCTAGG	1 cut(s)	218
XmiI	GTMKAC	1 cut(s)	506
XspI	CTAG	8 cut(s)	219, 294, 389, 407, 734, 1080, 1172, 1214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.