Rroxscaffold_7G00191390

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0015465
Physical Location & Seq
Forward (+)
31967910 .. 31972135
4226 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00191390.1

Sequence Viewer

Length: 1599 bp
ATGAATGGATGCGATCCTCCAGGCCGAGTTGGCCAGACAGCTGGCATGGACCCTAGCAACCTCCAATGTTTATACAAGGAGGACCTCGATCGCCTCCATACTGGGGGTGTGAAGCAGGTGGCCAAAGGATATAATATGGTGATGATATGTCATGGATCGTATGACGCTGGTTACTTTTCTGAGGCTTGTGCTTCTCTTTCCTCAATAAACCATGGGAAATCGGTGCACGCAGAGTGTATCAAGGCTGGTGTGCATTGTGATGTAGTGGTTGGCACCTCATTGGTTGACATGTATGCGAAATGCGGGGACGTTTTTGAGTCCCGGAAGGTGTTTGATTATATGCCTGAGAGAAATGTGGTAAGTTGGAATGCCATGATTGGTGGGTACTGGAGAAATGGGGATGCAGCATCTGCGTTGGTTTTGTTTGAGAAGATGTCAATGCGGACGTATGTGACTTGGGCTGAGATGATCACCGGGTTTGCAAGGACTGGAGATACTGTTACTGCTAGGCGGTTTTTTGATCAGGTTCCACTGGAGTTGAAGAATGTGATTACGTGGACTGTGATGGTTGATGGGTATTGTAGCAATGGGCAGATGGAGATGGCGAGGCAAGTTTTCGAGGCAATGCCCCAGCGCAATCACTTTGTTTGGTCATCAATGATTTCTGGGTATTGCAAGTTAGGTGATGTTGAGGAGGCTAAGATCGTTTTCGATAGAATCCCAGTCCGGAACTTGGTGAATTGGAATTCGATGATATCTGGATATGCGCAAAATGGGTTTTGCGAGGAAGCTTTGAAAGCGTTTGAGAACATGCAAGCCCAAGGCTTTGAGCCAGATGAATTTACTGTTGTGAGTGTTTTATCTGCATGTGCTCAGTCTGGGCTGTTAGATGTTGGCAAGGGTATACATAACATGTTGAGTCATAAAAGGATAACGCTCAATCAGATTGTTCTCAATGCACTTGTAGACATGTATGCAAAATGTGGCGACTTGATCAATGCAAGGTTGGTCTTTGATGAGATGGCTGAGAGGAACAGTGCTTGTTGGAATGCTATGATTTCAAGCATGGCTATTCATGGACAGTGCAAGGAGGCTCTTGAATTGTTTAGCAGAATGGAGGATTCAAATGAAAAGCCTGATGAGATAACCTTTCTTTCTGTTCTGTCAGCTTGTGCGCATGGAGGTTTAGTAGATGAAGGCATGGAACTTTTCTCCAAGATGCAGAAGAAATATGGTTTGGAAGCAGGAATTAAGCATTATGGGTGCTTAGTTGACCTTTTGGGACGGGCTGGAAGGTTAAGAGAAGCTTACGCTTTAGTCAAAAGTATGCCCATGAAACCCAATGACATGGTTTGGGGGGCTATGCTTGGATCTTGCCGGATTTATATGGATATGGAAATGACAGAACAGGTAGCAAAGGATATTAGCACCCAAAATTCTAACAATCAGTCAGGCGATAATTCACATTATGTGCTTCTGTCAAATATTTATGCTGCTTCTGATAGATGGGAGAAAGCTGAAAGGACGAGAATGAACTTGGTAAACGAAGGCTTTCAAAAGACACCTGCTCACAGTGCATTTATGCCCTGCGGCGCATAG

Protein Analysis

532

Amino Acids

59.12

Weight (kDa)

5.61

Isoelectric Point (pI)

36.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 117 - 147 7.9e-06 PPR repeat family
PPR_2 PF13041 181 - 213 1.1e-07 PPR repeat family
PPR_1 PF12854 182 - 209 3.6e-06 PPR repeat
PPR PF01535 184 - 213 8.7e-08 PPR repeat
PPR PF01535 216 - 243 3e-07 PPR repeat
PPR_2 PF13041 244 - 291 4.6e-11 PPR repeat family
PPR PF01535 247 - 276 2.6e-08 PPR repeat
PPR_2 PF13041 345 - 393 2.1e-10 PPR repeat family
PPR PF01535 348 - 375 1.5e-06 PPR repeat
E_motif PF20431 464 - 524 7.5e-08 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015465)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21470
fragaria_vesca FvH4_2g14800 FvH4_7g25011
malus_domestica MD05G1012400.v1.1
prunus_persica Prupe.8G017700_v2.0.a1
pyrus_communis pycom05g00720
rosa_chinensis RchiOBHm_Chr6g0277371
rosa_laevigata RLG00000013306 RLG00000029733
rosa_multiflora Rmu_co8197674.1_g000001 Rmu_sc0000030.1_g000011
rosa_roxburghii Rroxscaffold_7G00191390
rosa_rugosa Rorug01G0093200 Rorug06G0107700
rosa_samantha Rh6AG218600 Rh6DG215300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 106, 1573
Acc16I TGCGCA 2 cut(s) 768, 1176
Acc36I ACCTGC 2 cut(s) 106, 1573
AccB1I GGYRCC 1 cut(s) 272
AccI GTMKAC 2 cut(s) 904, 966
AccIII TCCGGA 1 cut(s) 726
AciI CCGC 4 cut(s) 303, 442, 511, 1590
AclWI GGATC 3 cut(s) 8, 163, 1378
AcoI YGGCCR 2 cut(s) 31, 120
AcsI RAATTY 3 cut(s) 745, 839, 1435
AfaI GTAC 1 cut(s) 386
AfiI CCNNNNNNNGG 2 cut(s) 103, 733
AflIII ACRYGT 3 cut(s) 288, 912, 969
AgsI TTSAA 6 cut(s) 541, 796, 1062, 1100, 1125, 1556
AjnI CCWGG 1 cut(s) 19
AjuI GAANNNNNNNTTGG 2 cut(s) 1220, 1252
AluBI AGCT 5 cut(s) 41, 791, 1169, 1307, 1517
AluI AGCT 5 cut(s) 41, 791, 1169, 1307, 1517
Alw21I GWGCWC 2 cut(s) 228, 874
Alw44I GTGCAC 1 cut(s) 224
AlwI GGATC 3 cut(s) 8, 163, 1378
AlwNI CAGNNNCTG 1 cut(s) 410
Aor13HI TCCGGA 1 cut(s) 726
AoxI GGCC 3 cut(s) 22, 31, 120
ApaLI GTGCAC 1 cut(s) 224
ApeKI GCWGC 2 cut(s) 404, 1493
ApoI RAATTY 3 cut(s) 745, 839, 1435
Asp700I GAANNNNTTC 1 cut(s) 1551
AspLEI GCGC 4 cut(s) 636, 769, 1177, 1595
AspS9I GGNCC 2 cut(s) 49, 82
AsuC2I CCSGG 2 cut(s) 322, 475
AsuHPI GGTGA 4 cut(s) 151, 463, 695, 748
AvaII GGWCC 2 cut(s) 49, 82
BaeGI GKGCMC 1 cut(s) 228
BalI TGGCCA 2 cut(s) 33, 122
BanI GGYRCC 1 cut(s) 272
Bbv12I GWGCWC 2 cut(s) 228, 874
BbvI GCAGC 2 cut(s) 416, 1480
BccI CCATC 6 cut(s) 559, 566, 589, 595, 1015, 1500
BciT130I CCWGG 1 cut(s) 21
BclI TGATCA 3 cut(s) 468, 520, 993
BcnI CCSGG 2 cut(s) 322, 475
BfaI CTAG 2 cut(s) 54, 507
BfuAI ACCTGC 2 cut(s) 106, 1573
BglI GCCNNNNNGGC 1 cut(s) 30
BisI GCNGC 3 cut(s) 405, 1494, 1591
BlsI GCNGC 3 cut(s) 406, 1495, 1592
Bme1390I CCNGG 3 cut(s) 21, 322, 475
Bme18I GGWCC 2 cut(s) 49, 82
BmgT120I GGNCC 2 cut(s) 49, 82
BmiI GGNNCC 3 cut(s) 51, 274, 528
BmrFI CCNGG 3 cut(s) 21, 322, 475
BmrI ACTGGG 2 cut(s) 111, 716
BmsI GCATC 3 cut(s) 391, 416, 1209
BmuI ACTGGG 2 cut(s) 111, 716
BpmI CTGGAG 3 cut(s) 409, 510, 554
BpuMI CCSGG 2 cut(s) 322, 475
BsaAI YACGTR 1 cut(s) 555
BsaJI CCNNGG 2 cut(s) 211, 820
BsaWI WCCGGW 1 cut(s) 726
BsaXI ACNNNNNCTCC 4 cut(s) 483, 513, 1173, 1203
Bsc4I CCNNNNNNNGG 2 cut(s) 103, 733
Bse1I ACTGG 5 cut(s) 106, 392, 493, 537, 722
Bse3DI GCAATG 2 cut(s) 592, 630
BseAI TCCGGA 1 cut(s) 726
BseBI CCWGG 1 cut(s) 21
BseDI CCNNGG 2 cut(s) 211, 820
BseGI GGATG 2 cut(s) 14, 406
BseLI CCNNNNNNNGG 2 cut(s) 103, 733
BseMI GCAATG 2 cut(s) 592, 630
BseMII CTCAG 5 cut(s) 171, 336, 453, 887, 1017
BseNI ACTGG 5 cut(s) 106, 392, 493, 537, 722
BseRI GAGGAG 1 cut(s) 707
BseSI GKGCMC 1 cut(s) 228
BseXI GCAGC 2 cut(s) 416, 1480
BseYI CCCAGC 1 cut(s) 630
Bsh1285I CGRYCG 1 cut(s) 91
BshFI GGCC 3 cut(s) 24, 33, 122
BshNI GGYRCC 1 cut(s) 272
BsiEI CGRYCG 1 cut(s) 91
BsiHKAI GWGCWC 2 cut(s) 228, 874
BsiSI CCGG 4 cut(s) 322, 474, 727, 1378
BslFI GGGAC 3 cut(s) 304, 320, 1296
BslI CCNNNNNNNGG 2 cut(s) 103, 733
BsmFI GGGAC 3 cut(s) 304, 320, 1296
BsmI GAATGC 2 cut(s) 373, 1054
BsnI GGCC 3 cut(s) 24, 33, 122
Bsp1286I GDGCHC 2 cut(s) 228, 874
Bsp13I TCCGGA 1 cut(s) 726
Bsp143I GATC 8 cut(s) 13, 88, 155, 468, 520, 702, 993, 1370
Bsp19I CCATGG 1 cut(s) 211
BspACI CCGC 4 cut(s) 303, 442, 511, 1590
BspANI GGCC 3 cut(s) 24, 33, 122
BspCNI CTCAG 5 cut(s) 172, 337, 454, 886, 1018
BspEI TCCGGA 1 cut(s) 726
BspLI GGNNCC 3 cut(s) 51, 274, 528
BspMI ACCTGC 2 cut(s) 106, 1573
BspPI GGATC 3 cut(s) 8, 163, 1378
BspT107I GGYRCC 1 cut(s) 272
BsrDI GCAATG 2 cut(s) 592, 630
BsrI ACTGG 5 cut(s) 106, 392, 493, 537, 722
BssECI CCNNGG 2 cut(s) 211, 820
BssMI GATC 8 cut(s) 13, 88, 155, 468, 520, 702, 993, 1370
BssNAI GTATAC 1 cut(s) 905
BssT1I CCWWGG 2 cut(s) 211, 820
Bst1107I GTATAC 1 cut(s) 905
Bst2UI CCWGG 1 cut(s) 21
Bst4CI ACNGT 6 cut(s) 499, 562, 847, 1037, 1083, 1574
BstAPI GCANNNNNTGC 1 cut(s) 410
BstBAI YACGTR 1 cut(s) 555
BstC8I GCNNGC 3 cut(s) 43, 228, 816
BstDEI CTNAG 7 cut(s) 180, 345, 462, 699, 873, 1026, 1267
BstDSI CCRYGG 1 cut(s) 211
BstF5I GGATG 2 cut(s) 14, 406
BstHHI GCGC 4 cut(s) 636, 769, 1177, 1595
BstKTI GATC 8 cut(s) 16, 91, 158, 471, 523, 705, 996, 1373
BstMBI GATC 8 cut(s) 13, 88, 155, 468, 520, 702, 993, 1370
BstMCI CGRYCG 1 cut(s) 91
BstMWI GCNNNNNNNGC 4 cut(s) 30, 410, 797, 1574
BstNI CCWGG 1 cut(s) 21
BstNSI RCATGY 5 cut(s) 292, 814, 870, 916, 973
BstSCI CCNGG 3 cut(s) 19, 320, 473
BstSLI GKGCMC 1 cut(s) 228
BstV1I GCAGC 2 cut(s) 416, 1480
BstX2I RGATCY 1 cut(s) 1370
BstXI CCANNNNNNTGG 2 cut(s) 41, 1348
BstYI RGATCY 1 cut(s) 1370
BstZ17I GTATAC 1 cut(s) 905
BsuRI GGCC 3 cut(s) 24, 33, 122
BtgI CCRYGG 1 cut(s) 211
BtsCI GGATG 2 cut(s) 14, 406
BtsIMutI CAGTG 4 cut(s) 530, 1042, 1088, 1579
BveI ACCTGC 2 cut(s) 106, 1573
Cac8I GCNNGC 3 cut(s) 43, 228, 816
CaiI CAGNNNCTG 1 cut(s) 410
CfoI GCGC 4 cut(s) 636, 769, 1177, 1595
Cfr13I GGNCC 2 cut(s) 49, 82
CseI GACGC 1 cut(s) 173
Csp6I GTAC 1 cut(s) 385
CspCI CAANNNNNGTGG 2 cut(s) 519, 554
CviQI GTAC 1 cut(s) 385
DdeI CTNAG 7 cut(s) 180, 345, 462, 699, 873, 1026, 1267
DpnI GATC 8 cut(s) 15, 90, 157, 470, 522, 704, 995, 1372
DpnII GATC 8 cut(s) 13, 88, 155, 468, 520, 702, 993, 1370
EaeI YGGCCR 2 cut(s) 31, 120
Eco130I CCWWGG 2 cut(s) 211, 820
Eco32I GATATC 1 cut(s) 756
Eco47I GGWCC 2 cut(s) 49, 82
EcoO109I RGGNCCY 1 cut(s) 82
EcoRI GAATTC 1 cut(s) 745
EcoRII CCWGG 1 cut(s) 19
EcoRV GATATC 1 cut(s) 756
EcoT14I CCWWGG 2 cut(s) 211, 820
ErhI CCWWGG 2 cut(s) 211, 820
FalI AAGNNNNNCTT 2 cut(s) 1291, 1323
FaqI GGGAC 3 cut(s) 304, 320, 1296
FauI CCCGC 1 cut(s) 296
FbaI TGATCA 3 cut(s) 468, 520, 993
FblI GTMKAC 2 cut(s) 904, 966
Fnu4HI GCNGC 3 cut(s) 405, 1494, 1591
FokI GGATG 2 cut(s) 21, 413
Fsp4HI GCNGC 3 cut(s) 405, 1494, 1591
FspAI RTGCGCAY 1 cut(s) 1176
FspBI CTAG 2 cut(s) 54, 507
FspI TGCGCA 2 cut(s) 768, 1176
GlaI GCGC 4 cut(s) 635, 768, 1176, 1594
GluI GCNGC 3 cut(s) 405, 1494, 1591
GsaI CCCAGC 1 cut(s) 634
GsuI CTGGAG 3 cut(s) 409, 510, 554
HaeIII GGCC 3 cut(s) 24, 33, 122
HapII CCGG 4 cut(s) 322, 474, 727, 1378
HgaI GACGC 1 cut(s) 173
HhaI GCGC 4 cut(s) 636, 769, 1177, 1595
Hin6I GCGC 4 cut(s) 634, 767, 1175, 1593
HinP1I GCGC 4 cut(s) 634, 767, 1175, 1593
HincII GTYRAC 2 cut(s) 286, 1273
HindII GTYRAC 2 cut(s) 286, 1273
HindIII AAGCTT 2 cut(s) 789, 1305
HinfI GANTC 4 cut(s) 317, 717, 919, 1121
HpaII CCGG 4 cut(s) 322, 474, 727, 1378
HphI GGTGA 4 cut(s) 151, 463, 695, 748
Hpy166II GTNNAC 7 cut(s) 226, 286, 558, 905, 967, 1273, 1543
Hpy188I TCNGA 3 cut(s) 181, 945, 1501
Hpy188III TCNNGA 3 cut(s) 727, 759, 1097
Hpy8I GTNNAC 7 cut(s) 226, 286, 558, 905, 967, 1273, 1543
HpyAV CCTTC 4 cut(s) 319, 1190, 1287, 1541
HpyCH4III ACNGT 6 cut(s) 499, 562, 847, 1037, 1083, 1574
HpyCH4IV ACGT 3 cut(s) 309, 446, 554
HpyF10VI GCNNNNNNNGC 4 cut(s) 30, 410, 797, 1574
HpyF3I CTNAG 7 cut(s) 180, 345, 462, 699, 873, 1026, 1267
HpySE526I ACGT 3 cut(s) 309, 446, 554
HspAI GCGC 4 cut(s) 634, 767, 1175, 1593
Kpn2I TCCGGA 1 cut(s) 726
Ksp22I TGATCA 3 cut(s) 468, 520, 993
Kzo9I GATC 8 cut(s) 13, 88, 155, 468, 520, 702, 993, 1370
Lsp1109I GCAGC 2 cut(s) 416, 1480
LweI GCATC 3 cut(s) 391, 416, 1209
MaeI CTAG 2 cut(s) 54, 507
MaeII ACGT 3 cut(s) 309, 446, 554
MaeIII GTNAC 3 cut(s) 170, 451, 499
MalI GATC 8 cut(s) 15, 90, 157, 470, 522, 704, 995, 1372
MboI GATC 8 cut(s) 13, 88, 155, 468, 520, 702, 993, 1370
MboII GAAGA 3 cut(s) 442, 553, 1237
MflI RGATCY 1 cut(s) 1370
MhlI GDGCHC 2 cut(s) 228, 874
MlsI TGGCCA 2 cut(s) 33, 122
MluCI AATT 7 cut(s) 739, 745, 839, 1100, 1248, 1435, 1459
MluNI TGGCCA 2 cut(s) 33, 122
MlyI GAGTC 2 cut(s) 326, 928
MmeI TCCRAC 2 cut(s) 344, 1025
Mox20I TGGCCA 2 cut(s) 33, 122
MroI TCCGGA 1 cut(s) 726
MroXI GAANNNNTTC 1 cut(s) 1551
MscI TGGCCA 2 cut(s) 33, 122
MseI TTAA 2 cut(s) 1251, 1298
MslI CAYNNNNRTG 1 cut(s) 258
Msp20I TGGCCA 2 cut(s) 33, 122
MspA1I CMGCKG 1 cut(s) 41
MspI CCGG 4 cut(s) 322, 474, 727, 1378
MspR9I CCNGG 3 cut(s) 21, 322, 475
Mva1269I GAATGC 2 cut(s) 373, 1054
MvaI CCWGG 1 cut(s) 21
MwoI GCNNNNNNNGC 4 cut(s) 30, 410, 797, 1574
NciI CCSGG 2 cut(s) 322, 475
NcoI CCATGG 1 cut(s) 211
NdeII GATC 8 cut(s) 13, 88, 155, 468, 520, 702, 993, 1370
NlaIV GGNNCC 3 cut(s) 51, 274, 528
NmeAIII GCCGAG 1 cut(s) 50
NmuCI GTSAC 1 cut(s) 451
NsbI TGCGCA 2 cut(s) 768, 1176
NspI RCATGY 5 cut(s) 292, 814, 870, 916, 973
PaqCI CACCTGC 2 cut(s) 106, 1573
PciI ACATGT 3 cut(s) 288, 912, 969
PctI GAATGC 2 cut(s) 373, 1054
PdmI GAANNNNTTC 1 cut(s) 1551
PfeI GAWTC 2 cut(s) 717, 1121
PfoI TCCNGGA 1 cut(s) 320
PkrI GCNGC 3 cut(s) 406, 1495, 1592
Ple19I CGATCG 1 cut(s) 91
PleI GAGTC 2 cut(s) 325, 927
PpsI GAGTC 2 cut(s) 325, 927
Ppu21I YACGTR 1 cut(s) 555
PpuMI RGGWCCY 1 cut(s) 82
PscI ACATGT 3 cut(s) 288, 912, 969
Psp5II RGGWCCY 1 cut(s) 82
Psp6I CCWGG 1 cut(s) 19
PspFI CCCAGC 1 cut(s) 630
PspGI CCWGG 1 cut(s) 19
PspN4I GGNNCC 3 cut(s) 51, 274, 528
PspPI GGNCC 2 cut(s) 49, 82
PspPPI RGGWCCY 1 cut(s) 82
PstNI CAGNNNCTG 1 cut(s) 410
PsuI RGATCY 1 cut(s) 1370
PvuI CGATCG 1 cut(s) 91
PvuII CAGCTG 1 cut(s) 41
RsaI GTAC 1 cut(s) 386
RsaNI GTAC 1 cut(s) 385
RseI CAYNNNNRTG 1 cut(s) 258
SaqAI TTAA 2 cut(s) 1251, 1298
SatI GCNGC 3 cut(s) 405, 1494, 1591
Sau3AI GATC 8 cut(s) 13, 88, 155, 468, 520, 702, 993, 1370
Sau96I GGNCC 2 cut(s) 49, 82
SchI GAGTC 2 cut(s) 326, 928
ScrFI CCNGG 3 cut(s) 21, 322, 475
SduI GDGCHC 2 cut(s) 228, 874
SfaNI GCATC 3 cut(s) 391, 416, 1209
SfiI GGCCNNNNNGGCC 1 cut(s) 30
SinI GGWCC 2 cut(s) 49, 82
SmiMI CAYNNNNRTG 1 cut(s) 258
Sse9I AATT 7 cut(s) 739, 745, 839, 1100, 1248, 1435, 1459
SsiI CCGC 4 cut(s) 303, 442, 511, 1590
SspI AATATT 1 cut(s) 1486
SspMI CTAG 2 cut(s) 54, 507
StyD4I CCNGG 3 cut(s) 19, 320, 473
StyI CCWWGG 2 cut(s) 211, 820
TaaI ACNGT 6 cut(s) 499, 562, 847, 1037, 1083, 1574
TaiI ACGT 3 cut(s) 312, 449, 557
TaqI TCGA 4 cut(s) 87, 618, 711, 749
TasI AATT 7 cut(s) 739, 745, 839, 1100, 1248, 1435, 1459
TauI GCSGC 1 cut(s) 1593
TfiI GAWTC 2 cut(s) 717, 1121
Tru1I TTAA 2 cut(s) 1251, 1298
Tru9I TTAA 2 cut(s) 1251, 1298
TscAI CASTG 4 cut(s) 537, 1042, 1088, 1579
TseFI GTSAC 1 cut(s) 451
TseI GCWGC 2 cut(s) 404, 1493
Tsp45I GTSAC 1 cut(s) 451
TspDTI ATGAA 7 cut(s) 17, 852, 1064, 1143, 1209, 1349, 1547
TspRI CASTG 4 cut(s) 537, 1042, 1088, 1579
VneI GTGCAC 1 cut(s) 224
VpaK11BI GGWCC 2 cut(s) 49, 82
XapI RAATTY 3 cut(s) 745, 839, 1435
XceI RCATGY 5 cut(s) 292, 814, 870, 916, 973
XmiI GTMKAC 2 cut(s) 904, 966
XmnI GAANNNNTTC 1 cut(s) 1551
XspI CTAG 2 cut(s) 54, 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.