MD05G1012400.v1.1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
2487156 .. 2488820
1665 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1012400.v1.1.491

Sequence Viewer

Length: 1665 bp
ATGTCACAAATCCCACATGGAAATCCCCACTGCCCTCTTCAAAACAACCAAAACCAAATCCCCTCAAATCCAAAGTTCCTCAAACAAATCCATGATTTCTGCACAACAACGGAAAAACCAAATCCTGCAAATTGGTCTTACATTATAAGGAATCACCTCTCTCAAGGATCACCCGCAAAAGCGCTTCTTGTGTACACCCGAATTCGGCGTCAAGGAATCTACATTTTAGGCCTTCTTCCTTTGATTCTCAAGGCCTGTGCTTCTCTTTCGTGCGTAAATCGTGGGAAGGCATTGCACGCCGAGTCTATCAAGTCTGGTATGAATTCTGATGTCTTGGTTGGCACGTCATTGGTTGACATGTATGCGAAATGCGGGCAAGTTTTTGAGTCCCGGAAAGTGTTTGATTATATGCCTGAGAGAAATCTGGTCACATGGAATGCGATGATAGGTGGGTACTTGAGAAGTGGGGATAAAATATCTGCATTGTTTTTGTTTGAGAAGATGTCTATGCGGACATCTGTGACTTGGGTTGAGATGATCGACGGGTTTGCGAGGAGTGGAGACACTGTTAGTGCTAGGCGGTTCTTTGATCAGGTTCCGCAGGAGTTGAAGAATGTTGTTGTGTGGACTGTAATGGTTGATGGGTATTCTAGCAATGGGCAGATGGAGGCGGCAAGGGAAGTTTTTGGGGCAATGCCGCAGCGTAATTTCTTTGTGTGGTCATCGATGATTTCTGGGTATTGCAAGAAAGGTGATGTTAAGGAAGCCAAGTTCATCTTTGACAGAATCCCAGTCCGGAACTTGGTGAACTGGAATTCGATGATATCTGGCTATGCGCAAAATGGATTTTGTGAAGAAGCTTTGAACTCATTTCACAAAATGCAAGCCGAAGGCTTTGAGCCAGATGAATTTACTTTTGTGAGTGTTTTATCTGCCTGTGCTCAGTCTGGGCTGTTGGACATTGGCAAGGATATACATAGTATGTTAGGCCATAGAAGGATAAAGCTTAGTCAGATTGTTCTGAATGCACTTGTAGACATGTACGCAAAATGTGGCGATTTGATGAATGCTAGGTTGATCTTTGAGGGGATGACTGAGAGGAACACTGTGTGTTGGAATGCTATGATTTCGGGACTGGCCATTCACGGACAGTGCAAAGAGGCTCTTGAATTATTTGGAAGAATGGAAGATTCAAATGAAAGGCCTGATGATATAACCTTTATTTCTGTTCTGTTGGCTTGTGCACACGGGGGTTTTGTGGATGAAGGCATACAAATTTTCTCCAAGATGGAGGACTATGGTTTGGTAGCGGGGATTAAGCATTTTGGATGCGTGGTTGACCTTTATGGACGGGCAGGAAGATTAAGAGAGGCTTATGCTTTAATCAAGAGAATGCCAATCAAACCAAACGACATGGTTTGGGGGGCTATGCTTGGAGCATGCCGGATTTATATGGATATGGAGATGACGGAAAAGGTAGTGAAGGATATTAGCACCCTCAATTCAAACGTTGGGTCAGGTGATAATTCACATTATGTGCTTCTGTCAAATATATATGCTGCCTGTGATAGATGGGAGAAAGCTGAACGGACGAGGATTGACATGATAAGTGAAGGCTTTGAAAAGACACCGGCTCGCAGTTCATTTGTGCCCAGTGGCACATAA

Protein Analysis

555

Amino Acids

62.06

Weight (kDa)

7.85

Isoelectric Point (pI)

41.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 207 - 237 4.3e-06 PPR repeat
PPR_1 PF12854 236 - 261 7.8e-06 PPR repeat
PPR PF01535 239 - 266 5.7e-07 PPR repeat
PPR_2 PF13041 267 - 314 2.6e-11 PPR repeat family
PPR PF01535 270 - 299 5e-08 PPR repeat
TPR_24 PF23276 306 - 369 4.5e-06 Fungal tetratrico peptide repeats
PPR_2 PF13041 367 - 415 3.1e-10 PPR repeat family
PPR PF01535 370 - 398 6.1e-08 PPR repeat
E_motif PF20431 484 - 545 3.5e-09 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015465)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 146
Acc16I TGCGCA 1 cut(s) 837
AccI GTMKAC 1 cut(s) 1035
AccIII TCCGGA 1 cut(s) 795
AciI CCGC 8 cut(s) 174, 372, 511, 580, 599, 671, 698, 1310
AclI AACGTT 1 cut(s) 1509
AclWI GGATC 1 cut(s) 175
AcoI YGGCCR 1 cut(s) 1137
AcsI RAATTY 5 cut(s) 201, 322, 814, 908, 1275
AcyI GRCGYC 1 cut(s) 208
AdeI CACNNNGTG 1 cut(s) 1110
AfaI GTAC 3 cut(s) 194, 455, 1043
AfeI AGCGCT 1 cut(s) 183
AfiI CCNNNNNNNGG 2 cut(s) 204, 802
AflIII ACRYGT 2 cut(s) 357, 1038
AgsI TTSAA 7 cut(s) 41, 610, 865, 1169, 1194, 1506, 1622
AjiI CACGTC 1 cut(s) 345
AloI GAACNNNNNNTCC 2 cut(s) 755, 787
AluBI AGCT 3 cut(s) 860, 1006, 1583
AluI AGCT 3 cut(s) 860, 1006, 1583
Alw21I GWGCWC 2 cut(s) 943, 1246
Alw26I GTCTC 1 cut(s) 555
Alw44I GTGCAC 1 cut(s) 1242
AlwI GGATC 1 cut(s) 175
Aor13HI TCCGGA 1 cut(s) 795
Aor51HI AGCGCT 1 cut(s) 183
AoxI GGCC 5 cut(s) 229, 252, 988, 1137, 1202
ApaLI GTGCAC 1 cut(s) 1242
ApeKI GCWGC 2 cut(s) 700, 1559
ApoI RAATTY 5 cut(s) 201, 322, 814, 908, 1275
ArsI GACNNNNNNTTYG 4 cut(s) 193, 225, 1499, 1531
AspLEI GCGC 2 cut(s) 184, 838
AsuC2I CCSGG 1 cut(s) 391
AsuHPI GGTGA 5 cut(s) 146, 162, 764, 817, 1532
BaeGI GKGCMC 2 cut(s) 1246, 1653
BalI TGGCCA 1 cut(s) 1139
Bbv12I GWGCWC 2 cut(s) 943, 1246
BbvI GCAGC 2 cut(s) 712, 1546
BccI CCATC 4 cut(s) 635, 658, 1282, 1566
BcgI CGANNNNNNTGC 2 cut(s) 530, 564
BclI TGATCA 1 cut(s) 589
BcnI CCSGG 1 cut(s) 391
BcoDI GTCTC 1 cut(s) 555
BfaI CTAG 3 cut(s) 576, 651, 1071
BfoI RGCGCY 1 cut(s) 185
BisI GCNGC 4 cut(s) 672, 698, 701, 1560
BlsI GCNGC 4 cut(s) 673, 699, 702, 1561
Bme1390I CCNGG 1 cut(s) 391
BmgBI CACGTC 1 cut(s) 345
BmiI GGNNCC 1 cut(s) 597
BmrFI CCNGG 1 cut(s) 391
BmrI ACTGGG 2 cut(s) 785, 1647
BmsI GCATC 1 cut(s) 1319
BmuI ACTGGG 2 cut(s) 785, 1647
BpuEI CTTGAG 3 cut(s) 147, 233, 478
BpuMI CCSGG 1 cut(s) 391
Bsa29I ATCGAT 1 cut(s) 725
BsaHI GRCGYC 1 cut(s) 208
BsaWI WCCGGW 1 cut(s) 795
BsaXI ACNNNNNCTCC 2 cut(s) 552, 582
Bsc4I CCNNNNNNNGG 2 cut(s) 204, 802
Bse118I RCCGGY 1 cut(s) 1630
Bse1I ACTGG 4 cut(s) 791, 815, 1140, 1653
Bse3DI GCAATG 3 cut(s) 290, 661, 699
BseAI TCCGGA 1 cut(s) 795
BseCI ATCGAT 1 cut(s) 725
BseGI GGATG 3 cut(s) 1095, 1267, 1334
BseLI CCNNNNNNNGG 2 cut(s) 204, 802
BseMI GCAATG 3 cut(s) 290, 661, 699
BseMII CTCAG 3 cut(s) 405, 956, 1086
BseNI ACTGG 4 cut(s) 791, 815, 1140, 1653
BseRI GAGGAG 1 cut(s) 568
BseSI GKGCMC 2 cut(s) 1246, 1653
BseXI GCAGC 2 cut(s) 712, 1546
BsgI GTGCAG 1 cut(s) 85
BshFI GGCC 5 cut(s) 231, 254, 990, 1139, 1204
BshVI ATCGAT 1 cut(s) 725
BsiHKAI GWGCWC 2 cut(s) 943, 1246
BsiSI CCGG 4 cut(s) 391, 796, 1444, 1631
BslFI GGGAC 2 cut(s) 373, 1146
BslI CCNNNNNNNGG 2 cut(s) 204, 802
BsmAI GTCTC 1 cut(s) 555
BsmFI GGGAC 2 cut(s) 373, 1146
BsmI GAATGC 5 cut(s) 442, 1030, 1072, 1123, 1398
BsnI GGCC 5 cut(s) 231, 254, 990, 1139, 1204
Bsp1286I GDGCHC 3 cut(s) 943, 1246, 1653
Bsp13I TCCGGA 1 cut(s) 795
Bsp1407I TGTACA 1 cut(s) 192
Bsp143I GATC 4 cut(s) 167, 537, 589, 1077
BspACI CCGC 8 cut(s) 174, 372, 511, 580, 599, 671, 698, 1310
BspANI GGCC 5 cut(s) 231, 254, 990, 1139, 1204
BspCNI CTCAG 3 cut(s) 406, 955, 1087
BspDI ATCGAT 1 cut(s) 725
BspEI TCCGGA 1 cut(s) 795
BspLI GGNNCC 1 cut(s) 597
BspPI GGATC 1 cut(s) 175
BsrDI GCAATG 3 cut(s) 290, 661, 699
BsrFI RCCGGY 1 cut(s) 1630
BsrGI TGTACA 1 cut(s) 192
BsrI ACTGG 4 cut(s) 791, 815, 1140, 1653
BssAI RCCGGY 1 cut(s) 1630
BssMI GATC 4 cut(s) 167, 537, 589, 1077
BssNI GRCGYC 1 cut(s) 208
Bst4CI ACNGT 4 cut(s) 568, 631, 1108, 1152
Bst6I CTCTTC 1 cut(s) 42
BstACI GRCGYC 1 cut(s) 208
BstAUI TGTACA 1 cut(s) 192
BstC8I GCNNGC 5 cut(s) 297, 374, 885, 1441, 1636
BstDEI CTNAG 4 cut(s) 414, 942, 1007, 1095
BstF5I GGATG 3 cut(s) 1095, 1267, 1334
BstH2I RGCGCY 1 cut(s) 185
BstHHI GCGC 2 cut(s) 184, 838
BstKTI GATC 4 cut(s) 170, 540, 592, 1080
BstMAI GTCTC 1 cut(s) 555
BstMBI GATC 4 cut(s) 167, 537, 589, 1077
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstNSI RCATGY 3 cut(s) 361, 1042, 1443
BstSCI CCNGG 1 cut(s) 389
BstSLI GKGCMC 2 cut(s) 1246, 1653
BstV1I GCAGC 2 cut(s) 712, 1546
Bsu15I ATCGAT 1 cut(s) 725
BsuRI GGCC 5 cut(s) 231, 254, 990, 1139, 1204
BsuTUI ATCGAT 1 cut(s) 725
BtgZI GCGATG 1 cut(s) 455
BtrI CACGTC 1 cut(s) 345
BtsCI GGATG 3 cut(s) 1095, 1267, 1334
BtsI GCAGTG 1 cut(s) 28
BtsIMutI CAGTG 5 cut(s) 28, 564, 1104, 1157, 1660
Cac8I GCNNGC 5 cut(s) 297, 374, 885, 1441, 1636
CfoI GCGC 2 cut(s) 184, 838
Cfr10I RCCGGY 1 cut(s) 1630
ClaI ATCGAT 1 cut(s) 725
CseI GACGC 1 cut(s) 197
Csp6I GTAC 3 cut(s) 193, 454, 1042
CviAII CATG 8 cut(s) 17, 92, 358, 432, 1039, 1414, 1440, 1603
CviQI GTAC 3 cut(s) 193, 454, 1042
DdeI CTNAG 4 cut(s) 414, 942, 1007, 1095
DpnI GATC 4 cut(s) 169, 539, 591, 1079
DpnII GATC 4 cut(s) 167, 537, 589, 1077
DraIII CACNNNGTG 1 cut(s) 1110
EaeI YGGCCR 1 cut(s) 1137
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
Eco147I AGGCCT 3 cut(s) 231, 254, 1204
Eco32I GATATC 1 cut(s) 825
Eco47III AGCGCT 1 cut(s) 183
EcoRI GAATTC 3 cut(s) 201, 322, 814
EcoRV GATATC 1 cut(s) 825
FaeI CATG 8 cut(s) 20, 95, 361, 435, 1042, 1417, 1443, 1606
FalI AAGNNNNNCTT 8 cut(s) 171, 203, 761, 793, 1149, 1181, 1357, 1389
FaqI GGGAC 2 cut(s) 373, 1146
FatI CATG 8 cut(s) 16, 91, 357, 431, 1038, 1413, 1439, 1602
FauI CCCGC 3 cut(s) 181, 365, 1303
FbaI TGATCA 1 cut(s) 589
FblI GTMKAC 1 cut(s) 1035
Fnu4HI GCNGC 4 cut(s) 672, 698, 701, 1560
FokI GGATG 3 cut(s) 1102, 1274, 1341
Fsp4HI GCNGC 4 cut(s) 672, 698, 701, 1560
FspBI CTAG 3 cut(s) 576, 651, 1071
FspI TGCGCA 1 cut(s) 837
GlaI GCGC 2 cut(s) 183, 837
GluI GCNGC 4 cut(s) 672, 698, 701, 1560
HaeII RGCGCY 1 cut(s) 185
HaeIII GGCC 5 cut(s) 231, 254, 990, 1139, 1204
HapII CCGG 4 cut(s) 391, 796, 1444, 1631
HgaI GACGC 1 cut(s) 197
HhaI GCGC 2 cut(s) 184, 838
Hin1I GRCGYC 1 cut(s) 208
Hin1II CATG 8 cut(s) 20, 95, 361, 435, 1042, 1417, 1443, 1606
Hin6I GCGC 2 cut(s) 182, 836
HinP1I GCGC 2 cut(s) 182, 836
HincII GTYRAC 2 cut(s) 355, 1339
HindII GTYRAC 2 cut(s) 355, 1339
HindIII AAGCTT 2 cut(s) 858, 1004
HinfI GANTC 7 cut(s) 151, 216, 244, 302, 386, 786, 1190
HpaII CCGG 4 cut(s) 391, 796, 1444, 1631
HphI GGTGA 5 cut(s) 146, 162, 764, 817, 1532
Hpy166II GTNNAC 8 cut(s) 193, 195, 355, 627, 808, 1036, 1244, 1339
Hpy188I TCNGA 3 cut(s) 328, 1014, 1023
Hpy188III TCNNGA 4 cut(s) 796, 1131, 1166, 1387
Hpy8I GTNNAC 8 cut(s) 193, 195, 355, 627, 808, 1036, 1244, 1339
Hpy99I CGWCG 1 cut(s) 545
HpyAV CCTTC 7 cut(s) 242, 280, 884, 990, 1259, 1477, 1607
HpyCH4III ACNGT 4 cut(s) 568, 631, 1108, 1152
HpyCH4IV ACGT 2 cut(s) 344, 1509
HpyCH4V TGCA 9 cut(s) 102, 128, 295, 482, 744, 883, 1028, 1155, 1244
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpyF3I CTNAG 4 cut(s) 414, 942, 1007, 1095
HpySE526I ACGT 2 cut(s) 344, 1509
Hsp92I GRCGYC 1 cut(s) 208
Hsp92II CATG 8 cut(s) 20, 95, 361, 435, 1042, 1417, 1443, 1606
HspAI GCGC 2 cut(s) 182, 836
Kpn2I TCCGGA 1 cut(s) 795
Ksp22I TGATCA 1 cut(s) 589
Kzo9I GATC 4 cut(s) 167, 537, 589, 1077
LmnI GCTCC 1 cut(s) 1436
Lsp1109I GCAGC 2 cut(s) 712, 1546
LweI GCATC 1 cut(s) 1319
MaeI CTAG 3 cut(s) 576, 651, 1071
MaeII ACGT 2 cut(s) 344, 1509
MaeIII GTNAC 3 cut(s) 3, 427, 520
MalI GATC 4 cut(s) 169, 539, 591, 1079
MboI GATC 4 cut(s) 167, 537, 589, 1077
MboII GAAGA 8 cut(s) 29, 227, 511, 622, 866, 1191, 1199, 1371
MhlI GDGCHC 3 cut(s) 943, 1246, 1653
MlsI TGGCCA 1 cut(s) 1139
MluNI TGGCCA 1 cut(s) 1139
MlyI GAGTC 2 cut(s) 311, 395
MmeI TCCRAC 2 cut(s) 936, 1094
Mox20I TGGCCA 1 cut(s) 1139
MroI TCCGGA 1 cut(s) 795
MscI TGGCCA 1 cut(s) 1139
MseI TTAA 4 cut(s) 759, 1317, 1364, 1382
Msp20I TGGCCA 1 cut(s) 1139
MspI CCGG 4 cut(s) 391, 796, 1444, 1631
MspR9I CCNGG 1 cut(s) 391
Mva1269I GAATGC 5 cut(s) 442, 1030, 1072, 1123, 1398
MwoI GCNNNNNNNGC 1 cut(s) 296
NciI CCSGG 1 cut(s) 391
NdeII GATC 4 cut(s) 167, 537, 589, 1077
NlaIII CATG 8 cut(s) 20, 95, 361, 435, 1042, 1417, 1443, 1606
NlaIV GGNNCC 1 cut(s) 597
NmeAIII GCCGAG 1 cut(s) 325
NmuCI GTSAC 3 cut(s) 3, 427, 520
NsbI TGCGCA 1 cut(s) 837
NspI RCATGY 3 cut(s) 361, 1042, 1443
PaeI GCATGC 1 cut(s) 1443
PceI AGGCCT 3 cut(s) 231, 254, 1204
PciI ACATGT 2 cut(s) 357, 1038
PctI GAATGC 5 cut(s) 442, 1030, 1072, 1123, 1398
PfeI GAWTC 5 cut(s) 151, 216, 244, 786, 1190
PfoI TCCNGGA 1 cut(s) 389
PkrI GCNGC 4 cut(s) 673, 699, 702, 1561
PleI GAGTC 2 cut(s) 310, 394
PpsI GAGTC 2 cut(s) 310, 394
PscI ACATGT 2 cut(s) 357, 1038
PsiI TTATAA 1 cut(s) 146
Psp1406I AACGTT 1 cut(s) 1509
PspN4I GGNNCC 1 cut(s) 597
RsaI GTAC 3 cut(s) 194, 455, 1043
RsaNI GTAC 3 cut(s) 193, 454, 1042
SaqAI TTAA 4 cut(s) 759, 1317, 1364, 1382
SatI GCNGC 4 cut(s) 672, 698, 701, 1560
Sau3AI GATC 4 cut(s) 167, 537, 589, 1077
SchI GAGTC 2 cut(s) 311, 395
ScrFI CCNGG 1 cut(s) 391
SduI GDGCHC 3 cut(s) 943, 1246, 1653
SfaNI GCATC 1 cut(s) 1319
SmlI CTYRAG 3 cut(s) 162, 248, 457
SmoI CTYRAG 3 cut(s) 162, 248, 457
SphI GCATGC 1 cut(s) 1443
SseBI AGGCCT 3 cut(s) 231, 254, 1204
SsiI CCGC 8 cut(s) 174, 372, 511, 580, 599, 671, 698, 1310
SspMI CTAG 3 cut(s) 576, 651, 1071
StuI AGGCCT 3 cut(s) 231, 254, 1204
StyD4I CCNGG 1 cut(s) 389
TaaI ACNGT 4 cut(s) 568, 631, 1108, 1152
TaiI ACGT 2 cut(s) 347, 1512
TaqI TCGA 3 cut(s) 540, 725, 818
TatI WGTACW 1 cut(s) 192
TauI GCSGC 2 cut(s) 674, 700
TfiI GAWTC 5 cut(s) 151, 216, 244, 786, 1190
Tru1I TTAA 4 cut(s) 759, 1317, 1364, 1382
Tru9I TTAA 4 cut(s) 759, 1317, 1364, 1382
TscAI CASTG 5 cut(s) 35, 571, 1111, 1157, 1660
TseFI GTSAC 3 cut(s) 3, 427, 520
TseI GCWGC 2 cut(s) 700, 1559
Tsp45I GTSAC 3 cut(s) 3, 427, 520
TspDTI ATGAA 7 cut(s) 335, 763, 921, 1079, 1212, 1278, 1632
TspGWI ACGGA 4 cut(s) 125, 1161, 1484, 1603
TspRI CASTG 5 cut(s) 35, 571, 1111, 1157, 1660
VneI GTGCAC 1 cut(s) 1242
XapI RAATTY 5 cut(s) 201, 322, 814, 908, 1275
XceI RCATGY 3 cut(s) 361, 1042, 1443
XmiI GTMKAC 1 cut(s) 1035
XspI CTAG 3 cut(s) 576, 651, 1071
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.