RLG00000013306

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0015465
Physical Location & Seq
Forward (+)
29502150 .. 29503544
1395 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013306

Sequence Viewer

Length: 1395 bp
ATGAACCATGGGAAATCGGTGCACGCAGAGTGTATCAAGGCTGGCGTGCATTGTGATGTAGTGGTTGGCACCTCATTGGTTGACATGTATGCGAAGTGCGGGGACGTTTTTGAGTCCCGGAAAGTGTTTGATTATATGCCTGAGAGAAATGTGGTAAGCTGGAATGCCATGATTGGTGGGTACTGGAGAAATGGGGATGCGGCATCTGCGTTGGTTTTGTTTGAGAAGATGTCAATGCGGACGTATGTGACTTGGGCTGAGATGATCACCGGGTTTGCAAGGACTGGAGATACTGTCGGTGCTAGGCGGTTTTTTGATCAGGTTCCAATGGAGTTGAAGAATGTGATTACGTGGACTGTGATGGTTGATGGGTATTGTAGCAATGGGCAGATGGAGATGGCGAGGGAAGTTTTCGAGGCAATGCCCCAGCGCAATCACTTTGTTTGGTCATCAATGATTTCTGGGTATTGCAAGTCAGGTGATGTTGAGGAGGCTGAGATCGTTTTCGATAGAATCCCAGTCCGGAACTTGGTGAATTGGAATTCCATGATATCTGGATATGCGCAAAATGGGTTTTGCGAGGAAGCTTTGAAAGCGTTTGAGAACATGCAAGCCGAAGGCTTTGAGCCAGATGAATTCACTGCTGTGAGTGTTTTATCTGCATGTGCTCAGTCTGGGCTATTAGATGTTGGCAAGGATATACATAACATGTTGAGTCATAAAAGGATAAAGCTCAATCAGATTGTTCTCAATGCACTTGTAGACATGTATGCAAAATGTGGCGACTTGATCAATGCAAGGTTGATCTTTGGTGAGATGACTGAGAGGAACAGTGCTTGTTGGAATGCTATGATTTCAAGCATGGCTATTCATGGACAGTGCAAGGAGGCTCTTGAATTGTTTAGCAGAATGGAGGATTCAAATGAAAAGCCTGATGAGATAACCTTTCTTTCTGCTCTGTCAGCTTGTGCACATGGAGGTCTAGTAGATGAAGGCATGGAACTTTTCTCCAAGATGCAGAAGAAATATGGTTTGGAAGCAGGAATTAAGCATTATGGGTGCTTAGTTGACCTTTTGGGACGGGCTGGAAGGTTAAGAGAGGCTTACGCTTTAGTCAAAAGTATGCCCATGAAACCCAATGACCTGGTTTGGGGGGCTATGCTTGGAGCTTGCCGGATTTATATGGATATGGAAACGACAGAACAGGTAGCAAAGGATATTAGCACTCAAAATTCAGACAATCTGTCAGGCGATAATTCACATTATGTGCTTCTGTCAAATATTTATGCTGCTTCTGATAGATGGGAGAAAGCTGAAAGGACGAGAATGGACTTGGTAAACGAAGGCTTTCAAAAGACACCTGCTCACAGTGCATTTATGCCCTGCGGCGCATAG

Protein Analysis

465

Amino Acids

51.8

Weight (kDa)

5.28

Isoelectric Point (pI)

35.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 49 - 79 6.7e-06 PPR repeat family
PPR PF01535 52 - 78 9.4e-06 PPR repeat
PPR_2 PF13041 113 - 145 9.4e-08 PPR repeat family
PPR_1 PF12854 114 - 141 2.1e-06 PPR repeat
PPR PF01535 116 - 145 2.8e-08 PPR repeat
PPR_1 PF12854 145 - 171 1.1e-06 PPR repeat
PPR PF01535 148 - 175 8.3e-08 PPR repeat
PPR_2 PF13041 176 - 223 7.3e-11 PPR repeat family
PPR PF01535 179 - 208 1.1e-08 PPR repeat
PPR_2 PF13041 277 - 325 8e-10 PPR repeat family
PPR PF01535 280 - 307 1.3e-06 PPR repeat
E_motif PF20431 416 - 456 1.9e-07 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015465)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21470
fragaria_vesca FvH4_2g14800 FvH4_7g25011
malus_domestica MD05G1012400.v1.1
prunus_persica Prupe.8G017700_v2.0.a1
pyrus_communis pycom05g00720
rosa_chinensis RchiOBHm_Chr6g0277371
rosa_laevigata RLG00000013306 RLG00000029733
rosa_multiflora Rmu_co8197674.1_g000001 Rmu_sc0000030.1_g000011
rosa_roxburghii Rroxscaffold_7G00191390
rosa_rugosa Rorug01G0093200 Rorug06G0107700
rosa_samantha Rh6AG218600 Rh6DG215300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1369
Acc16I TGCGCA 1 cut(s) 564
Acc36I ACCTGC 1 cut(s) 1369
AccB1I GGYRCC 1 cut(s) 68
AccI GTMKAC 1 cut(s) 762
AccIII TCCGGA 1 cut(s) 522
AciI CCGC 5 cut(s) 99, 200, 238, 307, 1386
AcsI RAATTY 3 cut(s) 541, 635, 1231
AfaI GTAC 1 cut(s) 182
AfiI CCNNNNNNNGG 2 cut(s) 529, 1150
AflIII ACRYGT 3 cut(s) 84, 708, 765
AgsI TTSAA 6 cut(s) 337, 592, 858, 896, 921, 1352
AhdI GACNNNNNGTC 1 cut(s) 1243
AjnI CCWGG 1 cut(s) 1143
AjuI GAANNNNNNNTTGG 2 cut(s) 1016, 1048
AleI CACNNNNGTG 1 cut(s) 644
AluBI AGCT 6 cut(s) 159, 587, 733, 965, 1169, 1313
AluI AGCT 6 cut(s) 159, 587, 733, 965, 1169, 1313
Alw21I GWGCWC 3 cut(s) 24, 670, 973
Alw44I GTGCAC 2 cut(s) 20, 969
Aor13HI TCCGGA 1 cut(s) 522
ApaLI GTGCAC 2 cut(s) 20, 969
ApeKI GCWGC 1 cut(s) 1289
ApoI RAATTY 3 cut(s) 541, 635, 1231
Asp700I GAANNNNTTC 1 cut(s) 1347
AspLEI GCGC 3 cut(s) 432, 565, 1391
AsuC2I CCSGG 2 cut(s) 118, 271
AsuHPI GGTGA 4 cut(s) 259, 491, 544, 824
BaeGI GKGCMC 2 cut(s) 24, 973
BanI GGYRCC 1 cut(s) 68
Bbv12I GWGCWC 3 cut(s) 24, 670, 973
BbvI GCAGC 1 cut(s) 1276
BccI CCATC 5 cut(s) 355, 362, 385, 391, 1296
BciT130I CCWGG 1 cut(s) 1145
BclI TGATCA 3 cut(s) 264, 316, 789
BcnI CCSGG 2 cut(s) 118, 271
BfaI CTAG 2 cut(s) 303, 983
BfuAI ACCTGC 1 cut(s) 1369
BisI GCNGC 3 cut(s) 201, 1290, 1387
BlsI GCNGC 3 cut(s) 202, 1291, 1388
Bme1390I CCNGG 3 cut(s) 118, 271, 1145
BmeRI GACNNNNNGTC 1 cut(s) 1243
BmiI GGNNCC 2 cut(s) 70, 324
BmrFI CCNGG 3 cut(s) 118, 271, 1145
BmrI ACTGGG 1 cut(s) 512
BmsI GCATC 3 cut(s) 187, 212, 1005
BmuI ACTGGG 1 cut(s) 512
BpmI CTGGAG 2 cut(s) 205, 306
BpuMI CCSGG 2 cut(s) 118, 271
BsaAI YACGTR 1 cut(s) 351
BsaJI CCNNGG 1 cut(s) 7
BsaWI WCCGGW 1 cut(s) 522
BsaXI ACNNNNNCTCC 4 cut(s) 279, 309, 969, 999
Bsc4I CCNNNNNNNGG 2 cut(s) 529, 1150
Bse1I ACTGG 3 cut(s) 188, 289, 518
Bse3DI GCAATG 2 cut(s) 388, 426
BseAI TCCGGA 1 cut(s) 522
BseBI CCWGG 1 cut(s) 1145
BseDI CCNNGG 1 cut(s) 7
BseGI GGATG 1 cut(s) 202
BseLI CCNNNNNNNGG 2 cut(s) 529, 1150
BseMI GCAATG 2 cut(s) 388, 426
BseMII CTCAG 5 cut(s) 132, 249, 486, 683, 813
BseNI ACTGG 3 cut(s) 188, 289, 518
BseRI GAGGAG 1 cut(s) 503
BseSI GKGCMC 2 cut(s) 24, 973
BseXI GCAGC 1 cut(s) 1276
BseYI CCCAGC 1 cut(s) 426
BshNI GGYRCC 1 cut(s) 68
BsiHKAI GWGCWC 3 cut(s) 24, 670, 973
BsiSI CCGG 4 cut(s) 118, 270, 523, 1174
BslFI GGGAC 3 cut(s) 100, 116, 1092
BslI CCNNNNNNNGG 2 cut(s) 529, 1150
BsmFI GGGAC 3 cut(s) 100, 116, 1092
BsmI GAATGC 2 cut(s) 169, 850
Bsp1286I GDGCHC 3 cut(s) 24, 670, 973
Bsp13I TCCGGA 1 cut(s) 522
Bsp143I GATC 5 cut(s) 264, 316, 498, 789, 804
Bsp19I CCATGG 1 cut(s) 7
BspACI CCGC 5 cut(s) 99, 200, 238, 307, 1386
BspCNI CTCAG 5 cut(s) 133, 250, 487, 682, 814
BspEI TCCGGA 1 cut(s) 522
BspLI GGNNCC 2 cut(s) 70, 324
BspMI ACCTGC 1 cut(s) 1369
BspT107I GGYRCC 1 cut(s) 68
BsrDI GCAATG 2 cut(s) 388, 426
BsrI ACTGG 3 cut(s) 188, 289, 518
BssECI CCNNGG 1 cut(s) 7
BssMI GATC 5 cut(s) 264, 316, 498, 789, 804
BssT1I CCWWGG 1 cut(s) 7
Bst2UI CCWGG 1 cut(s) 1145
Bst4CI ACNGT 5 cut(s) 295, 358, 833, 879, 1370
BstBAI YACGTR 1 cut(s) 351
BstC8I GCNNGC 5 cut(s) 24, 43, 47, 612, 1171
BstDEI CTNAG 6 cut(s) 141, 258, 495, 669, 822, 1063
BstDSI CCRYGG 1 cut(s) 7
BstF5I GGATG 1 cut(s) 202
BstHHI GCGC 3 cut(s) 432, 565, 1391
BstKTI GATC 5 cut(s) 267, 319, 501, 792, 807
BstMBI GATC 5 cut(s) 264, 316, 498, 789, 804
BstMWI GCNNNNNNNGC 4 cut(s) 206, 593, 962, 1370
BstNI CCWGG 1 cut(s) 1145
BstNSI RCATGY 5 cut(s) 88, 610, 666, 712, 769
BstSCI CCNGG 3 cut(s) 116, 269, 1143
BstSLI GKGCMC 2 cut(s) 24, 973
BstV1I GCAGC 1 cut(s) 1276
BstXI CCANNNNNNTGG 1 cut(s) 1144
BtgI CCRYGG 1 cut(s) 7
BtsCI GGATG 1 cut(s) 202
BtsI GCAGTG 1 cut(s) 639
BtsIMutI CAGTG 4 cut(s) 639, 838, 884, 1375
BveI ACCTGC 1 cut(s) 1369
Cac8I GCNNGC 5 cut(s) 24, 43, 47, 612, 1171
CfoI GCGC 3 cut(s) 432, 565, 1391
CsiI ACCWGGT 1 cut(s) 1143
Csp6I GTAC 1 cut(s) 181
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 6 cut(s) 141, 258, 495, 669, 822, 1063
DpnI GATC 5 cut(s) 266, 318, 500, 791, 806
DpnII GATC 5 cut(s) 264, 316, 498, 789, 804
DriI GACNNNNNGTC 1 cut(s) 1243
Eam1105I GACNNNNNGTC 1 cut(s) 1243
Eco130I CCWWGG 1 cut(s) 7
Eco32I GATATC 1 cut(s) 552
EcoRI GAATTC 2 cut(s) 541, 635
EcoRII CCWGG 1 cut(s) 1143
EcoRV GATATC 1 cut(s) 552
EcoT14I CCWWGG 1 cut(s) 7
ErhI CCWWGG 1 cut(s) 7
FalI AAGNNNNNCTT 2 cut(s) 1087, 1119
FaqI GGGAC 3 cut(s) 100, 116, 1092
FauI CCCGC 1 cut(s) 92
FbaI TGATCA 3 cut(s) 264, 316, 789
FblI GTMKAC 1 cut(s) 762
Fnu4HI GCNGC 3 cut(s) 201, 1290, 1387
FokI GGATG 1 cut(s) 209
Fsp4HI GCNGC 3 cut(s) 201, 1290, 1387
FspBI CTAG 2 cut(s) 303, 983
FspI TGCGCA 1 cut(s) 564
GlaI GCGC 3 cut(s) 431, 564, 1390
GluI GCNGC 3 cut(s) 201, 1290, 1387
GsaI CCCAGC 1 cut(s) 430
GsuI CTGGAG 2 cut(s) 205, 306
HapII CCGG 4 cut(s) 118, 270, 523, 1174
HhaI GCGC 3 cut(s) 432, 565, 1391
Hin6I GCGC 3 cut(s) 430, 563, 1389
HinP1I GCGC 3 cut(s) 430, 563, 1389
HincII GTYRAC 2 cut(s) 82, 1069
HindII GTYRAC 2 cut(s) 82, 1069
HindIII AAGCTT 1 cut(s) 585
HinfI GANTC 4 cut(s) 113, 513, 715, 917
HpaII CCGG 4 cut(s) 118, 270, 523, 1174
HphI GGTGA 4 cut(s) 259, 491, 544, 824
Hpy166II GTNNAC 7 cut(s) 22, 82, 354, 763, 971, 1069, 1339
Hpy188I TCNGA 3 cut(s) 741, 1237, 1297
Hpy188III TCNNGA 3 cut(s) 523, 555, 893
Hpy8I GTNNAC 7 cut(s) 22, 82, 354, 763, 971, 1069, 1339
HpyAV CCTTC 4 cut(s) 611, 986, 1083, 1337
HpyCH4III ACNGT 5 cut(s) 295, 358, 833, 879, 1370
HpyCH4IV ACGT 3 cut(s) 105, 242, 350
HpyF10VI GCNNNNNNNGC 4 cut(s) 206, 593, 962, 1370
HpyF3I CTNAG 6 cut(s) 141, 258, 495, 669, 822, 1063
HpySE526I ACGT 3 cut(s) 105, 242, 350
HspAI GCGC 3 cut(s) 430, 563, 1389
Kpn2I TCCGGA 1 cut(s) 522
Ksp22I TGATCA 3 cut(s) 264, 316, 789
Kzo9I GATC 5 cut(s) 264, 316, 498, 789, 804
LmnI GCTCC 1 cut(s) 1166
Lsp1109I GCAGC 1 cut(s) 1276
LweI GCATC 3 cut(s) 187, 212, 1005
MabI ACCWGGT 1 cut(s) 1143
MaeI CTAG 2 cut(s) 303, 983
MaeII ACGT 3 cut(s) 105, 242, 350
MaeIII GTNAC 1 cut(s) 247
MalI GATC 5 cut(s) 266, 318, 500, 791, 806
MboI GATC 5 cut(s) 264, 316, 498, 789, 804
MboII GAAGA 3 cut(s) 238, 349, 1033
MhlI GDGCHC 3 cut(s) 24, 670, 973
MluCI AATT 7 cut(s) 535, 541, 635, 896, 1044, 1231, 1255
MlyI GAGTC 2 cut(s) 122, 724
MmeI TCCRAC 1 cut(s) 821
MroI TCCGGA 1 cut(s) 522
MroXI GAANNNNTTC 1 cut(s) 1347
MseI TTAA 2 cut(s) 1047, 1094
MslI CAYNNNNRTG 2 cut(s) 54, 644
MspI CCGG 4 cut(s) 118, 270, 523, 1174
MspR9I CCNGG 3 cut(s) 118, 271, 1145
Mva1269I GAATGC 2 cut(s) 169, 850
MvaI CCWGG 1 cut(s) 1145
MwoI GCNNNNNNNGC 4 cut(s) 206, 593, 962, 1370
NciI CCSGG 2 cut(s) 118, 271
NcoI CCATGG 1 cut(s) 7
NdeII GATC 5 cut(s) 264, 316, 498, 789, 804
NlaIV GGNNCC 2 cut(s) 70, 324
NmuCI GTSAC 1 cut(s) 247
NsbI TGCGCA 1 cut(s) 564
NspI RCATGY 5 cut(s) 88, 610, 666, 712, 769
OliI CACNNNNGTG 1 cut(s) 644
PaqCI CACCTGC 1 cut(s) 1369
PciI ACATGT 3 cut(s) 84, 708, 765
PctI GAATGC 2 cut(s) 169, 850
PdmI GAANNNNTTC 1 cut(s) 1347
PfeI GAWTC 2 cut(s) 513, 917
PfoI TCCNGGA 1 cut(s) 116
PkrI GCNGC 3 cut(s) 202, 1291, 1388
PleI GAGTC 2 cut(s) 121, 723
PpsI GAGTC 2 cut(s) 121, 723
Ppu21I YACGTR 1 cut(s) 351
PscI ACATGT 3 cut(s) 84, 708, 765
Psp6I CCWGG 1 cut(s) 1143
PspFI CCCAGC 1 cut(s) 426
PspGI CCWGG 1 cut(s) 1143
PspN4I GGNNCC 2 cut(s) 70, 324
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
RseI CAYNNNNRTG 2 cut(s) 54, 644
SaqAI TTAA 2 cut(s) 1047, 1094
SatI GCNGC 3 cut(s) 201, 1290, 1387
Sau3AI GATC 5 cut(s) 264, 316, 498, 789, 804
SchI GAGTC 2 cut(s) 122, 724
ScrFI CCNGG 3 cut(s) 118, 271, 1145
SduI GDGCHC 3 cut(s) 24, 670, 973
SexAI ACCWGGT 1 cut(s) 1143
SfaNI GCATC 3 cut(s) 187, 212, 1005
SmiMI CAYNNNNRTG 2 cut(s) 54, 644
Sse9I AATT 7 cut(s) 535, 541, 635, 896, 1044, 1231, 1255
SsiI CCGC 5 cut(s) 99, 200, 238, 307, 1386
SspI AATATT 1 cut(s) 1282
SspMI CTAG 2 cut(s) 303, 983
StyD4I CCNGG 3 cut(s) 116, 269, 1143
StyI CCWWGG 1 cut(s) 7
TaaI ACNGT 5 cut(s) 295, 358, 833, 879, 1370
TaiI ACGT 3 cut(s) 108, 245, 353
TaqI TCGA 2 cut(s) 414, 507
TasI AATT 7 cut(s) 535, 541, 635, 896, 1044, 1231, 1255
TauI GCSGC 2 cut(s) 203, 1389
TfiI GAWTC 2 cut(s) 513, 917
Tru1I TTAA 2 cut(s) 1047, 1094
Tru9I TTAA 2 cut(s) 1047, 1094
TscAI CASTG 4 cut(s) 646, 838, 884, 1375
TseFI GTSAC 1 cut(s) 247
TseI GCWGC 1 cut(s) 1289
Tsp45I GTSAC 1 cut(s) 247
TspDTI ATGAA 6 cut(s) 17, 648, 860, 939, 1005, 1145
TspRI CASTG 4 cut(s) 646, 838, 884, 1375
VneI GTGCAC 2 cut(s) 20, 969
XapI RAATTY 3 cut(s) 541, 635, 1231
XceI RCATGY 5 cut(s) 88, 610, 666, 712, 769
XmiI GTMKAC 1 cut(s) 762
XmnI GAANNNNTTC 1 cut(s) 1347
XspI CTAG 2 cut(s) 303, 983
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.