Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0011885

Physical Location & Seq

Genomic Coordinates Reverse (-)

30852729 .. 30854162

Gene Structure 1434 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0273200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGTTGACAATTGTGAAGGAAATGTCGATTCATGTCGGTGTGCTCGTCGCCACATACATCAGCTGCCATGTGCCCATGAAATTGCCTCATACAAAAGTAGTAATAATCCCATTCCACTTGATTGCATTCATCCTCATTGGAGGAAGTTAGATTTCAGCATACTCCCACTAAGGAGCAGCAGCAGCAGGTCAAATGTTGTTTATGTGAAACCACATATGATAAGATTTGAGAAGTGGTTTGAGGAACAAAATTATGATAATAAGAAACAACTTTTATTGAAGTTAGAAGAGATCATGAATCCGAGTTCTACATCACTTAGAGAGCCACAAGTGAAAACCAATAATCGAGGGCGTCCACGTAAAGAAGATACTTCCACTACTCGTTTACCTTCTGCCTTTGATCATTCATCGAATCCTACAGTTGGGTCTAGACCTCAGAGAAAGAAATTAAAGAAGCTTTTGAAGAATCAACGAGAAGCAGAGACTAAAGAGTCGCAAGTATCCAAGAAAAGGTTAAATAAAGAGTTTAAAAATTCAAAACTCAAGGTGTCAAACAACACTCACTCCACGATACCACCTAGATTGATGTATGAATATACGACACTATTTCCTACTATGTATCAACAGTACATTGTAAACCAAACTGATGTTGATATGGATGGAAATTGTGGATATATAGTCATTGCTATCTCAATGAGGTTTGGTCATGATGGTTGGCGTACGGTAAATTTGATATCTCAATCTGTTCCAATTCCTCCAATTACTCCTCTATGGCACATGTACCAAATTAATAATGGACAGTTGTACCATATCTATGAACAACGCATAGATCAATTCAAGAAACTCAAAAATTTGGAAGACGTTGCCACCAGAGATACATTTGCAGACATTATGCATCTTGATATCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005791 GO:0006605 GO:0006612 GO:0006620 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0030867 GO:0031090 GO:0031205 GO:0031207 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0098588 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 map03060 map04141

Pfam Domains

Protein Families

Sec62

Protein Analysis

303

Amino Acids

35.46

Weight (kDa)

9.38

Isoelectric Point (pI)

42.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20920 AT3G20920
fragaria_vesca	FvH4_3g28770
malus_domestica	MD03G1174500.v1.1 MD11G1192300.v1.1
prunus_persica	Prupe.4G250000_v2.0.a1
pyrus_communis	pycom03g13190 pycom11g16810
rosa_chinensis	RchiOBHm_Chr5g0052271
rosa_laevigata	RLG00000034829
rosa_multiflora	Rmu_sc0009513.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028110
rosa_rugosa	Rorug05G0273200
rosa_samantha	Rh5AG346100 Rh5BG356800 Rh5CG382100 Rh5DG372100
rosa_wichuraiana	Rw5G032640 Rw5G032680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	490
Acc36I	ACCTGC	1 cut(s)	177
AcsI	RAATTY	3 cut(s)	532, 727, 850
AcyI	GRCGYC	1 cut(s)	352
AfaI	GTAC	4 cut(s)	629, 721, 782, 806
AfiI	CCNNNNNNNGG	2 cut(s)	422, 510
AflIII	ACRYGT	1 cut(s)	777
AgsI	TTSAA	4 cut(s)	280, 463, 537, 838
AluBI	AGCT	2 cut(s)	64, 457
AluI	AGCT	2 cut(s)	64, 457
Alw21I	GWGCWC	1 cut(s)	46
Alw26I	GTCTC	1 cut(s)	476
ApeKI	GCWGC	4 cut(s)	64, 177, 180, 183
ApoI	RAATTY	3 cut(s)	532, 727, 850
AseI	ATTAAT	1 cut(s)	789
BaeGI	GKGCMC	1 cut(s)	76
BaeI	ACNNNNGTAYC	2 cut(s)	788, 821
BbsI	GAAGAC	1 cut(s)	864
Bbv12I	GWGCWC	1 cut(s)	46
BbvI	GCAGC	4 cut(s)	51, 189, 192, 195
BccI	CCATC	2 cut(s)	653, 704
BciVI	GTATCC	1 cut(s)	511
BclI	TGATCA	1 cut(s)	400
BcoDI	GTCTC	1 cut(s)	476
BfaI	CTAG	2 cut(s)	429, 579
BfmI	CTRYAG	1 cut(s)	417
BfuAI	ACCTGC	1 cut(s)	177
BfuI	GTATCC	1 cut(s)	511
BisI	GCNGC	4 cut(s)	65, 178, 181, 184
BlsI	GCNGC	4 cut(s)	66, 179, 182, 185
BmsI	GCATC	1 cut(s)	904
BpiI	GAAGAC	1 cut(s)	864
BpuEI	CTTGAG	1 cut(s)	527
Bsa29I	ATCGAT	1 cut(s)	906
BsaAI	YACGTR	1 cut(s)	359
BsaHI	GRCGYC	1 cut(s)	352
BsaXI	ACNNNNNCTCC	2 cut(s)	548, 578
Bsc4I	CCNNNNNNNGG	2 cut(s)	422, 510
Bse3DI	GCAATG	1 cut(s)	681
BseCI	ATCGAT	1 cut(s)	906
BseGI	GGATG	2 cut(s)	130, 664
BseLI	CCNNNNNNNGG	2 cut(s)	422, 510
BseMI	GCAATG	1 cut(s)	681
BseMII	CTCAG	1 cut(s)	449
BseRI	GAGGAG	1 cut(s)	756
BseSI	GKGCMC	1 cut(s)	76
BseXI	GCAGC	4 cut(s)	51, 189, 192, 195
BshVI	ATCGAT	1 cut(s)	906
BsiHKAI	GWGCWC	1 cut(s)	46
BsiWI	CGTACG	1 cut(s)	719
BslI	CCNNNNNNNGG	2 cut(s)	422, 510
BsmAI	GTCTC	1 cut(s)	476
BsmI	GAATGC	1 cut(s)	126
Bsp1286I	GDGCHC	2 cut(s)	46, 76
Bsp143I	GATC	3 cut(s)	291, 400, 829
BspCNI	CTCAG	1 cut(s)	448
BspDI	ATCGAT	1 cut(s)	906
BspHI	TCATGA	2 cut(s)	294, 706
BspMI	ACCTGC	1 cut(s)	177
BsrDI	GCAATG	1 cut(s)	681
BssMI	GATC	3 cut(s)	291, 400, 829
BssNI	GRCGYC	1 cut(s)	352
Bst4CI	ACNGT	4 cut(s)	421, 627, 724, 801
Bst6I	CTCTTC	1 cut(s)	282
BstACI	GRCGYC	1 cut(s)	352
BstBAI	YACGTR	1 cut(s)	359
BstDEI	CTNAG	3 cut(s)	170, 317, 435
BstF5I	GGATG	2 cut(s)	130, 664
BstKTI	GATC	3 cut(s)	294, 403, 832
BstMAI	GTCTC	1 cut(s)	476
BstMBI	GATC	3 cut(s)	291, 400, 829
BstMWI	GCNNNNNNNGC	1 cut(s)	183
BstNSI	RCATGY	1 cut(s)	781
BstSFI	CTRYAG	1 cut(s)	417
BstSLI	GKGCMC	1 cut(s)	76
BstV1I	GCAGC	4 cut(s)	51, 189, 192, 195
BstV2I	GAAGAC	1 cut(s)	864
Bsu15I	ATCGAT	1 cut(s)	906
BsuI	GTATCC	1 cut(s)	511
BsuTUI	ATCGAT	1 cut(s)	906
BtsCI	GGATG	2 cut(s)	130, 664
BveI	ACCTGC	1 cut(s)	177
CciI	TCATGA	2 cut(s)	294, 706
ClaI	ATCGAT	1 cut(s)	906
CseI	GACGC	1 cut(s)	341
Csp6I	GTAC	4 cut(s)	628, 720, 781, 805
CspCI	CAANNNNNGTGG	2 cut(s)	564, 599
CviAII	CATG	6 cut(s)	33, 69, 77, 295, 707, 778
CviJI	RGCY	3 cut(s)	64, 325, 457
CviKI_1	RGCY	3 cut(s)	64, 325, 457
CviQI	GTAC	4 cut(s)	628, 720, 781, 805
DdeI	CTNAG	3 cut(s)	170, 317, 435
DpnI	GATC	3 cut(s)	293, 402, 831
DpnII	GATC	3 cut(s)	291, 400, 829
DraI	TTTAAA	1 cut(s)	529
DrdI	GACNNNNNNGTC	1 cut(s)	490
DseDI	GACNNNNNNGTC	1 cut(s)	490
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
Eco32I	GATATC	2 cut(s)	735, 904
EcoRV	GATATC	2 cut(s)	735, 904
EcoT22I	ATGCAT	1 cut(s)	897
FaeI	CATG	6 cut(s)	36, 72, 80, 298, 710, 781
FatI	CATG	6 cut(s)	32, 68, 76, 294, 706, 777
FauNDI	CATATG	1 cut(s)	216
FbaI	TGATCA	1 cut(s)	400
Fnu4HI	GCNGC	4 cut(s)	65, 178, 181, 184
FokI	GGATG	2 cut(s)	117, 671
Fsp4HI	GCNGC	4 cut(s)	65, 178, 181, 184
FspBI	CTAG	2 cut(s)	429, 579
GluI	GCNGC	4 cut(s)	65, 178, 181, 184
HgaI	GACGC	1 cut(s)	341
Hin1I	GRCGYC	1 cut(s)	352
Hin1II	CATG	6 cut(s)	36, 72, 80, 298, 710, 781
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HindIII	AAGCTT	1 cut(s)	455
HinfI	GANTC	5 cut(s)	29, 298, 412, 466, 491
Hpy166II	GTNNAC	4 cut(s)	7, 356, 386, 637
Hpy188I	TCNGA	2 cut(s)	303, 438
Hpy188III	TCNNGA	5 cut(s)	295, 429, 707, 838, 899
Hpy8I	GTNNAC	4 cut(s)	7, 356, 386, 637
Hpy99I	CGWCG	1 cut(s)	51
HpyAV	CCTTC	2 cut(s)	11, 399
HpyCH4III	ACNGT	4 cut(s)	421, 627, 724, 801
HpyCH4IV	ACGT	2 cut(s)	358, 861
HpyCH4V	TGCA	3 cut(s)	126, 884, 895
HpyF10VI	GCNNNNNNNGC	1 cut(s)	183
HpyF3I	CTNAG	3 cut(s)	170, 317, 435
HpySE526I	ACGT	2 cut(s)	358, 861
Hsp92I	GRCGYC	1 cut(s)	352
Hsp92II	CATG	6 cut(s)	36, 72, 80, 298, 710, 781
Ksp22I	TGATCA	1 cut(s)	400
Kzo9I	GATC	3 cut(s)	291, 400, 829
LmnI	GCTCC	1 cut(s)	174
LpnPI	CCDG	2 cut(s)	172, 883
Lsp1109I	GCAGC	4 cut(s)	51, 189, 192, 195
LweI	GCATC	1 cut(s)	904
MaeI	CTAG	2 cut(s)	429, 579
MaeII	ACGT	2 cut(s)	358, 861
MalI	GATC	3 cut(s)	293, 402, 831
MboI	GATC	3 cut(s)	291, 400, 829
MboII	GAAGA	4 cut(s)	299, 377, 475, 869
MfeI	CAATTG	1 cut(s)	10
MhlI	GDGCHC	2 cut(s)	46, 76
MlyI	GAGTC	1 cut(s)	500
MnlI	CCTC	9 cut(s)	97, 135, 144, 235, 341, 444, 690, 765, 777
Mph1103I	ATGCAT	1 cut(s)	897
MseI	TTAA	5 cut(s)	449, 515, 528, 789, 910
MslI	CAYNNNNRTG	2 cut(s)	37, 813
MspA1I	CMGCKG	1 cut(s)	64
MunI	CAATTG	1 cut(s)	10
Mva1269I	GAATGC	1 cut(s)	126
MwoI	GCNNNNNNNGC	1 cut(s)	183
NdeI	CATATG	1 cut(s)	216
NdeII	GATC	3 cut(s)	291, 400, 829
NlaIII	CATG	6 cut(s)	36, 72, 80, 298, 710, 781
NsiI	ATGCAT	1 cut(s)	897
NspI	RCATGY	1 cut(s)	781
PagI	TCATGA	2 cut(s)	294, 706
PciI	ACATGT	1 cut(s)	777
PcsI	WCGNNNNNNNCGW	1 cut(s)	43
PctI	GAATGC	1 cut(s)	126
PfeI	GAWTC	4 cut(s)	29, 298, 412, 466
Pfl23II	CGTACG	1 cut(s)	719
PkrI	GCNGC	4 cut(s)	66, 179, 182, 185
PleI	GAGTC	1 cut(s)	499
PpsI	GAGTC	1 cut(s)	499
Ppu21I	YACGTR	1 cut(s)	359
PscI	ACATGT	1 cut(s)	777
PshBI	ATTAAT	1 cut(s)	789
PspLI	CGTACG	1 cut(s)	719
PvuII	CAGCTG	1 cut(s)	64
RsaI	GTAC	4 cut(s)	629, 721, 782, 806
RsaNI	GTAC	4 cut(s)	628, 720, 781, 805
RseI	CAYNNNNRTG	2 cut(s)	37, 813
SaqAI	TTAA	5 cut(s)	449, 515, 528, 789, 910
SatI	GCNGC	4 cut(s)	65, 178, 181, 184
Sau3AI	GATC	3 cut(s)	291, 400, 829
SchI	GAGTC	1 cut(s)	500
SduI	GDGCHC	2 cut(s)	46, 76
SfaNI	GCATC	1 cut(s)	904
SfcI	CTRYAG	1 cut(s)	417
SmiMI	CAYNNNNRTG	2 cut(s)	37, 813
SmlI	CTYRAG	1 cut(s)	542
SmoI	CTYRAG	1 cut(s)	542
SspMI	CTAG	2 cut(s)	429, 579
TaaI	ACNGT	4 cut(s)	421, 627, 724, 801
TaiI	ACGT	2 cut(s)	361, 864
TaqI	TCGA	4 cut(s)	27, 346, 410, 906
TatI	WGTACW	1 cut(s)	627
TfiI	GAWTC	4 cut(s)	29, 298, 412, 466
Tru1I	TTAA	5 cut(s)	449, 515, 528, 789, 910
Tru9I	TTAA	5 cut(s)	449, 515, 528, 789, 910
TseI	GCWGC	4 cut(s)	64, 177, 180, 183
TspDTI	ATGAA	7 cut(s)	21, 93, 119, 311, 396, 606, 831
VspI	ATTAAT	1 cut(s)	789
XapI	RAATTY	3 cut(s)	532, 727, 850
XbaI	TCTAGA	1 cut(s)	428
XceI	RCATGY	1 cut(s)	781
XcmI	CCANNNNNNNNNTGG	1 cut(s)	791
XspI	CTAG	2 cut(s)	429, 579
Zsp2I	ATGCAT	1 cut(s)	897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.