AT3G21470

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015465
Physical Location & Seq
Forward (+)
7563503 .. 7565160
1658 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G21470.1

Sequence Viewer

Length: 1572 bp
ATGAATTTGGAGGAACATTTATCGTTAGGTGAGTTTCATGTGTCGAATCTTATAAAGAATCATATATCTAGAGGATCACCAATACAAGCTCTGGTTTTGTACGGAGGAATCCGCCGCAGAGGAGTGTATTTTCCGGGATGGGTTCCTTTGATTTTAAGGGCATGTGCTTGCGTTGTTCCACGTGTTGTTCTTGGGAAGCTGTTGCATTCTGAATCAATCAAGTTCGGTGTTTGTTCTGATGTTATGGTGGGAAGCTCTCTGATCAGTATGTATGGGAAATGTGGATGTGTAGTTTCTGCACGTAAGGTGTTTGACGAAATGCCTGAGAGAAACGTGGCTACTTGGAACGCTATGATTGGTGGGTATATGAGCAATGGTGATGCAGTTTTGGCTAGTGGATTGTTTGAAGAGATATCGGTTTGTAGAAATACGGTGACTTGGATCGAGATGATTAAAGGGTATGGGAAGAGAATAGAGATTGAGAAAGCTAGAGAATTGTTTGAGAGAATGCCTTTCGAGTTAAAGAATGTGAAGGCTTGGTCTGTGATGCTTGGAGTTTACGTTAATAATCGAAAAATGGAGGATGCAAGGAAGTTTTTCGAGGATATACCGGAGAAGAACGCCTTTGTATGGTCATTGATGATGTCTGGGTATTTTAGGATAGGTGATGTGCATGAAGCTAGAGCTATTTTTTATCGAGTTTTTGCTCGTGATTTGGTGATTTGGAACACTTTGATTGCTGGTTATGCACAGAATGGGTATTCTGATGATGCTATTGATGCTTTCTTTAATATGCAAGGAGAAGGGTATGAACCGGATGCGGTAACGGTTTCTAGTATTTTATCTGCTTGTGCTCAATCTGGTCGTCTTGATGTTGGCAGAGAAGTTCACTCTCTGATTAATCATAGAGGAATTGAGCTTAACCAGTTTGTTTCAAATGCTTTGATTGATATGTATGCGAAATGTGGGGATCTAGAGAATGCGACATCCGTGTTTGAGTCGATAAGTGTGAGAAGTGTAGCATGTTGTAACTCTATGATCTCGTGTCTAGCCATACATGGGAAAGGCAAAGAAGCTTTAGAGATGTTCAGCACGATGGAGAGCTTAGATTTAAAGCCTGACGAGATCACTTTTATAGCGGTTCTCACTGCTTGTGTCCATGGAGGCTTTCTAATGGAAGGTCTAAAGATATTCTCGGAGATGAAAACTCAAGACGTGAAACCGAATGTAAAGCATTTTGGATGTTTGATACATCTCTTGGGACGCTCCGGGAAATTGAAAGAAGCTTACAGATTGGTAAAAGAAATGCATGTGAAACCGAACGATACAGTATTGGGAGCTTTGCTTGGTGCATGTAAGGTTCATATGGATACAGAAATGGCTGAACAAGTGATGAAGATCATCGAGACTGCTGGAAGCATCACTAACAGTTACAGCGAGAACCATCTTGCATCGATATCGAACTTGTATGCACACACCGAAAGATGGCAAACAGCTGAAGCGTTGAGAGTAGAAATGGAGAAAAGAGGTCTTGAGAAATCCCCAGGGCTTAGCTCACTAGTTTTGACCTGA

Protein Analysis

523

Amino Acids

58.23

Weight (kDa)

6.45

Isoelectric Point (pI)

40.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 238 - 285 3.8e-11 PPR repeat family
PPR PF01535 240 - 269 3.3e-06 PPR repeat
PPR_2 PF13041 339 - 386 3.5e-09 PPR repeat family
PPR_3 PF13812 396 - 452 5.7e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 405 - 436 2.4e-06 PPR repeat
E_motif PF20431 480 - 519 2.8e-06 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015465)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21470
fragaria_vesca FvH4_2g14800 FvH4_7g25011
malus_domestica MD05G1012400.v1.1
prunus_persica Prupe.8G017700_v2.0.a1
pyrus_communis pycom05g00720
rosa_chinensis RchiOBHm_Chr6g0277371
rosa_laevigata RLG00000013306 RLG00000029733
rosa_multiflora Rmu_co8197674.1_g000001 Rmu_sc0000030.1_g000011
rosa_roxburghii Rroxscaffold_7G00191390
rosa_rugosa Rorug01G0093200 Rorug06G0107700
rosa_samantha Rh6AG218600 Rh6DG215300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 53
AciI CCGC 4 cut(s) 112, 115, 821, 1139
AclWI GGATC 3 cut(s) 82, 449, 978
AcsI RAATTY 1 cut(s) 4
AcuI CTGAAG 1 cut(s) 1518
AcvI CACGTG 1 cut(s) 182
AfaI GTAC 1 cut(s) 101
AfiI CCNNNNNNNGG 3 cut(s) 630, 1059, 1485
AflIII ACRYGT 1 cut(s) 181
AgsI TTSAA 3 cut(s) 407, 936, 1279
AhlI ACTAGT 1 cut(s) 1558
AjiI CACGTC 1 cut(s) 1216
AjnI CCWGG 1 cut(s) 1543
Alw21I GWGCWC 1 cut(s) 856
Alw26I GTCTC 1 cut(s) 1400
AlwI GGATC 3 cut(s) 82, 449, 978
ApoI RAATTY 1 cut(s) 4
AseI ATTAAT 1 cut(s) 900
Asp700I GAANNNNTTC 1 cut(s) 596
AsuC2I CCSGG 2 cut(s) 135, 1270
AsuHPI GGTGA 6 cut(s) 41, 69, 389, 445, 677, 730
BauI CACGAG 2 cut(s) 708, 1042
BbrPI CACGTG 1 cut(s) 182
Bbv12I GWGCWC 1 cut(s) 856
BccI CCATC 4 cut(s) 132, 1090, 1452, 1479
BcgI CGANNNNNNTGC 2 cut(s) 1440, 1474
BciT130I CCWGG 1 cut(s) 1545
BciVI GTATCC 1 cut(s) 1363
BclI TGATCA 1 cut(s) 261
BcnI CCSGG 2 cut(s) 135, 1270
BcoDI GTCTC 1 cut(s) 1400
BcuI ACTAGT 1 cut(s) 1558
BfaI CTAG 8 cut(s) 69, 393, 489, 681, 834, 974, 1049, 1559
BfuI GTATCC 1 cut(s) 1363
BisI GCNGC 1 cut(s) 115
BlpI GCTNAGC 1 cut(s) 1550
BlsI GCNGC 1 cut(s) 116
Bme1390I CCNGG 3 cut(s) 135, 1270, 1545
BmgBI CACGTC 1 cut(s) 1216
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 3 cut(s) 135, 1270, 1545
BmsI GCATC 8 cut(s) 370, 537, 574, 760, 769, 808, 1428, 1460
Bpu1102I GCTNAGC 1 cut(s) 1550
BpuEI CTTGAG 2 cut(s) 1194, 1553
BpuMI CCSGG 2 cut(s) 135, 1270
Bsa29I ATCGAT 1 cut(s) 1454
BsaAI YACGTR 2 cut(s) 182, 302
BsaBI GATNNNNATC 1 cut(s) 1397
BsaJI CCNNGG 3 cut(s) 1159, 1543, 1544
BsaWI WCCGGW 2 cut(s) 610, 814
BsaXI ACNNNNNCTCC 2 cut(s) 546, 576
Bsc4I CCNNNNNNNGG 3 cut(s) 630, 1059, 1485
Bse1I ACTGG 1 cut(s) 925
Bse3DI GCAATG 1 cut(s) 379
Bse8I GATNNNNATC 1 cut(s) 1397
BseBI CCWGG 1 cut(s) 1545
BseCI ATCGAT 1 cut(s) 1454
BseDI CCNNGG 3 cut(s) 1159, 1543, 1544
BseGI GGATG 6 cut(s) 143, 290, 589, 823, 986, 1247
BseJI GATNNNNATC 1 cut(s) 1397
BseLI CCNNNNNNNGG 3 cut(s) 630, 1059, 1485
BseMI GCAATG 1 cut(s) 379
BseMII CTCAG 1 cut(s) 315
BseNI ACTGG 1 cut(s) 925
BseRI GAGGAG 1 cut(s) 135
BsgI GTGCAG 1 cut(s) 282
BshVI ATCGAT 1 cut(s) 1454
BsiHKAI GWGCWC 1 cut(s) 856
BsiSI CCGG 4 cut(s) 134, 611, 815, 1269
BslFI GGGAC 1 cut(s) 1275
BslI CCNNNNNNNGG 3 cut(s) 630, 1059, 1485
BsmAI GTCTC 1 cut(s) 1400
BsmFI GGGAC 1 cut(s) 1275
BsmI GAATGC 3 cut(s) 205, 513, 985
Bsp1286I GDGCHC 1 cut(s) 856
Bsp143I GATC 7 cut(s) 74, 261, 441, 970, 1038, 1125, 1398
Bsp1720I GCTNAGC 1 cut(s) 1550
Bsp19I CCATGG 1 cut(s) 1159
BspACI CCGC 4 cut(s) 112, 115, 821, 1139
BspCNI CTCAG 1 cut(s) 316
BspDI ATCGAT 1 cut(s) 1454
BspLI GGNNCC 1 cut(s) 144
BspPI GGATC 3 cut(s) 82, 449, 978
BsrDI GCAATG 1 cut(s) 379
BsrI ACTGG 1 cut(s) 925
BssECI CCNNGG 3 cut(s) 1159, 1543, 1544
BssMI GATC 7 cut(s) 74, 261, 441, 970, 1038, 1125, 1398
BssSI CACGAG 2 cut(s) 708, 1042
BssT1I CCWWGG 1 cut(s) 1159
Bst2BI CACGAG 2 cut(s) 708, 1042
Bst2UI CCWGG 1 cut(s) 1545
Bst4CI ACNGT 4 cut(s) 433, 829, 1330, 1430
Bst6I CTCTTC 2 cut(s) 402, 461
BstBAI YACGTR 2 cut(s) 182, 302
BstC8I GCNNGC 1 cut(s) 169
BstDEI CTNAG 3 cut(s) 324, 1105, 1550
BstDSI CCRYGG 1 cut(s) 1159
BstF5I GGATG 6 cut(s) 143, 290, 589, 823, 986, 1247
BstKTI GATC 7 cut(s) 77, 264, 444, 973, 1041, 1128, 1401
BstMAI GTCTC 1 cut(s) 1400
BstMBI GATC 7 cut(s) 74, 261, 441, 970, 1038, 1125, 1398
BstMWI GCNNNNNNNGC 3 cut(s) 389, 746, 779
BstNI CCWGG 1 cut(s) 1545
BstNSI RCATGY 4 cut(s) 165, 1026, 1313, 1356
BstSCI CCNGG 3 cut(s) 133, 1268, 1543
BstX2I RGATCY 1 cut(s) 970
BstYI RGATCY 1 cut(s) 970
Bsu15I ATCGAT 1 cut(s) 1454
BsuI GTATCC 1 cut(s) 1363
BsuTUI ATCGAT 1 cut(s) 1454
BtgI CCRYGG 1 cut(s) 1159
BtrI CACGTC 1 cut(s) 1216
BtsCI GGATG 6 cut(s) 143, 290, 589, 823, 986, 1247
BtsI GCAGTG 1 cut(s) 1146
BtsIMutI CAGTG 1 cut(s) 1146
Cac8I GCNNGC 1 cut(s) 169
ClaI ATCGAT 1 cut(s) 1454
CseI GACGC 1 cut(s) 1272
Csp6I GTAC 1 cut(s) 100
CviAII CATG 8 cut(s) 38, 162, 674, 1023, 1058, 1160, 1310, 1353
CviQI GTAC 1 cut(s) 100
DdeI CTNAG 3 cut(s) 324, 1105, 1550
DpnI GATC 7 cut(s) 76, 263, 443, 972, 1040, 1127, 1400
DpnII GATC 7 cut(s) 74, 261, 441, 970, 1038, 1125, 1398
DraI TTTAAA 1 cut(s) 1113
Eam1104I CTCTTC 2 cut(s) 402, 461
EarI CTCTTC 2 cut(s) 402, 461
EciI GGCGGA 1 cut(s) 101
Eco130I CCWWGG 1 cut(s) 1159
Eco32I GATATC 2 cut(s) 414, 1458
Eco57I CTGAAG 1 cut(s) 1518
Eco72I CACGTG 1 cut(s) 182
EcoRII CCWGG 1 cut(s) 1543
EcoRV GATATC 2 cut(s) 414, 1458
EcoT14I CCWWGG 1 cut(s) 1159
EcoT22I ATGCAT 1 cut(s) 1311
ErhI CCWWGG 1 cut(s) 1159
FaeI CATG 8 cut(s) 41, 165, 677, 1026, 1061, 1163, 1313, 1356
FalI AAGNNNNNCTT 2 cut(s) 608, 640
FaqI GGGAC 1 cut(s) 1275
FatI CATG 8 cut(s) 37, 161, 673, 1022, 1057, 1159, 1309, 1352
FauNDI CATATG 1 cut(s) 1365
FbaI TGATCA 1 cut(s) 261
Fnu4HI GCNGC 1 cut(s) 115
FokI GGATG 6 cut(s) 150, 297, 596, 830, 973, 1254
Fsp4HI GCNGC 1 cut(s) 115
FspBI CTAG 8 cut(s) 69, 393, 489, 681, 834, 974, 1049, 1559
GluI GCNGC 1 cut(s) 115
HapII CCGG 4 cut(s) 134, 611, 815, 1269
HgaI GACGC 1 cut(s) 1272
Hin1II CATG 8 cut(s) 41, 165, 677, 1026, 1061, 1163, 1313, 1356
HindIII AAGCTT 2 cut(s) 1074, 1284
HinfI GANTC 5 cut(s) 46, 58, 108, 212, 998
HpaII CCGG 4 cut(s) 134, 611, 815, 1269
HphI GGTGA 6 cut(s) 41, 69, 389, 445, 677, 730
Hpy166II GTNNAC 2 cut(s) 559, 889
Hpy188I TCNGA 6 cut(s) 211, 238, 261, 766, 897, 1198
Hpy188III TCNNGA 8 cut(s) 69, 445, 710, 869, 974, 1211, 1405, 1532
Hpy8I GTNNAC 2 cut(s) 559, 889
HpyAV CCTTC 3 cut(s) 526, 797, 1172
HpyCH4III ACNGT 4 cut(s) 433, 829, 1330, 1430
HpyCH4IV ACGT 5 cut(s) 181, 301, 333, 561, 1215
HpyF10VI GCNNNNNNNGC 3 cut(s) 389, 746, 779
HpyF3I CTNAG 3 cut(s) 324, 1105, 1550
HpySE526I ACGT 5 cut(s) 181, 301, 333, 561, 1215
Hsp92II CATG 8 cut(s) 41, 165, 677, 1026, 1061, 1163, 1313, 1356
Ksp22I TGATCA 1 cut(s) 261
Kzo9I GATC 7 cut(s) 74, 261, 441, 970, 1038, 1125, 1398
LmnI GCTCC 2 cut(s) 1271, 1337
LweI GCATC 8 cut(s) 370, 537, 574, 760, 769, 808, 1428, 1460
MaeI CTAG 8 cut(s) 69, 393, 489, 681, 834, 974, 1049, 1559
MaeII ACGT 5 cut(s) 181, 301, 333, 561, 1215
MaeIII GTNAC 4 cut(s) 433, 823, 1028, 1430
MalI GATC 7 cut(s) 76, 263, 443, 972, 1040, 1127, 1400
MboI GATC 7 cut(s) 74, 261, 441, 970, 1038, 1125, 1398
MboII GAAGA 4 cut(s) 419, 478, 628, 1408
MflI RGATCY 1 cut(s) 970
MhlI GDGCHC 1 cut(s) 856
MluCI AATT 4 cut(s) 4, 494, 912, 1274
MlyI GAGTC 1 cut(s) 1007
MnlI CCTC 9 cut(s) 4, 65, 98, 113, 574, 595, 902, 1157, 1520
Mph1103I ATGCAT 1 cut(s) 1311
MroXI GAANNNNTTC 1 cut(s) 596
MseI TTAA 8 cut(s) 155, 453, 521, 564, 789, 900, 921, 1112
MspA1I CMGCKG 1 cut(s) 1496
MspI CCGG 4 cut(s) 134, 611, 815, 1269
MspR9I CCNGG 3 cut(s) 135, 1270, 1545
Mva1269I GAATGC 3 cut(s) 205, 513, 985
MvaI CCWGG 1 cut(s) 1545
MwoI GCNNNNNNNGC 3 cut(s) 389, 746, 779
NciI CCSGG 2 cut(s) 135, 1270
NcoI CCATGG 1 cut(s) 1159
NdeI CATATG 1 cut(s) 1365
NdeII GATC 7 cut(s) 74, 261, 441, 970, 1038, 1125, 1398
NlaIII CATG 8 cut(s) 41, 165, 677, 1026, 1061, 1163, 1313, 1356
NlaIV GGNNCC 1 cut(s) 144
NmuCI GTSAC 1 cut(s) 433
NsiI ATGCAT 1 cut(s) 1311
NspI RCATGY 4 cut(s) 165, 1026, 1313, 1356
PasI CCCWGGG 1 cut(s) 1544
PctI GAATGC 3 cut(s) 205, 513, 985
PdmI GAANNNNTTC 1 cut(s) 596
PfeI GAWTC 4 cut(s) 46, 58, 108, 212
PfoI TCCNGGA 2 cut(s) 133, 1268
PkrI GCNGC 1 cut(s) 116
PleI GAGTC 1 cut(s) 1006
PmaCI CACGTG 1 cut(s) 182
PmlI CACGTG 1 cut(s) 182
PpsI GAGTC 1 cut(s) 1006
Ppu21I YACGTR 2 cut(s) 182, 302
PshBI ATTAAT 1 cut(s) 900
PsiI TTATAA 1 cut(s) 53
Psp6I CCWGG 1 cut(s) 1543
PspCI CACGTG 1 cut(s) 182
PspGI CCWGG 1 cut(s) 1543
PspN4I GGNNCC 1 cut(s) 144
PsuI RGATCY 1 cut(s) 970
PvuII CAGCTG 1 cut(s) 1496
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
SaqAI TTAA 8 cut(s) 155, 453, 521, 564, 789, 900, 921, 1112
SatI GCNGC 1 cut(s) 115
Sau3AI GATC 7 cut(s) 74, 261, 441, 970, 1038, 1125, 1398
SchI GAGTC 1 cut(s) 1007
ScrFI CCNGG 3 cut(s) 135, 1270, 1545
SduI GDGCHC 1 cut(s) 856
SfaNI GCATC 8 cut(s) 370, 537, 574, 760, 769, 808, 1428, 1460
SmlI CTYRAG 2 cut(s) 1209, 1532
SmoI CTYRAG 2 cut(s) 1209, 1532
SpeI ACTAGT 1 cut(s) 1558
Sse9I AATT 4 cut(s) 4, 494, 912, 1274
SsiI CCGC 4 cut(s) 112, 115, 821, 1139
SspMI CTAG 8 cut(s) 69, 393, 489, 681, 834, 974, 1049, 1559
StyD4I CCNGG 3 cut(s) 133, 1268, 1543
StyI CCWWGG 1 cut(s) 1159
TaaI ACNGT 4 cut(s) 433, 829, 1330, 1430
TaiI ACGT 5 cut(s) 184, 304, 336, 564, 1218
TasI AATT 4 cut(s) 4, 494, 912, 1274
TauI GCSGC 1 cut(s) 117
TfiI GAWTC 4 cut(s) 46, 58, 108, 212
Tru1I TTAA 8 cut(s) 155, 453, 521, 564, 789, 900, 921, 1112
Tru9I TTAA 8 cut(s) 155, 453, 521, 564, 789, 900, 921, 1112
TscAI CASTG 1 cut(s) 1153
TseFI GTSAC 1 cut(s) 433
Tsp45I GTSAC 1 cut(s) 433
TspDTI ATGAA 7 cut(s) 17, 26, 690, 825, 1217, 1352, 1409
TspGWI ACGGA 2 cut(s) 117, 979
TspRI CASTG 1 cut(s) 1153
VspI ATTAAT 1 cut(s) 900
XapI RAATTY 1 cut(s) 4
XbaI TCTAGA 2 cut(s) 68, 973
XceI RCATGY 4 cut(s) 165, 1026, 1313, 1356
XmnI GAANNNNTTC 1 cut(s) 596
XspI CTAG 8 cut(s) 69, 393, 489, 681, 834, 974, 1049, 1559
Zsp2I ATGCAT 1 cut(s) 1311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.