Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0015465

Physical Location & Seq

Genomic Coordinates Forward (+)

1649156 .. 1650502

Gene Structure 1347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G017700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGAATTGTGATGTGTTGGTTGGTACCTCGTTAGTTGACATGTATGCGAAATGCGGGGATGTTTTTGAGTCCCGGAAAGTGTTTGATTATATGCCTGAGAAAAATGTGGTGGCTTGGAATGCAATAATTGGAGGGTACTTGAGAAGTGGGGATACAGCGTCTGCAGTTTTCTTGTTTGAGAAGATGTCAATGCGGACATCTGTGACTTGGATTGAGATGATCGCTGGGTTTGCGCGAAGTGGGGACACTGTGACTGCTAGGCGGTTCTTTGATCAGGTTCCACCTGAGTTGAAGAACGTGGTTACGTGGACTGTGATGGTTGAGGGGTATTGTAGCAATGGGAAGATGGAGGCAGCAAGGGAAGTTTTTGAGGCAATGCCACAGCGCAATTTCTTTGTGTGGTCATCAATGATTTCCGGGTATTGCAAGAAAGGTGATGTTAGGGAGGCCAAGTTCATCTTTGATAGAATCCCAGTCCGGAACTTGGTGAACTGGAATTCTTTGATATCCGGGTATGCACAAAATGGATTTTCTGAGGAGGCTTTGAAAGCATTTGGGAAGATGCAAGCAGAAGGCTTTGAGCCAGATGAAGTTACTGTTGTGAGCGTTTTATCTGCATGTGCTCAGTCTGGGCTTTTAGATGTTGGCAAGAATATACACGATATCTTAGGTCATAAAAGGATAAAGCTTAGTCAGATTGTTCTGAATGCACTTGTAGACATGTACGCAAAATGTGGTGATTTGGTCAATGCAAGGTTGATCTTTGAGGGGATGACTGAGAGGAACAGTGCCTGTTGGAATGCTATGATTTCAGGTCTGGCCATTCATGGACAGTGCAAGGAGGCTCTTGAACTATTTCACAGAATGGAAGATTCAAATGAAAGGCCTGATGACATAACCTTTATTTCTGTTCTGTCGGCTTGTGCGCATGGAGGTTTAGTGGATGAAGGCATAGAAACTTTCTCCAAGATGGAGAAATATGGTTTGGCAACAGGGATTAAACATTATGGATGCCTGGTTGACCTTTTGGGACGGGCAGGAAGATTAAGAGAGGCTTATGCTTTAATCAAGAGAATGCCAATCAAACCCAATGGCATGGTTTGGGGGGCTATGCTGGGGGCTTGCCGGATTTATATGGATATGGAGATGACTGAACAGGTAGTAAAGGATATTGGCACCCTAGATTCAAATATTGGGTCGGGTGATAATTTACACTATGTGCTTCTGTCAAATATTTATGCTGCTTCCGATAGATGGGAGACGGCTGAAAGGACAAGGATTGCCATGGTAAATGAAGGCTTTCAAAAGACACCTGCTCACAGTGCATTTGTGACCAGCGGCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

449

Amino Acids

49.74

Weight (kDa)

5.74

Isoelectric Point (pI)

42.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015465)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21470
fragaria_vesca	FvH4_2g14800 FvH4_7g25011
malus_domestica	MD05G1012400.v1.1
prunus_persica	Prupe.8G017700_v2.0.a1
pyrus_communis	pycom05g00720
rosa_chinensis	RchiOBHm_Chr6g0277371
rosa_laevigata	RLG00000013306 RLG00000029733
rosa_multiflora	Rmu_co8197674.1_g000001 Rmu_sc0000030.1_g000011
rosa_roxburghii	Rroxscaffold_7G00191390
rosa_rugosa	Rorug01G0093200 Rorug06G0107700
rosa_samantha	Rh6AG218600 Rh6DG215300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1321
Acc16I	TGCGCA	1 cut(s)	927
Acc36I	ACCTGC	1 cut(s)	1321
Acc65I	GGTACC	1 cut(s)	23
AccB1I	GGYRCC	2 cut(s)	23, 1175
AccI	GTMKAC	1 cut(s)	717
AccII	CGCG	1 cut(s)	235
AccIII	TCCGGA	1 cut(s)	477
AciI	CCGC	4 cut(s)	54, 193, 262, 1338
AcoI	YGGCCR	1 cut(s)	819
AcsI	RAATTY	1 cut(s)	496
AdeI	CACNNNGTG	1 cut(s)	1219
AfaI	GTAC	3 cut(s)	25, 137, 725
AfiI	CCNNNNNNNGG	2 cut(s)	484, 1254
AflIII	ACRYGT	2 cut(s)	39, 720
AgsI	TTSAA	6 cut(s)	292, 547, 851, 876, 1188, 1304
AjnI	CCWGG	1 cut(s)	1014
AjuI	GAANNNNNNNTTGG	2 cut(s)	968, 1000
AloI	GAACNNNNNNTCC	2 cut(s)	437, 469
AluBI	AGCT	1 cut(s)	688
AluI	AGCT	1 cut(s)	688
Alw21I	GWGCWC	1 cut(s)	625
Alw26I	GTCTC	1 cut(s)	1253
AlwNI	CAGNNNCTG	2 cut(s)	161, 792
Aor13HI	TCCGGA	1 cut(s)	477
AoxI	GGCC	3 cut(s)	447, 819, 884
ApeKI	GCWGC	2 cut(s)	353, 1241
ApoI	RAATTY	1 cut(s)	496
ArsI	GACNNNNNNTTYG	2 cut(s)	1181, 1213
Asp700I	GAANNNNTTC	2 cut(s)	855, 1299
Asp718I	GGTACC	1 cut(s)	23
AspLEI	GCGC	3 cut(s)	235, 387, 928
AsuC2I	CCSGG	3 cut(s)	73, 418, 511
AsuHPI	GGTGA	4 cut(s)	446, 499, 749, 1214
BalI	TGGCCA	1 cut(s)	821
BanI	GGYRCC	2 cut(s)	23, 1175
BarI	GAAGNNNNNNTAC	2 cut(s)	136, 168
Bbv12I	GWGCWC	1 cut(s)	625
BbvI	GCAGC	2 cut(s)	365, 1228
BccI	CCATC	4 cut(s)	310, 340, 964, 1248
BceAI	ACGGC	1 cut(s)	1278
BciT130I	CCWGG	1 cut(s)	1016
BciVI	GTATCC	1 cut(s)	145
BclI	TGATCA	1 cut(s)	271
BcnI	CCSGG	3 cut(s)	73, 418, 511
BcoDI	GTCTC	1 cut(s)	1253
BfaI	CTAG	2 cut(s)	258, 1181
BfmI	CTRYAG	1 cut(s)	162
BfuAI	ACCTGC	1 cut(s)	1321
BfuI	GTATCC	1 cut(s)	145
BisI	GCNGC	3 cut(s)	354, 1242, 1339
BlsI	GCNGC	3 cut(s)	355, 1243, 1340
Bme1390I	CCNGG	4 cut(s)	73, 418, 511, 1016
BmiI	GGNNCC	3 cut(s)	25, 279, 1177
BmrFI	CCNGG	4 cut(s)	73, 418, 511, 1016
BmrI	ACTGGG	1 cut(s)	467
BmsI	GCATC	2 cut(s)	552, 1001
BmuI	ACTGGG	1 cut(s)	467
BpuEI	CTTGAG	1 cut(s)	160
BpuMI	CCSGG	3 cut(s)	73, 418, 511
BsaAI	YACGTR	1 cut(s)	306
BsaJI	CCNNGG	1 cut(s)	1284
BsaWI	WCCGGW	1 cut(s)	477
BsaXI	ACNNNNNCTCC	4 cut(s)	437, 467, 924, 954
Bsc4I	CCNNNNNNNGG	2 cut(s)	484, 1254
Bse1I	ACTGG	2 cut(s)	473, 497
Bse3DI	GCAATG	2 cut(s)	343, 381
BseAI	TCCGGA	1 cut(s)	477
BseBI	CCWGG	1 cut(s)	1016
BseDI	CCNNGG	1 cut(s)	1284
BseGI	GGATG	4 cut(s)	64, 777, 949, 1016
BseLI	CCNNNNNNNGG	2 cut(s)	484, 1254
BseMI	GCAATG	2 cut(s)	343, 381
BseMII	CTCAG	5 cut(s)	87, 276, 525, 638, 768
BseNI	ACTGG	2 cut(s)	473, 497
BseRI	GAGGAG	1 cut(s)	551
BseXI	GCAGC	2 cut(s)	365, 1228
BseYI	CCCAGC	2 cut(s)	224, 1114
Bsh1236I	CGCG	1 cut(s)	235
BshFI	GGCC	3 cut(s)	449, 821, 886
BshNI	GGYRCC	2 cut(s)	23, 1175
BsiHKAI	GWGCWC	1 cut(s)	625
BsiSI	CCGG	5 cut(s)	73, 417, 478, 510, 1126
BslFI	GGGAC	3 cut(s)	55, 257, 1044
BslI	CCNNNNNNNGG	2 cut(s)	484, 1254
BsmAI	GTCTC	1 cut(s)	1253
BsmBI	CGTCTC	1 cut(s)	1253
BsmFI	GGGAC	3 cut(s)	55, 257, 1044
BsmI	GAATGC	4 cut(s)	124, 712, 805, 1080
BsnI	GGCC	3 cut(s)	449, 821, 886
Bsp1286I	GDGCHC	1 cut(s)	625
Bsp13I	TCCGGA	1 cut(s)	477
Bsp143I	GATC	3 cut(s)	219, 271, 759
Bsp19I	CCATGG	1 cut(s)	1284
BspACI	CCGC	4 cut(s)	54, 193, 262, 1338
BspANI	GGCC	3 cut(s)	449, 821, 886
BspCNI	CTCAG	5 cut(s)	88, 277, 526, 637, 769
BspEI	TCCGGA	1 cut(s)	477
BspFNI	CGCG	1 cut(s)	235
BspLI	GGNNCC	3 cut(s)	25, 279, 1177
BspMAI	CTGCAG	1 cut(s)	166
BspMI	ACCTGC	1 cut(s)	1321
BspT107I	GGYRCC	2 cut(s)	23, 1175
BsrDI	GCAATG	2 cut(s)	343, 381
BsrI	ACTGG	2 cut(s)	473, 497
BssECI	CCNNGG	1 cut(s)	1284
BssMI	GATC	3 cut(s)	219, 271, 759
BssT1I	CCWWGG	1 cut(s)	1284
Bst2UI	CCWGG	1 cut(s)	1016
Bst4CI	ACNGT	6 cut(s)	250, 313, 598, 788, 834, 1322
BstBAI	YACGTR	1 cut(s)	306
BstC8I	GCNNGC	2 cut(s)	567, 1123
BstDEI	CTNAG	7 cut(s)	96, 285, 534, 624, 667, 689, 777
BstDSI	CCRYGG	1 cut(s)	1284
BstF5I	GGATG	4 cut(s)	64, 777, 949, 1016
BstFNI	CGCG	1 cut(s)	235
BstHHI	GCGC	3 cut(s)	235, 387, 928
BstKTI	GATC	3 cut(s)	222, 274, 762
BstMAI	GTCTC	1 cut(s)	1253
BstMBI	GATC	3 cut(s)	219, 271, 759
BstMWI	GCNNNNNNNGC	4 cut(s)	119, 230, 548, 1322
BstNI	CCWGG	1 cut(s)	1016
BstNSI	RCATGY	3 cut(s)	43, 621, 724
BstSCI	CCNGG	4 cut(s)	71, 416, 509, 1014
BstSFI	CTRYAG	1 cut(s)	162
BstUI	CGCG	1 cut(s)	235
BstV1I	GCAGC	2 cut(s)	365, 1228
BstXI	CCANNNNNNTGG	1 cut(s)	1096
BsuI	GTATCC	1 cut(s)	145
BsuRI	GGCC	3 cut(s)	449, 821, 886
BtgI	CCRYGG	1 cut(s)	1284
BtsCI	GGATG	4 cut(s)	64, 777, 949, 1016
BtsIMutI	CAGTG	4 cut(s)	246, 793, 839, 1327
BveI	ACCTGC	1 cut(s)	1321
Cac8I	GCNNGC	2 cut(s)	567, 1123
CaiI	CAGNNNCTG	2 cut(s)	161, 792
CfoI	GCGC	3 cut(s)	235, 387, 928
CseI	GACGC	1 cut(s)	147
Csp6I	GTAC	3 cut(s)	24, 136, 724
CspCI	CAANNNNNGTGG	2 cut(s)	270, 305
CviAII	CATG	7 cut(s)	40, 618, 721, 827, 929, 1096, 1285
CviQI	GTAC	3 cut(s)	24, 136, 724
DdeI	CTNAG	7 cut(s)	96, 285, 534, 624, 667, 689, 777
DpnI	GATC	3 cut(s)	221, 273, 761
DpnII	GATC	3 cut(s)	219, 271, 759
DraIII	CACNNNGTG	1 cut(s)	1219
EaeI	YGGCCR	1 cut(s)	819
Eco130I	CCWWGG	1 cut(s)	1284
Eco147I	AGGCCT	1 cut(s)	886
Eco32I	GATATC	2 cut(s)	507, 664
EcoRI	GAATTC	1 cut(s)	496
EcoRII	CCWGG	1 cut(s)	1014
EcoRV	GATATC	2 cut(s)	507, 664
EcoT14I	CCWWGG	1 cut(s)	1284
ErhI	CCWWGG	1 cut(s)	1284
Esp3I	CGTCTC	1 cut(s)	1253
FaeI	CATG	7 cut(s)	43, 621, 724, 830, 932, 1099, 1288
FalI	AAGNNNNNCTT	4 cut(s)	443, 475, 1039, 1071
FaqI	GGGAC	3 cut(s)	55, 257, 1044
FatI	CATG	7 cut(s)	39, 617, 720, 826, 928, 1095, 1284
FauI	CCCGC	1 cut(s)	47
FbaI	TGATCA	1 cut(s)	271
FblI	GTMKAC	1 cut(s)	717
Fnu4HI	GCNGC	3 cut(s)	354, 1242, 1339
FokI	GGATG	4 cut(s)	71, 784, 956, 1023
Fsp4HI	GCNGC	3 cut(s)	354, 1242, 1339
FspAI	RTGCGCAY	1 cut(s)	927
FspBI	CTAG	2 cut(s)	258, 1181
FspI	TGCGCA	1 cut(s)	927
GlaI	GCGC	3 cut(s)	234, 386, 927
GluI	GCNGC	3 cut(s)	354, 1242, 1339
GsaI	CCCAGC	2 cut(s)	228, 1118
HaeIII	GGCC	3 cut(s)	449, 821, 886
HapII	CCGG	5 cut(s)	73, 417, 478, 510, 1126
HgaI	GACGC	1 cut(s)	147
HhaI	GCGC	3 cut(s)	235, 387, 928
Hin1II	CATG	7 cut(s)	43, 621, 724, 830, 932, 1099, 1288
Hin6I	GCGC	3 cut(s)	233, 385, 926
HinP1I	GCGC	3 cut(s)	233, 385, 926
HincII	GTYRAC	2 cut(s)	37, 1021
HindII	GTYRAC	2 cut(s)	37, 1021
HindIII	AAGCTT	1 cut(s)	686
HinfI	GANTC	4 cut(s)	68, 468, 872, 1184
HpaII	CCGG	5 cut(s)	73, 417, 478, 510, 1126
HphI	GGTGA	4 cut(s)	446, 499, 749, 1214
Hpy166II	GTNNAC	5 cut(s)	37, 309, 490, 718, 1021
Hpy188I	TCNGA	4 cut(s)	535, 696, 705, 1249
Hpy188III	TCNNGA	3 cut(s)	478, 848, 1069
Hpy8I	GTNNAC	5 cut(s)	37, 309, 490, 718, 1021
HpyAV	CCTTC	3 cut(s)	566, 941, 1289
HpyCH4III	ACNGT	6 cut(s)	250, 313, 598, 788, 834, 1322
HpyCH4IV	ACGT	2 cut(s)	297, 305
HpyF10VI	GCNNNNNNNGC	4 cut(s)	119, 230, 548, 1322
HpyF3I	CTNAG	7 cut(s)	96, 285, 534, 624, 667, 689, 777
HpySE526I	ACGT	2 cut(s)	297, 305
Hsp92II	CATG	7 cut(s)	43, 621, 724, 830, 932, 1099, 1288
HspAI	GCGC	3 cut(s)	233, 385, 926
Kpn2I	TCCGGA	1 cut(s)	477
KpnI	GGTACC	1 cut(s)	27
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	3 cut(s)	219, 271, 759
Lsp1109I	GCAGC	2 cut(s)	365, 1228
LweI	GCATC	2 cut(s)	552, 1001
MaeI	CTAG	2 cut(s)	258, 1181
MaeII	ACGT	2 cut(s)	297, 305
MaeIII	GTNAC	5 cut(s)	202, 250, 301, 592, 1330
MalI	GATC	3 cut(s)	221, 273, 761
MboI	GATC	3 cut(s)	219, 271, 759
MboII	GAAGA	6 cut(s)	193, 304, 355, 571, 881, 1053
MhlI	GDGCHC	1 cut(s)	625
MlsI	TGGCCA	1 cut(s)	821
MluCI	AATT	5 cut(s)	4, 126, 388, 496, 1207
MluNI	TGGCCA	1 cut(s)	821
MlyI	GAGTC	1 cut(s)	77
MmeI	TCCRAC	1 cut(s)	776
Mox20I	TGGCCA	1 cut(s)	821
MroI	TCCGGA	1 cut(s)	477
MroXI	GAANNNNTTC	2 cut(s)	855, 1299
MscI	TGGCCA	1 cut(s)	821
MseI	TTAA	3 cut(s)	999, 1046, 1064
Msp20I	TGGCCA	1 cut(s)	821
MspA1I	CMGCKG	1 cut(s)	1338
MspI	CCGG	5 cut(s)	73, 417, 478, 510, 1126
MspR9I	CCNGG	4 cut(s)	73, 418, 511, 1016
Mva1269I	GAATGC	4 cut(s)	124, 712, 805, 1080
MvaI	CCWGG	1 cut(s)	1016
MvnI	CGCG	1 cut(s)	235
MwoI	GCNNNNNNNGC	4 cut(s)	119, 230, 548, 1322
NciI	CCSGG	3 cut(s)	73, 418, 511
NcoI	CCATGG	1 cut(s)	1284
NdeII	GATC	3 cut(s)	219, 271, 759
NlaIII	CATG	7 cut(s)	43, 621, 724, 830, 932, 1099, 1288
NlaIV	GGNNCC	3 cut(s)	25, 279, 1177
NmuCI	GTSAC	3 cut(s)	202, 250, 1330
NsbI	TGCGCA	1 cut(s)	927
NspI	RCATGY	3 cut(s)	43, 621, 724
PaqCI	CACCTGC	1 cut(s)	1321
PceI	AGGCCT	1 cut(s)	886
PciI	ACATGT	2 cut(s)	39, 720
PctI	GAATGC	4 cut(s)	124, 712, 805, 1080
PdmI	GAANNNNTTC	2 cut(s)	855, 1299
PfeI	GAWTC	3 cut(s)	468, 872, 1184
PfoI	TCCNGGA	1 cut(s)	71
PkrI	GCNGC	3 cut(s)	355, 1243, 1340
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
Ppu21I	YACGTR	1 cut(s)	306
PscI	ACATGT	2 cut(s)	39, 720
Psp6I	CCWGG	1 cut(s)	1014
PspFI	CCCAGC	2 cut(s)	224, 1114
PspGI	CCWGG	1 cut(s)	1014
PspN4I	GGNNCC	3 cut(s)	25, 279, 1177
PstI	CTGCAG	1 cut(s)	166
PstNI	CAGNNNCTG	2 cut(s)	161, 792
RsaI	GTAC	3 cut(s)	25, 137, 725
RsaNI	GTAC	3 cut(s)	24, 136, 724
SaqAI	TTAA	3 cut(s)	999, 1046, 1064
SatI	GCNGC	3 cut(s)	354, 1242, 1339
Sau3AI	GATC	3 cut(s)	219, 271, 759
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	4 cut(s)	73, 418, 511, 1016
SduI	GDGCHC	1 cut(s)	625
SfaNI	GCATC	2 cut(s)	552, 1001
SfcI	CTRYAG	1 cut(s)	162
SmlI	CTYRAG	1 cut(s)	139
SmoI	CTYRAG	1 cut(s)	139
Sse9I	AATT	5 cut(s)	4, 126, 388, 496, 1207
SseBI	AGGCCT	1 cut(s)	886
SsiI	CCGC	4 cut(s)	54, 193, 262, 1338
SspI	AATATT	2 cut(s)	1192, 1234
SspMI	CTAG	2 cut(s)	258, 1181
StuI	AGGCCT	1 cut(s)	886
StyD4I	CCNGG	4 cut(s)	71, 416, 509, 1014
StyI	CCWWGG	1 cut(s)	1284
TaaI	ACNGT	6 cut(s)	250, 313, 598, 788, 834, 1322
TaiI	ACGT	2 cut(s)	300, 308
TasI	AATT	5 cut(s)	4, 126, 388, 496, 1207
TauI	GCSGC	1 cut(s)	1341
TfiI	GAWTC	3 cut(s)	468, 872, 1184
Tru1I	TTAA	3 cut(s)	999, 1046, 1064
Tru9I	TTAA	3 cut(s)	999, 1046, 1064
TscAI	CASTG	4 cut(s)	253, 793, 839, 1327
TseFI	GTSAC	3 cut(s)	202, 250, 1330
TseI	GCWGC	2 cut(s)	353, 1241
Tsp45I	GTSAC	3 cut(s)	202, 250, 1330
TspDTI	ATGAA	7 cut(s)	17, 445, 603, 815, 894, 960, 1308
TspRI	CASTG	4 cut(s)	253, 793, 839, 1327
XapI	RAATTY	1 cut(s)	496
XceI	RCATGY	3 cut(s)	43, 621, 724
XmiI	GTMKAC	1 cut(s)	717
XmnI	GAANNNNTTC	2 cut(s)	855, 1299
XspI	CTAG	2 cut(s)	258, 1181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.