Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0011885

Physical Location & Seq

Genomic Coordinates Reverse (-)

16714884 .. 16720265

Gene Structure 5382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G250000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGAAGAAAGCAGGAGGGGCAGAGAAGAAAAGGGTGCGAAGGTCATCAGGCGCTATTCAGAACGGCGGCAGAGATTCCAACTCTGATACCCCTCCTAGGAAACAAGCTATCCAGAAGGATTTGTTCCAGTTGTTTGCAGAGAAGGTGAGAGACCATAAGGATTTGGTGTCTAGGTGGGCTGTTCTACAGGAGACACGCGTGGAATATTTCAGGGGGAAGGATTTTGTAAGATTTTTGAGGAATCATCCTGAACTCAAAGATATTCTAGAATCGGATAGAAATCTAGAAGCTGAAGATATTGCCGATGTTTTACTGAGAAAGAATCTTCTAGTTCGCTGTGATCGTGTGGTGAAAACTCTTCGTCCTGGAAAGAAAAAGTTGTCTACATGGCCTGCACATCTGGAGATCTTTCCAGACCAAGTATTTTCTGAGAATGATGCCTTCTTTGCATGGACTTTTGTTAAAAGGCGGCCTCTCTGGCAGACGCTTCTCTCATTTTTCTGGCCAGTGGTGACATTGGCAATTTGCTTGTTTCCTGTATATCCCCATCGGTGCAAGCTACTAATACTCTACTCATGTCTCGGGGTCCTGCTACTGTTTCTTTCTCTACTTGTTTTGAGGGGTGCGATATTTGGAGCTCTATACATTATTTTGGGGAAACGAGTTTGGTTTTTCCCCAACATTCTCGCCGAGGAAGCTACTTTGAGAGAATTGTTCCGTTTCTGGCCCCAGAAAGATGAGGAGGAGCGACCAAAGTGGACGACACGAGTTTTCTATGCGGCAGTTGGAGTGCTGGTCATATTGCTACTGAGGCATCATGCTCCTGATGAAGCTGCTAGAGCCAGGTATCAGAAACGTGTATCGAACATAATTGATGATGTTCTTGAGTGGTCTCCAAGATTGGCGCTTTCTGGGATGATGGAGAATCTGCAACCAGTAGTTAATGCGACTGAGGCAAGCAATGCAACTGAGGAAGGTGTGACACCACCTGATGGCATGGGCGCAGAAACTATCACAGAGCAGGATGAGGCAGAAGTTAGTGAAAATCTAGAGAACACTGATGAAAACCTAGACAATAGTGAGGAAAACCTAGACAATAGCGGTGAACAAAAACATGATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005791 GO:0006605 GO:0006612 GO:0006620 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0030867 GO:0031090 GO:0031205 GO:0031207 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0098588 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 map03060 map04141

Pfam Domains

Protein Families

Sec62

Protein Analysis

375

Amino Acids

43.07

Weight (kDa)

6.24

Isoelectric Point (pI)

49.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20920 AT3G20920
fragaria_vesca	FvH4_3g28770
malus_domestica	MD03G1174500.v1.1 MD11G1192300.v1.1
prunus_persica	Prupe.4G250000_v2.0.a1
pyrus_communis	pycom03g13190 pycom11g16810
rosa_chinensis	RchiOBHm_Chr5g0052271
rosa_laevigata	RLG00000034829
rosa_multiflora	Rmu_sc0009513.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028110
rosa_rugosa	Rorug05G0273200
rosa_samantha	Rh5AG346100 Rh5BG356800 Rh5CG382100 Rh5DG372100
rosa_wichuraiana	Rw5G032640 Rw5G032680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	992
AccI	GTMKAC	1 cut(s)	383
AccII	CGCG	1 cut(s)	198
AciI	CCGC	4 cut(s)	66, 469, 779, 1101
AcoI	YGGCCR	1 cut(s)	503
AcuI	CTGAAG	1 cut(s)	312
AfiI	CCNNNNNNNGG	2 cut(s)	96, 992
AflIII	ACRYGT	2 cut(s)	196, 856
AjnI	CCWGG	2 cut(s)	364, 842
AluBI	AGCT	6 cut(s)	107, 290, 559, 638, 698, 833
AluI	AGCT	6 cut(s)	107, 290, 559, 638, 698, 833
Alw21I	GWGCWC	1 cut(s)	640
Alw26I	GTCTC	4 cut(s)	144, 185, 584, 897
Ama87I	CYCGRG	1 cut(s)	581
AoxI	GGCC	4 cut(s)	389, 470, 503, 725
ApeKI	GCWGC	1 cut(s)	833
AspA2I	CCTAGG	1 cut(s)	95
AspLEI	GCGC	3 cut(s)	53, 907, 1004
AspS9I	GGNCC	2 cut(s)	586, 726
AsuHPI	GGTGA	4 cut(s)	157, 361, 523, 1115
AvaI	CYCGRG	1 cut(s)	581
AvaII	GGWCC	1 cut(s)	586
AvrII	CCTAGG	1 cut(s)	95
BalI	TGGCCA	1 cut(s)	505
BanII	GRGCYC	1 cut(s)	640
BauI	CACGAG	1 cut(s)	765
Bbv12I	GWGCWC	1 cut(s)	640
BbvI	GCAGC	1 cut(s)	820
BccI	CCATC	3 cut(s)	555, 913, 986
BceAI	ACGGC	1 cut(s)	79
BciT130I	CCWGG	2 cut(s)	366, 844
BcoDI	GTCTC	4 cut(s)	144, 185, 584, 897
BfaI	CTAG	9 cut(s)	96, 171, 266, 284, 329, 837, 1049, 1070, 1091
BfmI	CTRYAG	1 cut(s)	185
BfoI	RGCGCY	2 cut(s)	54, 908
BglI	GCCNNNNNGGC	1 cut(s)	478
BglII	AGATCT	1 cut(s)	405
BisI	GCNGC	4 cut(s)	67, 470, 780, 834
BlnI	CCTAGG	1 cut(s)	95
BlsI	GCNGC	4 cut(s)	68, 471, 781, 835
Bme1390I	CCNGG	2 cut(s)	366, 844
Bme18I	GGWCC	1 cut(s)	586
BmeT110I	CYCGRG	1 cut(s)	581
BmgT120I	GGNCC	2 cut(s)	586, 726
BmiI	GGNNCC	2 cut(s)	587, 728
BmrFI	CCNGG	2 cut(s)	366, 844
BmsI	GCATC	2 cut(s)	427, 823
BpmI	CTGGAG	1 cut(s)	422
BpuEI	CTTGAG	1 cut(s)	905
BsaBI	GATNNNNATC	1 cut(s)	279
BsaI	GGTCTC	2 cut(s)	144, 897
BsaJI	CCNNGG	2 cut(s)	95, 690
BsaXI	ACNNNNNCTCC	2 cut(s)	780, 810
Bsc4I	CCNNNNNNNGG	2 cut(s)	96, 992
Bse1I	ACTGG	3 cut(s)	127, 506, 935
Bse3DI	GCAATG	1 cut(s)	967
Bse8I	GATNNNNATC	1 cut(s)	279
BseBI	CCWGG	2 cut(s)	366, 844
BseDI	CCNNGG	2 cut(s)	95, 690
BseGI	GGATG	3 cut(s)	244, 921, 1030
BseJI	GATNNNNATC	1 cut(s)	279
BseLI	CCNNNNNNNGG	2 cut(s)	96, 992
BseMI	GCAATG	1 cut(s)	967
BseMII	CTCAG	5 cut(s)	305, 420, 800, 942, 960
BseNI	ACTGG	3 cut(s)	127, 506, 935
BseRI	GAGGAG	2 cut(s)	755, 758
BseXI	GCAGC	1 cut(s)	820
BsgI	GTGCAG	1 cut(s)	378
Bsh1236I	CGCG	1 cut(s)	198
BshFI	GGCC	4 cut(s)	391, 472, 505, 727
BsiHKAI	GWGCWC	1 cut(s)	640
BsiHKCI	CYCGRG	1 cut(s)	581
BslI	CCNNNNNNNGG	2 cut(s)	96, 992
BsmAI	GTCTC	4 cut(s)	144, 185, 584, 897
BsnI	GGCC	4 cut(s)	391, 472, 505, 727
Bso31I	GGTCTC	2 cut(s)	144, 897
BsoBI	CYCGRG	1 cut(s)	581
Bsp1286I	GDGCHC	1 cut(s)	640
Bsp143I	GATC	2 cut(s)	340, 405
BspACI	CCGC	4 cut(s)	66, 469, 779, 1101
BspANI	GGCC	4 cut(s)	391, 472, 505, 727
BspCNI	CTCAG	5 cut(s)	306, 421, 801, 943, 961
BspFNI	CGCG	1 cut(s)	198
BspLI	GGNNCC	2 cut(s)	587, 728
BspTNI	GGTCTC	2 cut(s)	144, 897
BsrDI	GCAATG	1 cut(s)	967
BsrI	ACTGG	3 cut(s)	127, 506, 935
BssECI	CCNNGG	2 cut(s)	95, 690
BssMI	GATC	2 cut(s)	340, 405
BssSI	CACGAG	1 cut(s)	765
BssT1I	CCWWGG	1 cut(s)	95
Bst2BI	CACGAG	1 cut(s)	765
Bst2UI	CCWGG	2 cut(s)	366, 844
Bst4CI	ACNGT	1 cut(s)	597
Bst6I	CTCTTC	1 cut(s)	363
BstAPI	GCANNNNNTGC	1 cut(s)	962
BstC8I	GCNNGC	3 cut(s)	393, 557, 958
BstDEI	CTNAG	5 cut(s)	314, 429, 809, 951, 969
BstF5I	GGATG	3 cut(s)	244, 921, 1030
BstFNI	CGCG	1 cut(s)	198
BstH2I	RGCGCY	2 cut(s)	54, 908
BstHHI	GCGC	3 cut(s)	53, 907, 1004
BstKTI	GATC	2 cut(s)	343, 408
BstMAI	GTCTC	4 cut(s)	144, 185, 584, 897
BstMBI	GATC	2 cut(s)	340, 405
BstMWI	GCNNNNNNNGC	8 cut(s)	17, 446, 478, 695, 811, 839, 953, 962
BstNI	CCWGG	2 cut(s)	366, 844
BstSCI	CCNGG	2 cut(s)	364, 842
BstSFI	CTRYAG	1 cut(s)	185
BstUI	CGCG	1 cut(s)	198
BstV1I	GCAGC	1 cut(s)	820
BstX2I	RGATCY	1 cut(s)	405
BstYI	RGATCY	1 cut(s)	405
BsuRI	GGCC	4 cut(s)	391, 472, 505, 727
BtsCI	GGATG	3 cut(s)	244, 921, 1030
BtsIMutI	CAGTG	2 cut(s)	513, 1056
Cac8I	GCNNGC	3 cut(s)	393, 557, 958
CfoI	GCGC	3 cut(s)	53, 907, 1004
Cfr13I	GGNCC	2 cut(s)	586, 726
CseI	GACGC	1 cut(s)	493
CviAII	CATG	6 cut(s)	387, 450, 576, 818, 997, 1115
DdeI	CTNAG	5 cut(s)	314, 429, 809, 951, 969
DpnI	GATC	2 cut(s)	342, 407
DpnII	GATC	2 cut(s)	340, 405
EaeI	YGGCCR	1 cut(s)	503
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
Ecl136II	GAGCTC	1 cut(s)	638
Eco130I	CCWWGG	1 cut(s)	95
Eco24I	GRGCYC	1 cut(s)	640
Eco31I	GGTCTC	2 cut(s)	144, 897
Eco47I	GGWCC	1 cut(s)	586
Eco53kI	GAGCTC	1 cut(s)	638
Eco57I	CTGAAG	1 cut(s)	312
Eco88I	CYCGRG	1 cut(s)	581
EcoICRI	GAGCTC	1 cut(s)	638
EcoO109I	RGGNCCY	1 cut(s)	586
EcoRII	CCWGG	2 cut(s)	364, 842
EcoT14I	CCWWGG	1 cut(s)	95
EcoT38I	GRGCYC	1 cut(s)	640
ErhI	CCWWGG	1 cut(s)	95
FaeI	CATG	6 cut(s)	390, 453, 579, 821, 1000, 1118
FatI	CATG	6 cut(s)	386, 449, 575, 817, 996, 1114
FblI	GTMKAC	1 cut(s)	383
Fnu4HI	GCNGC	4 cut(s)	67, 470, 780, 834
FokI	GGATG	3 cut(s)	231, 928, 1037
FriOI	GRGCYC	1 cut(s)	640
Fsp4HI	GCNGC	4 cut(s)	67, 470, 780, 834
FspBI	CTAG	9 cut(s)	96, 171, 266, 284, 329, 837, 1049, 1070, 1091
GlaI	GCGC	3 cut(s)	52, 906, 1003
GluI	GCNGC	4 cut(s)	67, 470, 780, 834
GsuI	CTGGAG	1 cut(s)	422
HaeII	RGCGCY	2 cut(s)	54, 908
HaeIII	GGCC	4 cut(s)	391, 472, 505, 727
HgaI	GACGC	1 cut(s)	493
HhaI	GCGC	3 cut(s)	53, 907, 1004
Hin1II	CATG	6 cut(s)	390, 453, 579, 821, 1000, 1118
Hin6I	GCGC	3 cut(s)	51, 905, 1002
HinP1I	GCGC	3 cut(s)	51, 905, 1002
HinfI	GANTC	5 cut(s)	74, 241, 269, 322, 925
HphI	GGTGA	4 cut(s)	157, 361, 523, 1115
Hpy166II	GTNNAC	3 cut(s)	384, 759, 1106
Hpy188I	TCNGA	5 cut(s)	60, 85, 274, 430, 852
Hpy188III	TCNNGA	9 cut(s)	112, 248, 266, 284, 401, 413, 824, 884, 1049
Hpy8I	GTNNAC	3 cut(s)	384, 759, 1106
HpyAV	CCTTC	6 cut(s)	33, 109, 136, 211, 451, 968
HpyCH4III	ACNGT	1 cut(s)	597
HpyCH4IV	ACGT	1 cut(s)	856
HpyCH4V	TGCA	6 cut(s)	137, 395, 449, 555, 931, 965
HpyF10VI	GCNNNNNNNGC	8 cut(s)	17, 446, 478, 695, 811, 839, 953, 962
HpyF3I	CTNAG	5 cut(s)	314, 429, 809, 951, 969
HpySE526I	ACGT	1 cut(s)	856
Hsp92II	CATG	6 cut(s)	390, 453, 579, 821, 1000, 1118
HspAI	GCGC	3 cut(s)	51, 905, 1002
Kzo9I	GATC	2 cut(s)	340, 405
LmnI	GCTCC	3 cut(s)	635, 745, 826
Lsp1109I	GCAGC	1 cut(s)	820
LweI	GCATC	2 cut(s)	427, 823
MaeI	CTAG	9 cut(s)	96, 171, 266, 284, 329, 837, 1049, 1070, 1091
MaeII	ACGT	1 cut(s)	856
MaeIII	GTNAC	2 cut(s)	511, 979
MalI	GATC	2 cut(s)	342, 407
MboI	GATC	2 cut(s)	340, 405
MboII	GAAGA	5 cut(s)	16, 37, 305, 317, 350
MflI	RGATCY	1 cut(s)	405
MhlI	GDGCHC	1 cut(s)	640
MlsI	TGGCCA	1 cut(s)	505
MluCI	AATT	3 cut(s)	522, 710, 870
MluI	ACGCGT	1 cut(s)	196
MluNI	TGGCCA	1 cut(s)	505
MmeI	TCCRAC	2 cut(s)	102, 766
Mox20I	TGGCCA	1 cut(s)	505
MscI	TGGCCA	1 cut(s)	505
MseI	TTAA	2 cut(s)	462, 942
Msp20I	TGGCCA	1 cut(s)	505
MspR9I	CCNGG	2 cut(s)	366, 844
MvaI	CCWGG	2 cut(s)	366, 844
MvnI	CGCG	1 cut(s)	198
MwoI	GCNNNNNNNGC	8 cut(s)	17, 446, 478, 695, 811, 839, 953, 962
NdeII	GATC	2 cut(s)	340, 405
NlaIII	CATG	6 cut(s)	390, 453, 579, 821, 1000, 1118
NlaIV	GGNNCC	2 cut(s)	587, 728
NmeAIII	GCCGAG	1 cut(s)	715
NmuCI	GTSAC	2 cut(s)	511, 979
PcsI	WCGNNNNNNNCGW	1 cut(s)	340
PfeI	GAWTC	5 cut(s)	74, 241, 269, 322, 925
PflMI	CCANNNNNTGG	1 cut(s)	992
PfoI	TCCNGGA	1 cut(s)	364
PkrI	GCNGC	4 cut(s)	68, 471, 781, 835
PpuMI	RGGWCCY	1 cut(s)	586
Psp124BI	GAGCTC	1 cut(s)	640
Psp5II	RGGWCCY	1 cut(s)	586
Psp6I	CCWGG	2 cut(s)	364, 842
PspGI	CCWGG	2 cut(s)	364, 842
PspN4I	GGNNCC	2 cut(s)	587, 728
PspPI	GGNCC	2 cut(s)	586, 726
PspPPI	RGGWCCY	1 cut(s)	586
PsuI	RGATCY	1 cut(s)	405
SacI	GAGCTC	1 cut(s)	640
SaqAI	TTAA	2 cut(s)	462, 942
SatI	GCNGC	4 cut(s)	67, 470, 780, 834
Sau3AI	GATC	2 cut(s)	340, 405
Sau96I	GGNCC	2 cut(s)	586, 726
ScrFI	CCNGG	2 cut(s)	366, 844
SduI	GDGCHC	1 cut(s)	640
SfaNI	GCATC	2 cut(s)	427, 823
SfcI	CTRYAG	1 cut(s)	185
SinI	GGWCC	1 cut(s)	586
SmlI	CTYRAG	1 cut(s)	884
SmoI	CTYRAG	1 cut(s)	884
Sse9I	AATT	3 cut(s)	522, 710, 870
SsiI	CCGC	4 cut(s)	66, 469, 779, 1101
SspI	AATATT	1 cut(s)	206
SspMI	CTAG	9 cut(s)	96, 171, 266, 284, 329, 837, 1049, 1070, 1091
SstI	GAGCTC	1 cut(s)	640
StyD4I	CCNGG	2 cut(s)	364, 842
StyI	CCWWGG	1 cut(s)	95
TaaI	ACNGT	1 cut(s)	597
TaiI	ACGT	1 cut(s)	859
TaqI	TCGA	1 cut(s)	863
TasI	AATT	3 cut(s)	522, 710, 870
TauI	GCSGC	3 cut(s)	69, 472, 782
TfiI	GAWTC	5 cut(s)	74, 241, 269, 322, 925
Tru1I	TTAA	2 cut(s)	462, 942
Tru9I	TTAA	2 cut(s)	462, 942
TscAI	CASTG	2 cut(s)	513, 1063
TseFI	GTSAC	2 cut(s)	511, 979
TseI	GCWGC	1 cut(s)	833
Tsp45I	GTSAC	2 cut(s)	511, 979
TspDTI	ATGAA	3 cut(s)	17, 843, 1077
TspGWI	ACGGA	1 cut(s)	707
TspRI	CASTG	2 cut(s)	513, 1063
Van91I	CCANNNNNTGG	1 cut(s)	992
VpaK11BI	GGWCC	1 cut(s)	586
XbaI	TCTAGA	3 cut(s)	265, 283, 1048
XmaJI	CCTAGG	1 cut(s)	95
XmiI	GTMKAC	1 cut(s)	383
XspI	CTAG	9 cut(s)	96, 171, 266, 284, 329, 837, 1049, 1070, 1091

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.