Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0015465

Physical Location & Seq

Genomic Coordinates Reverse (-)

48000858 .. 48002163

Gene Structure 1306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029733

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGTTTGCGAAATGCGGGGACGTTTTTGAGTCTCGGAAAGCGTTTGATTATATGCCTGAGAGAAATGTGGTAAGTTGGAATGCCATGATTAGTGGGTACTGGAGAAATGGGGATGCCGCAACTGCATTGGTTTTGTTTGAGAACATGTCAGTGCGGACGTATGCGACTTGGGCTGAGATGATCACCGGCAATGGGCAGATGGAGATGGCGAGGCAAGTTTTCGAGGCAATGCCTATGCCCCAGCGCAATCACTTCGTTTGGTCATCAATGATTTCCGGGTATTGCAAGCTAGGTTATGTTGAGGAGGCTAAGATCGTTTCCGATAGAATCCCAGTCCGGAACTTGGTGAATTGGAATTCGATGATATCTGGATATGCGCAAAATGGCTTTTGTGAGGAAGCTTTGAAAGCGTTTGAGAACATGCGAGCCCAAGGCTTTGAGCCAGATGAATTTACTGTTGTGAGTGTTTTATCTGCACGTGCTCACTCTGGGCTATTAGATGTTGGCAAGGATATACATAACATGTTGAGTCATAAAAGGATAAAGCTTAATCAGATTGTTCTCAATGCACTTGTAGACATGTATGCAAAATGTGGCGACTTGATCAATGCAAGGTTGATCTTTGATGAGATGACTGAGAGGAACGGTGCTTGTTGGAATGCTATGATTTCAAGCATGGCTATTCATGGACAGTGCAAGGAGGCTCTTGAATTGTTTAGCAGAATGGAGGATTCAAATGAAAAGCCTGATGAGATAACCTTTCTTTCTGTTCTGTCAGCTTGTGCGCATGGAGGTTTAGTAGATGAAGGCATGGGACTTCTCTCCAAGATGCAGAAGAAATATGGTTTGGATGCGGGAATTAAGCATTTTGGGTGCTTAGTTGACCTTTTGGGACGGGCTGGAAGGTTAAGAGAGGCTTACGCTTTAGTTAAAAGTATGCCCATGAAACCCAATGACATGGTTTGGGGAGCTATGCTTGGAGCTTGCCGGATTTATATGGGTATGGAAATGACAGAACAGGTAGCAAAGGATATTAGCGCCCAAAATTCATGCATTCAGTCGGGCGATAATTCACATTATGTTCTTCTGTCAAATATTTATGCTGCTTCTGATAGATGGGAGAAAGCTGAAAGGACAAGAATGGACTTGGTAAACGAAGGCTTTCAAAAGACACCTGCTCACAGTGCATTTATGCCCTGCGGCGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

403

Amino Acids

45.01

Weight (kDa)

5.9

Isoelectric Point (pI)

36.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	21 - 51	5.6e-06	PPR repeat family
PPR_2	PF13041	114 - 159	4.7e-10	PPR repeat family
PPR	PF01535	117 - 146	1.6e-08	PPR repeat
PPR_2	PF13041	217 - 263	7e-10	PPR repeat family
PPR	PF01535	218 - 245	1e-06	PPR repeat
E_motif	PF20431	352 - 394	4.7e-08	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015465)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21470
fragaria_vesca	FvH4_2g14800 FvH4_7g25011
malus_domestica	MD05G1012400.v1.1
prunus_persica	Prupe.8G017700_v2.0.a1
pyrus_communis	pycom05g00720
rosa_chinensis	RchiOBHm_Chr6g0277371
rosa_laevigata	RLG00000013306 RLG00000029733
rosa_multiflora	Rmu_co8197674.1_g000001 Rmu_sc0000030.1_g000011
rosa_roxburghii	Rroxscaffold_7G00191390
rosa_rugosa	Rorug01G0093200 Rorug06G0107700
rosa_samantha	Rh6AG218600 Rh6DG215300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1183
Acc16I	TGCGCA	2 cut(s)	378, 786
Acc36I	ACCTGC	1 cut(s)	1183
AccI	GTMKAC	1 cut(s)	576
AccIII	TCCGGA	1 cut(s)	336
AciI	CCGC	5 cut(s)	15, 117, 154, 854, 1200
AcsI	RAATTY	3 cut(s)	355, 449, 1045
AcvI	CACGTG	1 cut(s)	479
AfaI	GTAC	1 cut(s)	98
AfiI	CCNNNNNNNGG	2 cut(s)	192, 343
AflIII	ACRYGT	3 cut(s)	144, 522, 579
AgsI	TTSAA	5 cut(s)	406, 672, 710, 735, 1166
AjuI	GAANNNNNNNTTGG	2 cut(s)	830, 862
AluBI	AGCT	7 cut(s)	289, 401, 547, 779, 971, 983, 1127
AluI	AGCT	7 cut(s)	289, 401, 547, 779, 971, 983, 1127
Alw21I	GWGCWC	1 cut(s)	484
Alw26I	GTCTC	1 cut(s)	36
Aor13HI	TCCGGA	1 cut(s)	336
ApeKI	GCWGC	1 cut(s)	1103
ApoI	RAATTY	3 cut(s)	355, 449, 1045
Asp700I	GAANNNNTTC	1 cut(s)	1161
AspLEI	GCGC	4 cut(s)	246, 379, 787, 1040
AsuC2I	CCSGG	1 cut(s)	277
AsuHPI	GGTGA	2 cut(s)	175, 358
BanII	GRGCYC	1 cut(s)	430
BbrPI	CACGTG	1 cut(s)	479
Bbv12I	GWGCWC	1 cut(s)	484
BbvI	GCAGC	1 cut(s)	1090
BccI	CCATC	3 cut(s)	193, 199, 1110
BcgI	CGANNNNNNTGC	2 cut(s)	235, 269
BclI	TGATCA	2 cut(s)	180, 603
BcnI	CCSGG	1 cut(s)	277
BcoDI	GTCTC	1 cut(s)	36
BfaI	CTAG	1 cut(s)	290
BfoI	RGCGCY	1 cut(s)	1041
BfuAI	ACCTGC	1 cut(s)	1183
BisI	GCNGC	3 cut(s)	117, 1104, 1201
BlsI	GCNGC	3 cut(s)	118, 1105, 1202
Bme1390I	CCNGG	1 cut(s)	277
BmrFI	CCNGG	1 cut(s)	277
BmrI	ACTGGG	1 cut(s)	326
BmsI	GCATC	3 cut(s)	103, 819, 841
BmuI	ACTGGG	1 cut(s)	326
BpmI	CTGGAG	1 cut(s)	121
BpuMI	CCSGG	1 cut(s)	277
BsaAI	YACGTR	1 cut(s)	479
BsaJI	CCNNGG	1 cut(s)	430
BsaWI	WCCGGW	1 cut(s)	336
BsaXI	ACNNNNNCTCC	2 cut(s)	783, 813
Bsc4I	CCNNNNNNNGG	2 cut(s)	192, 343
Bse118I	RCCGGY	1 cut(s)	185
Bse1I	ACTGG	2 cut(s)	104, 332
Bse3DI	GCAATG	2 cut(s)	196, 234
BseAI	TCCGGA	1 cut(s)	336
BseDI	CCNNGG	1 cut(s)	430
BseGI	GGATG	2 cut(s)	118, 856
BseLI	CCNNNNNNNGG	2 cut(s)	192, 343
BseMI	GCAATG	2 cut(s)	196, 234
BseMII	CTCAG	3 cut(s)	48, 165, 627
BseNI	ACTGG	2 cut(s)	104, 332
BseRI	GAGGAG	1 cut(s)	317
BseXI	GCAGC	1 cut(s)	1090
BseYI	CCCAGC	1 cut(s)	240
BsgI	GTGCAG	1 cut(s)	459
BsiHKAI	GWGCWC	1 cut(s)	484
BsiSI	CCGG	4 cut(s)	186, 276, 337, 988
BslFI	GGGAC	3 cut(s)	32, 828, 906
BslI	CCNNNNNNNGG	2 cut(s)	192, 343
BsmAI	GTCTC	1 cut(s)	36
BsmFI	GGGAC	3 cut(s)	32, 828, 906
BsmI	GAATGC	3 cut(s)	85, 664, 1053
Bsp1286I	GDGCHC	2 cut(s)	430, 484
Bsp13I	TCCGGA	1 cut(s)	336
Bsp143I	GATC	4 cut(s)	180, 312, 603, 618
BspACI	CCGC	5 cut(s)	15, 117, 154, 854, 1200
BspCNI	CTCAG	3 cut(s)	49, 166, 628
BspEI	TCCGGA	1 cut(s)	336
BspMI	ACCTGC	1 cut(s)	1183
BsrDI	GCAATG	2 cut(s)	196, 234
BsrFI	RCCGGY	1 cut(s)	185
BsrI	ACTGG	2 cut(s)	104, 332
BssAI	RCCGGY	1 cut(s)	185
BssECI	CCNNGG	1 cut(s)	430
BssMI	GATC	4 cut(s)	180, 312, 603, 618
BssT1I	CCWWGG	1 cut(s)	430
Bst4CI	ACNGT	4 cut(s)	457, 647, 693, 1184
BstBAI	YACGTR	1 cut(s)	479
BstC8I	GCNNGC	3 cut(s)	287, 426, 985
BstDEI	CTNAG	5 cut(s)	57, 174, 309, 636, 877
BstF5I	GGATG	2 cut(s)	118, 856
BstH2I	RGCGCY	1 cut(s)	1041
BstHHI	GCGC	4 cut(s)	246, 379, 787, 1040
BstKTI	GATC	4 cut(s)	183, 315, 606, 621
BstMAI	GTCTC	1 cut(s)	36
BstMBI	GATC	4 cut(s)	180, 312, 603, 618
BstMWI	GCNNNNNNNGC	4 cut(s)	122, 170, 407, 1184
BstNSI	RCATGY	4 cut(s)	148, 424, 526, 583
BstSCI	CCNGG	1 cut(s)	275
BstV1I	GCAGC	1 cut(s)	1090
BstXI	CCANNNNNNTGG	1 cut(s)	958
BtsCI	GGATG	2 cut(s)	118, 856
BtsIMutI	CAGTG	3 cut(s)	156, 698, 1189
BveI	ACCTGC	1 cut(s)	1183
Cac8I	GCNNGC	3 cut(s)	287, 426, 985
CfoI	GCGC	4 cut(s)	246, 379, 787, 1040
Cfr10I	RCCGGY	1 cut(s)	185
Csp6I	GTAC	1 cut(s)	97
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	5 cut(s)	57, 174, 309, 636, 877
DpnI	GATC	4 cut(s)	182, 314, 605, 620
DpnII	GATC	4 cut(s)	180, 312, 603, 618
Eco130I	CCWWGG	1 cut(s)	430
Eco24I	GRGCYC	1 cut(s)	430
Eco32I	GATATC	1 cut(s)	366
Eco72I	CACGTG	1 cut(s)	479
EcoRI	GAATTC	1 cut(s)	355
EcoRV	GATATC	1 cut(s)	366
EcoT14I	CCWWGG	1 cut(s)	430
EcoT22I	ATGCAT	1 cut(s)	1055
EcoT38I	GRGCYC	1 cut(s)	430
ErhI	CCWWGG	1 cut(s)	430
FalI	AAGNNNNNCTT	2 cut(s)	901, 933
FaqI	GGGAC	3 cut(s)	32, 828, 906
FauI	CCCGC	2 cut(s)	8, 847
FbaI	TGATCA	2 cut(s)	180, 603
FblI	GTMKAC	1 cut(s)	576
Fnu4HI	GCNGC	3 cut(s)	117, 1104, 1201
FokI	GGATG	2 cut(s)	125, 863
FriOI	GRGCYC	1 cut(s)	430
Fsp4HI	GCNGC	3 cut(s)	117, 1104, 1201
FspAI	RTGCGCAY	1 cut(s)	786
FspBI	CTAG	1 cut(s)	290
FspI	TGCGCA	2 cut(s)	378, 786
GlaI	GCGC	4 cut(s)	245, 378, 786, 1039
GluI	GCNGC	3 cut(s)	117, 1104, 1201
GsaI	CCCAGC	1 cut(s)	244
GsuI	CTGGAG	1 cut(s)	121
HaeII	RGCGCY	1 cut(s)	1041
HapII	CCGG	4 cut(s)	186, 276, 337, 988
HhaI	GCGC	4 cut(s)	246, 379, 787, 1040
Hin6I	GCGC	4 cut(s)	244, 377, 785, 1038
HinP1I	GCGC	4 cut(s)	244, 377, 785, 1038
HincII	GTYRAC	1 cut(s)	883
HindII	GTYRAC	1 cut(s)	883
HindIII	AAGCTT	2 cut(s)	399, 545
HinfI	GANTC	4 cut(s)	29, 327, 529, 731
HpaII	CCGG	4 cut(s)	186, 276, 337, 988
HphI	GGTGA	2 cut(s)	175, 358
Hpy166II	GTNNAC	3 cut(s)	577, 883, 1153
Hpy188I	TCNGA	4 cut(s)	36, 322, 555, 1111
Hpy188III	TCNNGA	3 cut(s)	337, 369, 707
Hpy8I	GTNNAC	3 cut(s)	577, 883, 1153
HpyAV	CCTTC	3 cut(s)	800, 897, 1151
HpyCH4III	ACNGT	4 cut(s)	457, 647, 693, 1184
HpyCH4IV	ACGT	3 cut(s)	21, 158, 478
HpyF10VI	GCNNNNNNNGC	4 cut(s)	122, 170, 407, 1184
HpyF3I	CTNAG	5 cut(s)	57, 174, 309, 636, 877
HpySE526I	ACGT	3 cut(s)	21, 158, 478
HspAI	GCGC	4 cut(s)	244, 377, 785, 1038
Kpn2I	TCCGGA	1 cut(s)	336
Ksp22I	TGATCA	2 cut(s)	180, 603
Kzo9I	GATC	4 cut(s)	180, 312, 603, 618
LmnI	GCTCC	2 cut(s)	968, 980
Lsp1109I	GCAGC	1 cut(s)	1090
LweI	GCATC	3 cut(s)	103, 819, 841
MaeI	CTAG	1 cut(s)	290
MaeII	ACGT	3 cut(s)	21, 158, 478
MalI	GATC	4 cut(s)	182, 314, 605, 620
MboI	GATC	4 cut(s)	180, 312, 603, 618
MboII	GAAGA	2 cut(s)	847, 1076
MhlI	GDGCHC	2 cut(s)	430, 484
MluCI	AATT	7 cut(s)	349, 355, 449, 710, 858, 1045, 1069
MlyI	GAGTC	2 cut(s)	38, 538
MmeI	TCCRAC	2 cut(s)	56, 635
Mph1103I	ATGCAT	1 cut(s)	1055
MroI	TCCGGA	1 cut(s)	336
MroXI	GAANNNNTTC	1 cut(s)	1161
MseI	TTAA	4 cut(s)	549, 861, 908, 930
MslI	CAYNNNNRTG	1 cut(s)	149
MspI	CCGG	4 cut(s)	186, 276, 337, 988
MspR9I	CCNGG	1 cut(s)	277
Mva1269I	GAATGC	3 cut(s)	85, 664, 1053
MwoI	GCNNNNNNNGC	4 cut(s)	122, 170, 407, 1184
NciI	CCSGG	1 cut(s)	277
NdeII	GATC	4 cut(s)	180, 312, 603, 618
NsbI	TGCGCA	2 cut(s)	378, 786
NsiI	ATGCAT	1 cut(s)	1055
NspI	RCATGY	4 cut(s)	148, 424, 526, 583
PaqCI	CACCTGC	1 cut(s)	1183
PciI	ACATGT	3 cut(s)	144, 522, 579
PctI	GAATGC	3 cut(s)	85, 664, 1053
PdmI	GAANNNNTTC	1 cut(s)	1161
PfeI	GAWTC	2 cut(s)	327, 731
PkrI	GCNGC	3 cut(s)	118, 1105, 1202
PleI	GAGTC	2 cut(s)	37, 537
PmaCI	CACGTG	1 cut(s)	479
PmlI	CACGTG	1 cut(s)	479
PpsI	GAGTC	2 cut(s)	37, 537
Ppu21I	YACGTR	1 cut(s)	479
PscI	ACATGT	3 cut(s)	144, 522, 579
PspCI	CACGTG	1 cut(s)	479
PspFI	CCCAGC	1 cut(s)	240
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
RseI	CAYNNNNRTG	1 cut(s)	149
SaqAI	TTAA	4 cut(s)	549, 861, 908, 930
SatI	GCNGC	3 cut(s)	117, 1104, 1201
Sau3AI	GATC	4 cut(s)	180, 312, 603, 618
SchI	GAGTC	2 cut(s)	38, 538
ScrFI	CCNGG	1 cut(s)	277
SduI	GDGCHC	2 cut(s)	430, 484
SfaNI	GCATC	3 cut(s)	103, 819, 841
SmiMI	CAYNNNNRTG	1 cut(s)	149
Sse9I	AATT	7 cut(s)	349, 355, 449, 710, 858, 1045, 1069
SsiI	CCGC	5 cut(s)	15, 117, 154, 854, 1200
SspI	AATATT	1 cut(s)	1096
SspMI	CTAG	1 cut(s)	290
StyD4I	CCNGG	1 cut(s)	275
StyI	CCWWGG	1 cut(s)	430
TaaI	ACNGT	4 cut(s)	457, 647, 693, 1184
TaiI	ACGT	3 cut(s)	24, 161, 481
TaqI	TCGA	2 cut(s)	222, 359
TasI	AATT	7 cut(s)	349, 355, 449, 710, 858, 1045, 1069
TauI	GCSGC	2 cut(s)	119, 1203
TfiI	GAWTC	2 cut(s)	327, 731
Tru1I	TTAA	4 cut(s)	549, 861, 908, 930
Tru9I	TTAA	4 cut(s)	549, 861, 908, 930
TscAI	CASTG	3 cut(s)	156, 698, 1189
TseI	GCWGC	1 cut(s)	1103
TspDTI	ATGAA	6 cut(s)	462, 674, 753, 819, 959, 1038
TspRI	CASTG	3 cut(s)	156, 698, 1189
XapI	RAATTY	3 cut(s)	355, 449, 1045
XceI	RCATGY	4 cut(s)	148, 424, 526, 583
XmiI	GTMKAC	1 cut(s)	576
XmnI	GAANNNNTTC	1 cut(s)	1161
XspI	CTAG	1 cut(s)	290
Zsp2I	ATGCAT	1 cut(s)	1055

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.