Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G21470 |
| fragaria_vesca | FvH4_2g14800 FvH4_7g25011 |
| malus_domestica | MD05G1012400.v1.1 |
| prunus_persica | Prupe.8G017700_v2.0.a1 |
| pyrus_communis | pycom05g00720 |
| rosa_chinensis | RchiOBHm_Chr6g0277371 |
| rosa_laevigata | RLG00000013306 RLG00000029733 |
| rosa_multiflora | Rmu_co8197674.1_g000001 Rmu_sc0000030.1_g000011 |
| rosa_roxburghii | Rroxscaffold_7G00191390 |
| rosa_rugosa | Rorug01G0093200 Rorug06G0107700 |
| rosa_samantha | Rh6AG218600 Rh6DG215300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 146 |
| AccII | CGCG | 1 cut(s) | 365 |
| AciI | CCGC | 3 cut(s) | 174, 372, 490 |
| AclWI | GGATC | 1 cut(s) | 175 |
| AcsI | RAATTY | 2 cut(s) | 201, 322 |
| AcyI | GRCGYC | 1 cut(s) | 208 |
| AfaI | GTAC | 3 cut(s) | 77, 194, 362 |
| AfeI | AGCGCT | 1 cut(s) | 183 |
| AflIII | ACRYGT | 1 cut(s) | 357 |
| AjiI | CACGTC | 1 cut(s) | 345 |
| Alw26I | GTCTC | 1 cut(s) | 446 |
| AlwI | GGATC | 1 cut(s) | 175 |
| Aor51HI | AGCGCT | 1 cut(s) | 183 |
| AoxI | GGCC | 1 cut(s) | 252 |
| ApoI | RAATTY | 2 cut(s) | 201, 322 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 193, 225 |
| AspLEI | GCGC | 1 cut(s) | 184 |
| AsuC2I | CCSGG | 1 cut(s) | 391 |
| AsuHPI | GGTGA | 2 cut(s) | 146, 162 |
| BclI | TGATCA | 1 cut(s) | 480 |
| BcnI | CCSGG | 1 cut(s) | 391 |
| BcoDI | GTCTC | 1 cut(s) | 446 |
| BfaI | CTAG | 1 cut(s) | 467 |
| BfoI | RGCGCY | 1 cut(s) | 185 |
| Bme1390I | CCNGG | 1 cut(s) | 391 |
| BmgBI | CACGTC | 1 cut(s) | 345 |
| BmiI | GGNNCC | 1 cut(s) | 488 |
| BmrFI | CCNGG | 1 cut(s) | 391 |
| BpuEI | CTTGAG | 2 cut(s) | 147, 233 |
| BpuMI | CCSGG | 1 cut(s) | 391 |
| BsaHI | GRCGYC | 1 cut(s) | 208 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 443, 473 |
| Bse3DI | GCAATG | 1 cut(s) | 290 |
| BseMI | GCAATG | 1 cut(s) | 290 |
| BseMII | CTCAG | 1 cut(s) | 405 |
| BseRI | GAGGAG | 1 cut(s) | 27 |
| BsgI | GTGCAG | 1 cut(s) | 85 |
| Bsh1236I | CGCG | 1 cut(s) | 365 |
| BshFI | GGCC | 1 cut(s) | 254 |
| BsiSI | CCGG | 1 cut(s) | 391 |
| BslFI | GGGAC | 1 cut(s) | 373 |
| BsmAI | GTCTC | 1 cut(s) | 446 |
| BsmFI | GGGAC | 1 cut(s) | 373 |
| BsmI | GAATGC | 1 cut(s) | 442 |
| BsnI | GGCC | 1 cut(s) | 254 |
| Bsp1407I | TGTACA | 1 cut(s) | 192 |
| Bsp143I | GATC | 2 cut(s) | 167, 480 |
| BspACI | CCGC | 3 cut(s) | 174, 372, 490 |
| BspANI | GGCC | 1 cut(s) | 254 |
| BspCNI | CTCAG | 1 cut(s) | 406 |
| BspFNI | CGCG | 1 cut(s) | 365 |
| BspLI | GGNNCC | 1 cut(s) | 488 |
| BspPI | GGATC | 1 cut(s) | 175 |
| BsrDI | GCAATG | 1 cut(s) | 290 |
| BsrGI | TGTACA | 1 cut(s) | 192 |
| BssMI | GATC | 2 cut(s) | 167, 480 |
| BssNI | GRCGYC | 1 cut(s) | 208 |
| Bst4CI | ACNGT | 1 cut(s) | 459 |
| BstACI | GRCGYC | 1 cut(s) | 208 |
| BstAUI | TGTACA | 1 cut(s) | 192 |
| BstC8I | GCNNGC | 2 cut(s) | 297, 374 |
| BstDEI | CTNAG | 1 cut(s) | 414 |
| BstFNI | CGCG | 1 cut(s) | 365 |
| BstH2I | RGCGCY | 1 cut(s) | 185 |
| BstHHI | GCGC | 1 cut(s) | 184 |
| BstKTI | GATC | 2 cut(s) | 170, 483 |
| BstMAI | GTCTC | 1 cut(s) | 446 |
| BstMBI | GATC | 2 cut(s) | 167, 480 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 296 |
| BstNSI | RCATGY | 1 cut(s) | 361 |
| BstSCI | CCNGG | 1 cut(s) | 389 |
| BstUI | CGCG | 1 cut(s) | 365 |
| BsuRI | GGCC | 1 cut(s) | 254 |
| BtgZI | GCGATG | 1 cut(s) | 455 |
| BtrI | CACGTC | 1 cut(s) | 345 |
| BtsI | GCAGTG | 1 cut(s) | 28 |
| BtsIMutI | CAGTG | 2 cut(s) | 28, 455 |
| Cac8I | GCNNGC | 2 cut(s) | 297, 374 |
| CfoI | GCGC | 1 cut(s) | 184 |
| CseI | GACGC | 1 cut(s) | 197 |
| Csp6I | GTAC | 3 cut(s) | 76, 193, 361 |
| CviAII | CATG | 4 cut(s) | 17, 92, 358, 432 |
| CviJI | RGCY | 1 cut(s) | 254 |
| CviKI_1 | RGCY | 1 cut(s) | 254 |
| CviQI | GTAC | 3 cut(s) | 76, 193, 361 |
| DdeI | CTNAG | 1 cut(s) | 414 |
| DpnI | GATC | 2 cut(s) | 169, 482 |
| DpnII | GATC | 2 cut(s) | 167, 480 |
| Eco147I | AGGCCT | 1 cut(s) | 254 |
| Eco47III | AGCGCT | 1 cut(s) | 183 |
| EcoRI | GAATTC | 2 cut(s) | 201, 322 |
| FaeI | CATG | 4 cut(s) | 20, 95, 361, 435 |
| FaiI | YATR | 8 cut(s) | 18, 93, 146, 320, 359, 408, 410, 433 |
| FaqI | GGGAC | 1 cut(s) | 373 |
| FatI | CATG | 4 cut(s) | 16, 91, 357, 431 |
| FauI | CCCGC | 2 cut(s) | 181, 365 |
| FbaI | TGATCA | 1 cut(s) | 480 |
| FspBI | CTAG | 1 cut(s) | 467 |
| GlaI | GCGC | 1 cut(s) | 183 |
| HaeII | RGCGCY | 1 cut(s) | 185 |
| HaeIII | GGCC | 1 cut(s) | 254 |
| HapII | CCGG | 1 cut(s) | 391 |
| HgaI | GACGC | 1 cut(s) | 197 |
| HhaI | GCGC | 1 cut(s) | 184 |
| Hin1I | GRCGYC | 1 cut(s) | 208 |
| Hin1II | CATG | 4 cut(s) | 20, 95, 361, 435 |
| Hin6I | GCGC | 1 cut(s) | 182 |
| HinP1I | GCGC | 1 cut(s) | 182 |
| HincII | GTYRAC | 1 cut(s) | 355 |
| HindII | GTYRAC | 1 cut(s) | 355 |
| HinfI | GANTC | 6 cut(s) | 151, 216, 244, 302, 386, 473 |
| HpaII | CCGG | 1 cut(s) | 391 |
| HphI | GGTGA | 2 cut(s) | 146, 162 |
| Hpy166II | GTNNAC | 1 cut(s) | 355 |
| Hpy188I | TCNGA | 1 cut(s) | 328 |
| Hpy8I | GTNNAC | 1 cut(s) | 355 |
| HpyAV | CCTTC | 1 cut(s) | 280 |
| HpyCH4III | ACNGT | 1 cut(s) | 459 |
| HpyCH4IV | ACGT | 1 cut(s) | 344 |
| HpyCH4V | TGCA | 3 cut(s) | 102, 128, 295 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 296 |
| HpyF3I | CTNAG | 1 cut(s) | 414 |
| HpySE526I | ACGT | 1 cut(s) | 344 |
| Hsp92I | GRCGYC | 1 cut(s) | 208 |
| Hsp92II | CATG | 4 cut(s) | 20, 95, 361, 435 |
| HspAI | GCGC | 1 cut(s) | 182 |
| Ksp22I | TGATCA | 1 cut(s) | 480 |
| Kzo9I | GATC | 2 cut(s) | 167, 480 |
| LpnPI | CCDG | 8 cut(s) | 138, 203, 268, 300, 404, 426, 469, 478 |
| MaeI | CTAG | 1 cut(s) | 467 |
| MaeII | ACGT | 1 cut(s) | 344 |
| MaeIII | GTNAC | 3 cut(s) | 3, 152, 427 |
| MalI | GATC | 2 cut(s) | 169, 482 |
| MboI | GATC | 2 cut(s) | 167, 480 |
| MboII | GAAGA | 1 cut(s) | 227 |
| MluCI | AATT | 3 cut(s) | 130, 201, 322 |
| MlyI | GAGTC | 3 cut(s) | 160, 311, 395 |
| MnlI | CCTC | 5 cut(s) | 45, 48, 73, 89, 167 |
| MseI | TTAA | 1 cut(s) | 275 |
| MspI | CCGG | 1 cut(s) | 391 |
| MspR9I | CCNGG | 1 cut(s) | 391 |
| Mva1269I | GAATGC | 1 cut(s) | 442 |
| MvnI | CGCG | 1 cut(s) | 365 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 296 |
| NciI | CCSGG | 1 cut(s) | 391 |
| NdeII | GATC | 2 cut(s) | 167, 480 |
| NlaIII | CATG | 4 cut(s) | 20, 95, 361, 435 |
| NlaIV | GGNNCC | 1 cut(s) | 488 |
| NmeAIII | GCCGAG | 1 cut(s) | 325 |
| NmuCI | GTSAC | 3 cut(s) | 3, 152, 427 |
| NspI | RCATGY | 1 cut(s) | 361 |
| PceI | AGGCCT | 1 cut(s) | 254 |
| PciI | ACATGT | 1 cut(s) | 357 |
| PctI | GAATGC | 1 cut(s) | 442 |
| PfeI | GAWTC | 3 cut(s) | 216, 244, 473 |
| PfoI | TCCNGGA | 1 cut(s) | 389 |
| PleI | GAGTC | 3 cut(s) | 159, 310, 394 |
| PpsI | GAGTC | 3 cut(s) | 159, 310, 394 |
| PscI | ACATGT | 1 cut(s) | 357 |
| PsiI | TTATAA | 1 cut(s) | 146 |
| PspN4I | GGNNCC | 1 cut(s) | 488 |
| RsaI | GTAC | 3 cut(s) | 77, 194, 362 |
| RsaNI | GTAC | 3 cut(s) | 76, 193, 361 |
| SaqAI | TTAA | 1 cut(s) | 275 |
| Sau3AI | GATC | 2 cut(s) | 167, 480 |
| SchI | GAGTC | 3 cut(s) | 160, 311, 395 |
| ScrFI | CCNGG | 1 cut(s) | 391 |
| SetI | ASST | 4 cut(s) | 81, 159, 347, 488 |
| SmlI | CTYRAG | 2 cut(s) | 162, 248 |
| SmoI | CTYRAG | 2 cut(s) | 162, 248 |
| Sse9I | AATT | 3 cut(s) | 130, 201, 322 |
| SseBI | AGGCCT | 1 cut(s) | 254 |
| SsiI | CCGC | 3 cut(s) | 174, 372, 490 |
| SspMI | CTAG | 1 cut(s) | 467 |
| StuI | AGGCCT | 1 cut(s) | 254 |
| StyD4I | CCNGG | 1 cut(s) | 389 |
| TaaI | ACNGT | 1 cut(s) | 459 |
| TaiI | ACGT | 1 cut(s) | 347 |
| TasI | AATT | 3 cut(s) | 130, 201, 322 |
| TatI | WGTACW | 1 cut(s) | 192 |
| TfiI | GAWTC | 3 cut(s) | 216, 244, 473 |
| Tru1I | TTAA | 1 cut(s) | 275 |
| Tru9I | TTAA | 1 cut(s) | 275 |
| TscAI | CASTG | 2 cut(s) | 35, 462 |
| TseFI | GTSAC | 3 cut(s) | 3, 152, 427 |
| Tsp45I | GTSAC | 3 cut(s) | 3, 152, 427 |
| TspDTI | ATGAA | 1 cut(s) | 335 |
| TspGWI | ACGGA | 1 cut(s) | 125 |
| TspRI | CASTG | 2 cut(s) | 35, 462 |
| XapI | RAATTY | 2 cut(s) | 201, 322 |
| XceI | RCATGY | 1 cut(s) | 361 |
| XspI | CTAG | 1 cut(s) | 467 |