Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8197674.1

Orthogroup ID

OG0015465

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 490

Gene Structure 489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8197674.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atgaaccatgggaaatcggtgcacgcagagtgtgtcaaggctggcgtgcattgtgatgtagtggttggcacctcattggttgacatgtatgcgaaatgcggggacgtttttgagtcccggaaagtgtttgactatatgcctcacagaaatgcggtaagttggaatgccatgattggtgggtactggagaaatggggatgcagcatctgcgttggttttgtttgagaagatgtcaatgcggacgtatgtgacttgggctgagatgatcaccgggtttgcaaggactggagatactgttactgctaggcggttttttgatcaggttccaccggagttgaagaatgtgattacgtggactgtgatggttgatgggtattgtagcaatgggcagatggggatggcgaggcaagttttcgaggcaatgccccggcgcaatcactttgtttggtcatcaatgatttctgggtattgcaagttaggtgatgttgag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

163

Amino Acids

18.36

Weight (kDa)

7.67

Isoelectric Point (pI)

31.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015465)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21470
fragaria_vesca	FvH4_2g14800 FvH4_7g25011
malus_domestica	MD05G1012400.v1.1
prunus_persica	Prupe.8G017700_v2.0.a1
pyrus_communis	pycom05g00720
rosa_chinensis	RchiOBHm_Chr6g0277371
rosa_laevigata	RLG00000013306 RLG00000029733
rosa_multiflora	Rmu_co8197674.1_g000001 Rmu_sc0000030.1_g000011
rosa_roxburghii	Rroxscaffold_7G00191390
rosa_rugosa	Rorug01G0093200 Rorug06G0107700
rosa_samantha	Rh6AG218600 Rh6DG215300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	68
AciI	CCGC	4 cut(s)	99, 152, 238, 307
AfaI	GTAC	1 cut(s)	182
AflIII	ACRYGT	1 cut(s)	84
AgsI	TTSAA	1 cut(s)	337
Alw21I	GWGCWC	1 cut(s)	24
Alw44I	GTGCAC	1 cut(s)	20
AlwNI	CAGNNNCTG	1 cut(s)	206
ApaLI	GTGCAC	1 cut(s)	20
ApeKI	GCWGC	1 cut(s)	200
AspLEI	GCGC	1 cut(s)	432
AsuC2I	CCSGG	3 cut(s)	118, 271, 427
AsuHPI	GGTGA	1 cut(s)	259
BaeGI	GKGCMC	1 cut(s)	24
BanI	GGYRCC	1 cut(s)	68
Bbv12I	GWGCWC	1 cut(s)	24
BbvI	GCAGC	1 cut(s)	212
BccI	CCATC	4 cut(s)	355, 362, 385, 391
BclI	TGATCA	2 cut(s)	264, 316
BcnI	CCSGG	3 cut(s)	118, 271, 427
BfaI	CTAG	1 cut(s)	303
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
Bme1390I	CCNGG	3 cut(s)	118, 271, 427
BmiI	GGNNCC	2 cut(s)	70, 324
BmrFI	CCNGG	3 cut(s)	118, 271, 427
BmsI	GCATC	2 cut(s)	187, 212
BpmI	CTGGAG	2 cut(s)	205, 306
BpuMI	CCSGG	3 cut(s)	118, 271, 427
BsaAI	YACGTR	1 cut(s)	351
BsaJI	CCNNGG	2 cut(s)	7, 425
BsaWI	WCCGGW	1 cut(s)	328
BsaXI	ACNNNNNCTCC	2 cut(s)	279, 309
Bse1I	ACTGG	2 cut(s)	188, 289
Bse3DI	GCAATG	2 cut(s)	388, 426
BseDI	CCNNGG	2 cut(s)	7, 425
BseGI	GGATG	2 cut(s)	202, 402
BseMI	GCAATG	2 cut(s)	388, 426
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	2 cut(s)	188, 289
BseSI	GKGCMC	1 cut(s)	24
BseXI	GCAGC	1 cut(s)	212
BshNI	GGYRCC	1 cut(s)	68
BsiHKAI	GWGCWC	1 cut(s)	24
BsiSI	CCGG	4 cut(s)	118, 270, 329, 427
BslFI	GGGAC	2 cut(s)	100, 116
BsmFI	GGGAC	2 cut(s)	100, 116
BsmI	GAATGC	1 cut(s)	169
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp143I	GATC	2 cut(s)	264, 316
Bsp19I	CCATGG	1 cut(s)	7
BspACI	CCGC	4 cut(s)	99, 152, 238, 307
BspCNI	CTCAG	1 cut(s)	250
BspLI	GGNNCC	2 cut(s)	70, 324
BspT107I	GGYRCC	1 cut(s)	68
BsrDI	GCAATG	2 cut(s)	388, 426
BsrI	ACTGG	2 cut(s)	188, 289
BssECI	CCNNGG	2 cut(s)	7, 425
BssMI	GATC	2 cut(s)	264, 316
BssT1I	CCWWGG	1 cut(s)	7
Bst4CI	ACNGT	2 cut(s)	295, 358
BstAPI	GCANNNNNTGC	1 cut(s)	206
BstBAI	YACGTR	1 cut(s)	351
BstC8I	GCNNGC	3 cut(s)	24, 43, 47
BstDEI	CTNAG	1 cut(s)	258
BstDSI	CCRYGG	1 cut(s)	7
BstF5I	GGATG	2 cut(s)	202, 402
BstHHI	GCGC	1 cut(s)	432
BstKTI	GATC	2 cut(s)	267, 319
BstMBI	GATC	2 cut(s)	264, 316
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstNSI	RCATGY	1 cut(s)	88
BstSCI	CCNGG	3 cut(s)	116, 269, 425
BstSLI	GKGCMC	1 cut(s)	24
BstV1I	GCAGC	1 cut(s)	212
BtgI	CCRYGG	1 cut(s)	7
BtsCI	GGATG	2 cut(s)	202, 402
Cac8I	GCNNGC	3 cut(s)	24, 43, 47
CaiI	CAGNNNCTG	1 cut(s)	206
CfoI	GCGC	1 cut(s)	432
Csp6I	GTAC	1 cut(s)	181
CspCI	CAANNNNNGTGG	2 cut(s)	315, 350
CviAII	CATG	3 cut(s)	8, 85, 169
CviJI	RGCY	2 cut(s)	41, 257
CviKI_1	RGCY	2 cut(s)	41, 257
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	1 cut(s)	258
DpnI	GATC	2 cut(s)	266, 318
DpnII	GATC	2 cut(s)	264, 316
Eco130I	CCWWGG	1 cut(s)	7
EcoT14I	CCWWGG	1 cut(s)	7
ErhI	CCWWGG	1 cut(s)	7
FaeI	CATG	3 cut(s)	11, 88, 172
FaiI	YATR	7 cut(s)	9, 86, 90, 135, 137, 170, 246
FaqI	GGGAC	2 cut(s)	100, 116
FatI	CATG	3 cut(s)	7, 84, 168
FauI	CCCGC	1 cut(s)	92
FbaI	TGATCA	2 cut(s)	264, 316
Fnu4HI	GCNGC	1 cut(s)	201
FokI	GGATG	2 cut(s)	209, 409
Fsp4HI	GCNGC	1 cut(s)	201
FspBI	CTAG	1 cut(s)	303
GlaI	GCGC	1 cut(s)	431
GluI	GCNGC	1 cut(s)	201
GsuI	CTGGAG	2 cut(s)	205, 306
HapII	CCGG	4 cut(s)	118, 270, 329, 427
HhaI	GCGC	1 cut(s)	432
Hin1II	CATG	3 cut(s)	11, 88, 172
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HinfI	GANTC	1 cut(s)	113
HpaII	CCGG	4 cut(s)	118, 270, 329, 427
HphI	GGTGA	1 cut(s)	259
Hpy166II	GTNNAC	3 cut(s)	22, 82, 354
Hpy8I	GTNNAC	3 cut(s)	22, 82, 354
HpyCH4III	ACNGT	2 cut(s)	295, 358
HpyCH4IV	ACGT	3 cut(s)	105, 242, 350
HpyCH4V	TGCA	5 cut(s)	22, 49, 200, 278, 471
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
HpyF3I	CTNAG	1 cut(s)	258
HpySE526I	ACGT	3 cut(s)	105, 242, 350
Hsp92II	CATG	3 cut(s)	11, 88, 172
HspAI	GCGC	1 cut(s)	430
Ksp22I	TGATCA	2 cut(s)	264, 316
Kzo9I	GATC	2 cut(s)	264, 316
LpnPI	CCDG	9 cut(s)	27, 131, 169, 270, 283, 305, 342, 440, 447
Lsp1109I	GCAGC	1 cut(s)	212
LweI	GCATC	2 cut(s)	187, 212
MaeI	CTAG	1 cut(s)	303
MaeII	ACGT	3 cut(s)	105, 242, 350
MaeIII	GTNAC	2 cut(s)	247, 295
MalI	GATC	2 cut(s)	266, 318
MboI	GATC	2 cut(s)	264, 316
MboII	GAAGA	2 cut(s)	238, 349
MhlI	GDGCHC	1 cut(s)	24
MlyI	GAGTC	1 cut(s)	122
MmeI	TCCRAC	1 cut(s)	140
MnlI	CCTC	4 cut(s)	82, 150, 396, 409
MslI	CAYNNNNRTG	2 cut(s)	54, 147
MspI	CCGG	4 cut(s)	118, 270, 329, 427
MspR9I	CCNGG	3 cut(s)	118, 271, 427
Mva1269I	GAATGC	1 cut(s)	169
MwoI	GCNNNNNNNGC	1 cut(s)	206
NciI	CCSGG	3 cut(s)	118, 271, 427
NcoI	CCATGG	1 cut(s)	7
NdeII	GATC	2 cut(s)	264, 316
NlaIII	CATG	3 cut(s)	11, 88, 172
NlaIV	GGNNCC	2 cut(s)	70, 324
NmuCI	GTSAC	1 cut(s)	247
NspI	RCATGY	1 cut(s)	88
PciI	ACATGT	1 cut(s)	84
PctI	GAATGC	1 cut(s)	169
PfoI	TCCNGGA	1 cut(s)	116
PkrI	GCNGC	1 cut(s)	202
PleI	GAGTC	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	121
Ppu21I	YACGTR	1 cut(s)	351
PscI	ACATGT	1 cut(s)	84
PspN4I	GGNNCC	2 cut(s)	70, 324
PstNI	CAGNNNCTG	1 cut(s)	206
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
RseI	CAYNNNNRTG	2 cut(s)	54, 147
SatI	GCNGC	1 cut(s)	201
Sau3AI	GATC	2 cut(s)	264, 316
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	3 cut(s)	118, 271, 427
SduI	GDGCHC	1 cut(s)	24
SetI	ASST	6 cut(s)	74, 108, 245, 324, 353, 481
SfaNI	GCATC	2 cut(s)	187, 212
SmiMI	CAYNNNNRTG	2 cut(s)	54, 147
SsiI	CCGC	4 cut(s)	99, 152, 238, 307
SspMI	CTAG	1 cut(s)	303
StyD4I	CCNGG	3 cut(s)	116, 269, 425
StyI	CCWWGG	1 cut(s)	7
TaaI	ACNGT	2 cut(s)	295, 358
TaiI	ACGT	3 cut(s)	108, 245, 353
TaqI	TCGA	1 cut(s)	414
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	1 cut(s)	200
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	1 cut(s)	17
VneI	GTGCAC	1 cut(s)	20
XceI	RCATGY	1 cut(s)	88
XspI	CTAG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.