Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0015465

Physical Location & Seq

Genomic Coordinates Reverse (-)

39382601 .. 39385348

Gene Structure 2748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG218600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1395 bp

ATGAACCATGGGAAATCGGTGCACGCAGAGTGTGTCAAGGCTGGCGTGCATGGTGATGTAGTGGTTGGCACCTCATTGGTTGACATGTATGCGAAATGCGGGGACGTTTTTGAGTCCCGGAAAGTGTTTGATTATATGCCTCAGAGAAATGCGGTAAGTTGGAATGCCATGATTGGTGGGTACTGGAGAAATGGGGATGCAGCATCTGCGTTGGTTTTGTTTGAGAAGATGTCAATGCGGACGTATGTGACTTGGGCTGAGATGATCACCGGGTTTGCAAGGACTGGAGATACTGTTACTGCTAGGCGGTTTTTTGATCAGGTTCCACCGGAGTTGAAGAATGTGATTACGTGGACTGTGATGGTTGATGGGTATTGTAGCAATGGGCAGATGGGGATGGCGAGGCAAGTTTTCGAGGCAATGCCCCGGCGCAATCACTTTGTTTGGTCATCAATGATTTCTGGGTATTGCAAGTTAGGTGATGTTGAGGCGGCTAAGATCGTTTTCGATAGAATCCCAGTCCGGAACTTGGTGAATTGGAATTCGATGATATCTGGATATGCGCAAAATGGGTTTTGCGGGGAAGCTTTGAAAGCGTTTGAGAACATGCAAGCCCAAGGCTTTGAGCCAGATGAGTTCACTGTTGTGAGTGTGTTATCTGCATGTGCTCAGTCTGGGCTGTTAGATGTTGGCAAGGATATACATAACATGTTGAGTCGTAAAAGGATAAAGCTCAATCAGATTGTTCTCAATGCACTTGTGGACATGTATGCAAAATGTGGCGACTTGATCAATGCAAGGTTGATCTTTGATGAGATGGCTGAGAGGAACAGTGCTTGCTGGAATGCTATGATTTCAAGCATGGCTATTCATGGACGGTGCAAGGAGGCTCTTGAATTGTTTAGCAGAATGGAGGATTCAAATGAAAAGCCTGATGAGATAACCTTTCTTTCTGTTCTGTCAGCTTGTGCGCATGGAGGTTTAGTAGATGAAGGCATGGAACTTTTCTCCAAGATGCAGAAGAAATATGGTTTGGAAGCAGGAATTAAGCATTATGGGTGCTTAGTTGACCTTTTGGGACGGGCTGGAAGGTTAAAAGAGGCTTACGCTTTAGTCAGAAGTATGCCCATGAAACCCAATGACATGGTTTGGGGGGCTATGCTTGGAGCTTGCCGGATTTATATGGATATGGAAATGACAGAACAGGTAGCAAAGGATATTAGCACCCAAAATTCAAACAATCAGTCGGGCGATAATTCACATCATGTGCTTCTGTCAAATATTTATGCTGCTTCTGAAAGATGGGAGAAAGCTGAAAGGATGAGAATGGACTTGGTAAACGAAGGCTTTCAAAAGACACCTGCTCACAGTGCATTTATGCCCTGCGGCGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

464

Amino Acids

51.78

Weight (kDa)

6.29

Isoelectric Point (pI)

35.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	52 - 78	9.4e-06	PPR repeat
PPR_2	PF13041	113 - 145	4.5e-07	PPR repeat family
PPR	PF01535	116 - 145	4.2e-07	PPR repeat
PPR	PF01535	148 - 175	3.3e-06	PPR repeat
PPR_2	PF13041	176 - 223	2.9e-10	PPR repeat family
PPR	PF01535	179 - 208	2.4e-07	PPR repeat
TPR_24	PF23276	214 - 277	4.9e-06	Fungal tetratrico peptide repeats
PPR_2	PF13041	277 - 325	2.2e-10	PPR repeat family
PPR	PF01535	280 - 307	1e-06	PPR repeat
E_motif	PF20431	396 - 456	3.3e-07	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015465)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21470
fragaria_vesca	FvH4_2g14800 FvH4_7g25011
malus_domestica	MD05G1012400.v1.1
prunus_persica	Prupe.8G017700_v2.0.a1
pyrus_communis	pycom05g00720
rosa_chinensis	RchiOBHm_Chr6g0277371
rosa_laevigata	RLG00000013306 RLG00000029733
rosa_multiflora	Rmu_co8197674.1_g000001 Rmu_sc0000030.1_g000011
rosa_roxburghii	Rroxscaffold_7G00191390
rosa_rugosa	Rorug01G0093200 Rorug06G0107700
rosa_samantha	Rh6AG218600 Rh6DG215300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1369
Acc16I	TGCGCA	2 cut(s)	564, 972
Acc36I	ACCTGC	1 cut(s)	1369
AccB1I	GGYRCC	1 cut(s)	68
AccIII	TCCGGA	1 cut(s)	522
AciI	CCGC	7 cut(s)	99, 152, 238, 307, 491, 579, 1386
AcsI	RAATTY	2 cut(s)	541, 1231
AfaI	GTAC	1 cut(s)	182
AfiI	CCNNNNNNNGG	1 cut(s)	529
AflIII	ACRYGT	3 cut(s)	84, 708, 765
AgsI	TTSAA	7 cut(s)	337, 592, 858, 896, 921, 1236, 1352
AjuI	GAANNNNNNNTTGG	2 cut(s)	1016, 1048
AleI	CACNNNNGTG	1 cut(s)	644
AluBI	AGCT	5 cut(s)	587, 733, 965, 1169, 1313
AluI	AGCT	5 cut(s)	587, 733, 965, 1169, 1313
Alw21I	GWGCWC	2 cut(s)	24, 670
Alw44I	GTGCAC	1 cut(s)	20
AlwNI	CAGNNNCTG	1 cut(s)	206
Aor13HI	TCCGGA	1 cut(s)	522
ApaLI	GTGCAC	1 cut(s)	20
ApeKI	GCWGC	2 cut(s)	200, 1289
ApoI	RAATTY	2 cut(s)	541, 1231
ArsI	GACNNNNNNTTYG	2 cut(s)	1229, 1261
Asp700I	GAANNNNTTC	1 cut(s)	1347
AspLEI	GCGC	4 cut(s)	432, 565, 973, 1391
AsuC2I	CCSGG	3 cut(s)	118, 271, 427
AsuHPI	GGTGA	4 cut(s)	65, 259, 491, 544
BaeGI	GKGCMC	1 cut(s)	24
BanI	GGYRCC	1 cut(s)	68
Bbv12I	GWGCWC	2 cut(s)	24, 670
BbvI	GCAGC	2 cut(s)	212, 1276
BccI	CCATC	6 cut(s)	355, 362, 385, 391, 811, 1296
BclI	TGATCA	3 cut(s)	264, 316, 789
BcnI	CCSGG	3 cut(s)	118, 271, 427
BfaI	CTAG	1 cut(s)	303
BfuAI	ACCTGC	1 cut(s)	1369
BisI	GCNGC	4 cut(s)	201, 492, 1290, 1387
BlsI	GCNGC	4 cut(s)	202, 493, 1291, 1388
Bme1390I	CCNGG	3 cut(s)	118, 271, 427
BmiI	GGNNCC	2 cut(s)	70, 324
BmrFI	CCNGG	3 cut(s)	118, 271, 427
BmrI	ACTGGG	1 cut(s)	512
BmsI	GCATC	3 cut(s)	187, 212, 1005
BmuI	ACTGGG	1 cut(s)	512
BpmI	CTGGAG	2 cut(s)	205, 306
BpuMI	CCSGG	3 cut(s)	118, 271, 427
BsaAI	YACGTR	1 cut(s)	351
BsaJI	CCNNGG	3 cut(s)	7, 425, 616
BsaWI	WCCGGW	2 cut(s)	328, 522
BsaXI	ACNNNNNCTCC	4 cut(s)	279, 309, 969, 999
Bsc4I	CCNNNNNNNGG	1 cut(s)	529
Bse1I	ACTGG	3 cut(s)	188, 289, 518
Bse3DI	GCAATG	2 cut(s)	388, 426
BseAI	TCCGGA	1 cut(s)	522
BseDI	CCNNGG	3 cut(s)	7, 425, 616
BseGI	GGATG	3 cut(s)	202, 402, 1326
BseLI	CCNNNNNNNGG	1 cut(s)	529
BseMI	GCAATG	2 cut(s)	388, 426
BseMII	CTCAG	4 cut(s)	155, 249, 683, 813
BseNI	ACTGG	3 cut(s)	188, 289, 518
BseSI	GKGCMC	1 cut(s)	24
BseXI	GCAGC	2 cut(s)	212, 1276
BshNI	GGYRCC	1 cut(s)	68
BsiHKAI	GWGCWC	2 cut(s)	24, 670
BsiSI	CCGG	6 cut(s)	118, 270, 329, 427, 523, 1174
BslFI	GGGAC	3 cut(s)	100, 116, 1092
BslI	CCNNNNNNNGG	1 cut(s)	529
BsmFI	GGGAC	3 cut(s)	100, 116, 1092
BsmI	GAATGC	2 cut(s)	169, 850
Bsp1286I	GDGCHC	2 cut(s)	24, 670
Bsp13I	TCCGGA	1 cut(s)	522
Bsp143I	GATC	5 cut(s)	264, 316, 498, 789, 804
Bsp19I	CCATGG	1 cut(s)	7
BspACI	CCGC	7 cut(s)	99, 152, 238, 307, 491, 579, 1386
BspCNI	CTCAG	4 cut(s)	154, 250, 682, 814
BspEI	TCCGGA	1 cut(s)	522
BspLI	GGNNCC	2 cut(s)	70, 324
BspMI	ACCTGC	1 cut(s)	1369
BspT107I	GGYRCC	1 cut(s)	68
BsrDI	GCAATG	2 cut(s)	388, 426
BsrI	ACTGG	3 cut(s)	188, 289, 518
BssECI	CCNNGG	3 cut(s)	7, 425, 616
BssMI	GATC	5 cut(s)	264, 316, 498, 789, 804
BssT1I	CCWWGG	2 cut(s)	7, 616
Bst4CI	ACNGT	6 cut(s)	295, 358, 643, 833, 879, 1370
BstAPI	GCANNNNNTGC	1 cut(s)	206
BstBAI	YACGTR	1 cut(s)	351
BstC8I	GCNNGC	6 cut(s)	24, 43, 47, 612, 838, 1171
BstDEI	CTNAG	6 cut(s)	141, 258, 495, 669, 822, 1063
BstDSI	CCRYGG	1 cut(s)	7
BstF5I	GGATG	3 cut(s)	202, 402, 1326
BstHHI	GCGC	4 cut(s)	432, 565, 973, 1391
BstKTI	GATC	5 cut(s)	267, 319, 501, 792, 807
BstMBI	GATC	5 cut(s)	264, 316, 498, 789, 804
BstMWI	GCNNNNNNNGC	3 cut(s)	206, 593, 1370
BstNSI	RCATGY	5 cut(s)	88, 610, 666, 712, 769
BstSCI	CCNGG	3 cut(s)	116, 269, 425
BstSLI	GKGCMC	1 cut(s)	24
BstV1I	GCAGC	2 cut(s)	212, 1276
BstXI	CCANNNNNNTGG	1 cut(s)	1144
BtgI	CCRYGG	1 cut(s)	7
BtsCI	GGATG	3 cut(s)	202, 402, 1326
BtsIMutI	CAGTG	3 cut(s)	639, 838, 1375
BveI	ACCTGC	1 cut(s)	1369
Cac8I	GCNNGC	6 cut(s)	24, 43, 47, 612, 838, 1171
CaiI	CAGNNNCTG	1 cut(s)	206
CfoI	GCGC	4 cut(s)	432, 565, 973, 1391
Csp6I	GTAC	1 cut(s)	181
CspCI	CAANNNNNGTGG	2 cut(s)	315, 350
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	6 cut(s)	141, 258, 495, 669, 822, 1063
DpnI	GATC	5 cut(s)	266, 318, 500, 791, 806
DpnII	GATC	5 cut(s)	264, 316, 498, 789, 804
Eco130I	CCWWGG	2 cut(s)	7, 616
Eco32I	GATATC	1 cut(s)	552
EcoRI	GAATTC	1 cut(s)	541
EcoRV	GATATC	1 cut(s)	552
EcoT14I	CCWWGG	2 cut(s)	7, 616
ErhI	CCWWGG	2 cut(s)	7, 616
FaqI	GGGAC	3 cut(s)	100, 116, 1092
FauI	CCCGC	2 cut(s)	92, 572
FbaI	TGATCA	3 cut(s)	264, 316, 789
Fnu4HI	GCNGC	4 cut(s)	201, 492, 1290, 1387
FokI	GGATG	3 cut(s)	209, 409, 1333
Fsp4HI	GCNGC	4 cut(s)	201, 492, 1290, 1387
FspAI	RTGCGCAY	1 cut(s)	972
FspBI	CTAG	1 cut(s)	303
FspI	TGCGCA	2 cut(s)	564, 972
GlaI	GCGC	4 cut(s)	431, 564, 972, 1390
GluI	GCNGC	4 cut(s)	201, 492, 1290, 1387
GsuI	CTGGAG	2 cut(s)	205, 306
HapII	CCGG	6 cut(s)	118, 270, 329, 427, 523, 1174
HhaI	GCGC	4 cut(s)	432, 565, 973, 1391
Hin6I	GCGC	4 cut(s)	430, 563, 971, 1389
HinP1I	GCGC	4 cut(s)	430, 563, 971, 1389
HincII	GTYRAC	2 cut(s)	82, 1069
HindII	GTYRAC	2 cut(s)	82, 1069
HindIII	AAGCTT	1 cut(s)	585
HinfI	GANTC	4 cut(s)	113, 513, 715, 917
HpaII	CCGG	6 cut(s)	118, 270, 329, 427, 523, 1174
HphI	GGTGA	4 cut(s)	65, 259, 491, 544
Hpy166II	GTNNAC	7 cut(s)	22, 82, 354, 639, 763, 1069, 1339
Hpy188I	TCNGA	4 cut(s)	144, 741, 1118, 1297
Hpy188III	TCNNGA	3 cut(s)	523, 555, 893
Hpy8I	GTNNAC	7 cut(s)	22, 82, 354, 639, 763, 1069, 1339
HpyAV	CCTTC	3 cut(s)	986, 1083, 1337
HpyCH4III	ACNGT	6 cut(s)	295, 358, 643, 833, 879, 1370
HpyCH4IV	ACGT	3 cut(s)	105, 242, 350
HpyF10VI	GCNNNNNNNGC	3 cut(s)	206, 593, 1370
HpyF3I	CTNAG	6 cut(s)	141, 258, 495, 669, 822, 1063
HpySE526I	ACGT	3 cut(s)	105, 242, 350
HspAI	GCGC	4 cut(s)	430, 563, 971, 1389
Kpn2I	TCCGGA	1 cut(s)	522
Ksp22I	TGATCA	3 cut(s)	264, 316, 789
Kzo9I	GATC	5 cut(s)	264, 316, 498, 789, 804
LmnI	GCTCC	1 cut(s)	1166
Lsp1109I	GCAGC	2 cut(s)	212, 1276
LweI	GCATC	3 cut(s)	187, 212, 1005
MaeI	CTAG	1 cut(s)	303
MaeII	ACGT	3 cut(s)	105, 242, 350
MaeIII	GTNAC	2 cut(s)	247, 295
MalI	GATC	5 cut(s)	266, 318, 500, 791, 806
MboI	GATC	5 cut(s)	264, 316, 498, 789, 804
MboII	GAAGA	3 cut(s)	238, 349, 1033
MhlI	GDGCHC	2 cut(s)	24, 670
MluCI	AATT	6 cut(s)	535, 541, 896, 1044, 1231, 1255
MlyI	GAGTC	2 cut(s)	122, 724
MmeI	TCCRAC	1 cut(s)	140
MroI	TCCGGA	1 cut(s)	522
MroXI	GAANNNNTTC	1 cut(s)	1347
MseI	TTAA	2 cut(s)	1047, 1094
MslI	CAYNNNNRTG	2 cut(s)	54, 644
MspI	CCGG	6 cut(s)	118, 270, 329, 427, 523, 1174
MspR9I	CCNGG	3 cut(s)	118, 271, 427
Mva1269I	GAATGC	2 cut(s)	169, 850
MwoI	GCNNNNNNNGC	3 cut(s)	206, 593, 1370
NciI	CCSGG	3 cut(s)	118, 271, 427
NcoI	CCATGG	1 cut(s)	7
NdeII	GATC	5 cut(s)	264, 316, 498, 789, 804
NlaIV	GGNNCC	2 cut(s)	70, 324
NmuCI	GTSAC	1 cut(s)	247
NsbI	TGCGCA	2 cut(s)	564, 972
NspI	RCATGY	5 cut(s)	88, 610, 666, 712, 769
OliI	CACNNNNGTG	1 cut(s)	644
PaqCI	CACCTGC	1 cut(s)	1369
PciI	ACATGT	3 cut(s)	84, 708, 765
PctI	GAATGC	2 cut(s)	169, 850
PdmI	GAANNNNTTC	1 cut(s)	1347
PfeI	GAWTC	2 cut(s)	513, 917
PfoI	TCCNGGA	1 cut(s)	116
PkrI	GCNGC	4 cut(s)	202, 493, 1291, 1388
PleI	GAGTC	2 cut(s)	121, 723
PpsI	GAGTC	2 cut(s)	121, 723
Ppu21I	YACGTR	1 cut(s)	351
PscI	ACATGT	3 cut(s)	84, 708, 765
PspN4I	GGNNCC	2 cut(s)	70, 324
PstNI	CAGNNNCTG	1 cut(s)	206
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
RseI	CAYNNNNRTG	2 cut(s)	54, 644
SaqAI	TTAA	2 cut(s)	1047, 1094
SatI	GCNGC	4 cut(s)	201, 492, 1290, 1387
Sau3AI	GATC	5 cut(s)	264, 316, 498, 789, 804
SchI	GAGTC	2 cut(s)	122, 724
ScrFI	CCNGG	3 cut(s)	118, 271, 427
SduI	GDGCHC	2 cut(s)	24, 670
SfaNI	GCATC	3 cut(s)	187, 212, 1005
SmiMI	CAYNNNNRTG	2 cut(s)	54, 644
Sse9I	AATT	6 cut(s)	535, 541, 896, 1044, 1231, 1255
SsiI	CCGC	7 cut(s)	99, 152, 238, 307, 491, 579, 1386
SspI	AATATT	1 cut(s)	1282
SspMI	CTAG	1 cut(s)	303
StyD4I	CCNGG	3 cut(s)	116, 269, 425
StyI	CCWWGG	2 cut(s)	7, 616
TaaI	ACNGT	6 cut(s)	295, 358, 643, 833, 879, 1370
TaiI	ACGT	3 cut(s)	108, 245, 353
TaqI	TCGA	3 cut(s)	414, 507, 545
TasI	AATT	6 cut(s)	535, 541, 896, 1044, 1231, 1255
TauI	GCSGC	2 cut(s)	494, 1389
TfiI	GAWTC	2 cut(s)	513, 917
Tru1I	TTAA	2 cut(s)	1047, 1094
Tru9I	TTAA	2 cut(s)	1047, 1094
TscAI	CASTG	3 cut(s)	646, 838, 1375
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	2 cut(s)	200, 1289
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	5 cut(s)	17, 860, 939, 1005, 1145
TspRI	CASTG	3 cut(s)	646, 838, 1375
VneI	GTGCAC	1 cut(s)	20
XapI	RAATTY	2 cut(s)	541, 1231
XceI	RCATGY	5 cut(s)	88, 610, 666, 712, 769
XmnI	GAANNNNTTC	1 cut(s)	1347
XspI	CTAG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.