Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0015465

Physical Location & Seq

Genomic Coordinates Forward (+)

15181623 .. 15188986

Gene Structure 7364 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0093200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGAGACCGGTGTGTCCGTTCGTGAAAGCCGCTCGACCGGCGGAGCCAATCAAGAAAGAGAAAGAGCCGTCGTCGGCGGCGGCGACAGTCTCCCCAAAATGCCCCTTGGGTTACGATTCGCAGACCTTCAAGCTGGGCCCTCTGAGCTGCATGATATGCCAAGCCCTTCTCTTCGACTCTGCCAAATGCGTCCCTTGTTCTCATTCCTTCTGCAAAGTCTGTGTGTCGAGATTTAAGGACTGCCCGCTGTGTGGAGCTGACATTGAGAAGACGGAACCCAATTCCGAACTCCAGGGTTTGGTGGATCGCTTCATTGAGGGGCATGCCAGAATCAAGAGGTCTCATAATGCAGAGGAGGACACTAATACTAATACTAATACTAATAGTGAGAGCCACAATAAGAGAGTGATTTATGAAGACGTGTCTTTGGAGAGAGGTGCTTTCTTGGTGCAACAAGCTATGAGGGCATTCCGAGCCCAGAATATAGAAAGTGCCAAATCAAGGCTCAGTCTCTGTGCAGAAGATATCAGGGGTCAGTTGGAAACCATGGGCAACACTTCAGAGTTGTGTTCTCAGCTAGGAGCCGTTCTCGGAATGCTTGGCGACTGCTGTCGAGCAACAGGAGATGCTAGTTCTGCAGTCAATTATTTTGAAGAGAGCGTTGAATTTCTTTCAAAACTGCCAGGAAATGATCAGGAGATAACACATACACTCTCTATCTCACTTAATAAAATTGGAGATCTTAAATACTATGATGGAGACCTGCAAGCTGCAAGATCTTACTACTTCAAGTCACTGAATGTTCGACGCGATGCTGTCAAGCATGATCCAAATCCTAAATCCCAGATTCTGGATCTAGCTGTTTCATTTGCAAAAGTCGCTGATGTTGACAGAAGTCTAGGGAATGAGGATGTGGCAATTAATGAATTTCAAGAAGGAATAAAATTGTTGGAATCTTTGACATTAAATTCTGAAGACACTGGTCTTGAGCAACGGCGGCTTTCGGTGTTGGAGTTCCTTAAGAATCAAATTGTGGAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

347

Amino Acids

38.34

Weight (kDa)

5.56

Isoelectric Point (pI)

45.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015465)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21470
fragaria_vesca	FvH4_2g14800 FvH4_7g25011
malus_domestica	MD05G1012400.v1.1
prunus_persica	Prupe.8G017700_v2.0.a1
pyrus_communis	pycom05g00720
rosa_chinensis	RchiOBHm_Chr6g0277371
rosa_laevigata	RLG00000013306 RLG00000029733
rosa_multiflora	Rmu_co8197674.1_g000001 Rmu_sc0000030.1_g000011
rosa_roxburghii	Rroxscaffold_7G00191390
rosa_rugosa	Rorug01G0093200 Rorug06G0107700
rosa_samantha	Rh6AG218600 Rh6DG215300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	12
Acc36I	ACCTGC	1 cut(s)	771
AccB7I	CCANNNNNTGG	2 cut(s)	298, 850
AccBSI	CCGCTC	1 cut(s)	32
AccII	CGCG	1 cut(s)	810
AciI	CCGC	6 cut(s)	30, 41, 77, 80, 245, 997
AclWI	GGATC	3 cut(s)	312, 821, 861
AcsI	RAATTY	3 cut(s)	665, 926, 967
AcuI	CTGAAG	2 cut(s)	543, 993
AfiI	CCNNNNNNNGG	4 cut(s)	251, 298, 501, 850
AflII	CTTAAG	1 cut(s)	1019
AflIII	ACRYGT	1 cut(s)	420
AgeI	ACCGGT	1 cut(s)	7
AgsI	TTSAA	6 cut(s)	130, 653, 665, 675, 790, 932
AjiI	CACGTC	1 cut(s)	421
AjnI	CCWGG	2 cut(s)	291, 682
AluBI	AGCT	7 cut(s)	133, 147, 257, 458, 577, 770, 860
AluI	AGCT	7 cut(s)	133, 147, 257, 458, 577, 770, 860
Alw26I	GTCTC	4 cut(s)	94, 345, 515, 753
AlwI	GGATC	3 cut(s)	312, 821, 861
AlwNI	CAGNNNCTG	2 cut(s)	513, 850
AoxI	GGCC	1 cut(s)	136
ApaI	GGGCCC	1 cut(s)	140
ApeKI	GCWGC	2 cut(s)	147, 770
ApoI	RAATTY	3 cut(s)	665, 926, 967
AseI	ATTAAT	1 cut(s)	921
AsiGI	ACCGGT	1 cut(s)	7
AspS9I	GGNCC	2 cut(s)	136, 137
BaeGI	GKGCMC	1 cut(s)	140
BanII	GRGCYC	2 cut(s)	140, 478
BbsI	GAAGAC	3 cut(s)	275, 423, 981
BbvI	GCAGC	2 cut(s)	134, 757
BccI	CCATC	1 cut(s)	749
BceAI	ACGGC	3 cut(s)	52, 569, 1010
BciT130I	CCWGG	2 cut(s)	293, 684
BclI	TGATCA	1 cut(s)	691
BcoDI	GTCTC	4 cut(s)	94, 345, 515, 753
BfaI	CTAG	4 cut(s)	578, 630, 857, 899
BfmI	CTRYAG	1 cut(s)	636
BfrI	CTTAAG	1 cut(s)	1019
BfuAI	ACCTGC	1 cut(s)	771
BglII	AGATCT	2 cut(s)	739, 776
BisI	GCNGC	6 cut(s)	30, 78, 81, 148, 771, 998
BlsI	GCNGC	6 cut(s)	31, 79, 82, 149, 772, 999
Bme1390I	CCNGG	2 cut(s)	293, 684
BmgBI	CACGTC	1 cut(s)	421
BmgT120I	GGNCC	2 cut(s)	136, 137
BmiI	GGNNCC	4 cut(s)	45, 138, 276, 583
BmrFI	CCNGG	2 cut(s)	293, 684
BmsI	GCATC	2 cut(s)	616, 802
BoxI	GACNNNNGTC	3 cut(s)	609, 894, 981
BpiI	GAAGAC	3 cut(s)	275, 423, 981
BplI	GAGNNNNNCTC	2 cut(s)	573, 605
BpmI	CTGGAG	1 cut(s)	275
BpuEI	CTTGAG	1 cut(s)	1007
BsaBI	GATNNNNATC	1 cut(s)	831
BsaI	GGTCTC	2 cut(s)	345, 753
BsaJI	CCNNGG	3 cut(s)	105, 292, 546
BsaWI	WCCGGW	1 cut(s)	7
Bsc4I	CCNNNNNNNGG	4 cut(s)	251, 298, 501, 850
Bse118I	RCCGGY	2 cut(s)	7, 37
Bse1I	ACTGG	1 cut(s)	985
Bse8I	GATNNNNATC	1 cut(s)	831
BseBI	CCWGG	2 cut(s)	293, 684
BseDI	CCNNGG	3 cut(s)	105, 292, 546
BseGI	GGATG	1 cut(s)	916
BseJI	GATNNNNATC	1 cut(s)	831
BseLI	CCNNNNNNNGG	4 cut(s)	251, 298, 501, 850
BseMII	CTCAG	3 cut(s)	134, 520, 587
BseNI	ACTGG	1 cut(s)	985
BseRI	GAGGAG	1 cut(s)	368
BseSI	GKGCMC	1 cut(s)	140
BseXI	GCAGC	2 cut(s)	134, 757
BseYI	CCCAGC	1 cut(s)	133
BsgI	GTGCAG	1 cut(s)	537
Bsh1236I	CGCG	1 cut(s)	810
Bsh1285I	CGRYCG	1 cut(s)	38
BshFI	GGCC	1 cut(s)	138
BshTI	ACCGGT	1 cut(s)	7
BsiEI	CGRYCG	1 cut(s)	38
BsiSI	CCGG	2 cut(s)	8, 38
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	4 cut(s)	251, 298, 501, 850
BsmAI	GTCTC	4 cut(s)	94, 345, 515, 753
BsmFI	GGGAC	1 cut(s)	176
BsmI	GAATGC	2 cut(s)	467, 600
BsnI	GGCC	1 cut(s)	138
Bso31I	GGTCTC	2 cut(s)	345, 753
Bsp120I	GGGCCC	1 cut(s)	136
Bsp1286I	GDGCHC	2 cut(s)	140, 478
Bsp143I	GATC	6 cut(s)	304, 691, 739, 776, 826, 853
Bsp19I	CCATGG	1 cut(s)	546
BspACI	CCGC	6 cut(s)	30, 41, 77, 80, 245, 997
BspANI	GGCC	1 cut(s)	138
BspCNI	CTCAG	3 cut(s)	135, 519, 586
BspFNI	CGCG	1 cut(s)	810
BspLI	GGNNCC	4 cut(s)	45, 138, 276, 583
BspMAI	CTGCAG	1 cut(s)	640
BspMI	ACCTGC	1 cut(s)	771
BspPI	GGATC	3 cut(s)	312, 821, 861
BspTI	CTTAAG	1 cut(s)	1019
BspTNI	GGTCTC	2 cut(s)	345, 753
BsrBI	CCGCTC	1 cut(s)	32
BsrFI	RCCGGY	2 cut(s)	7, 37
BsrI	ACTGG	1 cut(s)	985
BssAI	RCCGGY	2 cut(s)	7, 37
BssECI	CCNNGG	3 cut(s)	105, 292, 546
BssMI	GATC	6 cut(s)	304, 691, 739, 776, 826, 853
BssT1I	CCWWGG	2 cut(s)	105, 546
Bst2UI	CCWGG	2 cut(s)	293, 684
Bst4CI	ACNGT	1 cut(s)	88
Bst6I	CTCTTC	2 cut(s)	176, 648
BstAFI	CTTAAG	1 cut(s)	1019
BstAPI	GCANNNNNTGC	1 cut(s)	156
BstC8I	GCNNGC	3 cut(s)	245, 324, 768
BstDEI	CTNAG	3 cut(s)	143, 506, 573
BstDSI	CCRYGG	1 cut(s)	546
BstF5I	GGATG	1 cut(s)	916
BstFNI	CGCG	1 cut(s)	810
BstKTI	GATC	6 cut(s)	307, 694, 742, 779, 829, 856
BstMAI	GTCTC	4 cut(s)	94, 345, 515, 753
BstMBI	GATC	6 cut(s)	304, 691, 739, 776, 826, 853
BstMCI	CGRYCG	1 cut(s)	38
BstMWI	GCNNNNNNNGC	8 cut(s)	38, 144, 156, 464, 473, 635, 878, 997
BstNI	CCWGG	2 cut(s)	293, 684
BstNSI	RCATGY	1 cut(s)	326
BstPAI	GACNNNNGTC	3 cut(s)	609, 894, 981
BstSCI	CCNGG	2 cut(s)	291, 682
BstSFI	CTRYAG	1 cut(s)	636
BstSLI	GKGCMC	1 cut(s)	140
BstUI	CGCG	1 cut(s)	810
BstV1I	GCAGC	2 cut(s)	134, 757
BstV2I	GAAGAC	3 cut(s)	275, 423, 981
BstX2I	RGATCY	3 cut(s)	739, 776, 853
BstYI	RGATCY	3 cut(s)	739, 776, 853
BsuRI	GGCC	1 cut(s)	138
BtgI	CCRYGG	1 cut(s)	546
BtgZI	GCGATG	1 cut(s)	825
BtrI	CACGTC	1 cut(s)	421
BtsCI	GGATG	1 cut(s)	916
BtsIMutI	CAGTG	2 cut(s)	794, 978
BveI	ACCTGC	1 cut(s)	771
Cac8I	GCNNGC	3 cut(s)	245, 324, 768
CaiI	CAGNNNCTG	2 cut(s)	513, 850
Cfr10I	RCCGGY	2 cut(s)	7, 37
Cfr13I	GGNCC	2 cut(s)	136, 137
CseI	GACGC	2 cut(s)	178, 816
CspAI	ACCGGT	1 cut(s)	7
CviAII	CATG	4 cut(s)	151, 323, 547, 824
DdeI	CTNAG	3 cut(s)	143, 506, 573
DpnI	GATC	6 cut(s)	306, 693, 741, 778, 828, 855
DpnII	GATC	6 cut(s)	304, 691, 739, 776, 826, 853
DrdI	GACNNNNNNGTC	1 cut(s)	12
DseDI	GACNNNNNNGTC	1 cut(s)	12
Eam1104I	CTCTTC	2 cut(s)	176, 648
EarI	CTCTTC	2 cut(s)	176, 648
EciI	GGCGGA	1 cut(s)	56
Eco130I	CCWWGG	2 cut(s)	105, 546
Eco24I	GRGCYC	2 cut(s)	140, 478
Eco31I	GGTCTC	2 cut(s)	345, 753
Eco32I	GATATC	1 cut(s)	526
Eco57I	CTGAAG	2 cut(s)	543, 993
EcoO109I	RGGNCCY	1 cut(s)	137
EcoRII	CCWGG	2 cut(s)	291, 682
EcoRV	GATATC	1 cut(s)	526
EcoT14I	CCWWGG	2 cut(s)	105, 546
EcoT38I	GRGCYC	2 cut(s)	140, 478
ErhI	CCWWGG	2 cut(s)	105, 546
FaeI	CATG	4 cut(s)	154, 326, 550, 827
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	4 cut(s)	150, 322, 546, 823
FauI	CCCGC	1 cut(s)	252
FbaI	TGATCA	1 cut(s)	691
Fnu4HI	GCNGC	6 cut(s)	30, 78, 81, 148, 771, 998
FokI	GGATG	1 cut(s)	923
FriOI	GRGCYC	2 cut(s)	140, 478
Fsp4HI	GCNGC	6 cut(s)	30, 78, 81, 148, 771, 998
FspBI	CTAG	4 cut(s)	578, 630, 857, 899
GluI	GCNGC	6 cut(s)	30, 78, 81, 148, 771, 998
GsaI	CCCAGC	1 cut(s)	137
GsuI	CTGGAG	1 cut(s)	275
HaeIII	GGCC	1 cut(s)	138
HapII	CCGG	2 cut(s)	8, 38
HgaI	GACGC	2 cut(s)	178, 816
Hin1II	CATG	4 cut(s)	154, 326, 550, 827
HincII	GTYRAC	1 cut(s)	889
HindII	GTYRAC	1 cut(s)	889
HinfI	GANTC	6 cut(s)	116, 176, 330, 847, 953, 1024
HpaII	CCGG	2 cut(s)	8, 38
Hpy166II	GTNNAC	1 cut(s)	889
Hpy188I	TCNGA	6 cut(s)	144, 286, 473, 562, 593, 973
Hpy188III	TCNNGA	8 cut(s)	22, 52, 228, 334, 695, 851, 932, 986
Hpy8I	GTNNAC	1 cut(s)	889
Hpy99I	CGWCG	3 cut(s)	73, 76, 810
HpyAV	CCTTC	4 cut(s)	136, 176, 217, 929
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4IV	ACGT	1 cut(s)	420
HpyCH4V	TGCA	9 cut(s)	150, 213, 350, 451, 518, 638, 766, 773, 872
HpyF10VI	GCNNNNNNNGC	8 cut(s)	38, 144, 156, 464, 473, 635, 878, 997
HpyF3I	CTNAG	3 cut(s)	143, 506, 573
HpySE526I	ACGT	1 cut(s)	420
Hsp92II	CATG	4 cut(s)	154, 326, 550, 827
Ksp22I	TGATCA	1 cut(s)	691
Kzo9I	GATC	6 cut(s)	304, 691, 739, 776, 826, 853
LmnI	GCTCC	3 cut(s)	43, 254, 581
Lsp1109I	GCAGC	2 cut(s)	134, 757
LweI	GCATC	2 cut(s)	616, 802
MaeI	CTAG	4 cut(s)	578, 630, 857, 899
MaeII	ACGT	1 cut(s)	420
MaeIII	GTNAC	2 cut(s)	110, 792
MalI	GATC	6 cut(s)	306, 693, 741, 778, 828, 855
MbiI	CCGCTC	1 cut(s)	32
MboI	GATC	6 cut(s)	304, 691, 739, 776, 826, 853
MboII	GAAGA	6 cut(s)	163, 280, 428, 533, 665, 986
MflI	RGATCY	3 cut(s)	739, 776, 853
MhlI	GDGCHC	2 cut(s)	140, 478
MluCI	AATT	9 cut(s)	280, 643, 665, 732, 918, 926, 944, 967, 1029
MlyI	GAGTC	1 cut(s)	170
MmeI	TCCRAC	3 cut(s)	519, 930, 990
MnlI	CCTC	8 cut(s)	150, 310, 330, 346, 349, 428, 456, 901
MseI	TTAA	6 cut(s)	234, 726, 744, 921, 965, 1020
MspA1I	CMGCKG	1 cut(s)	247
MspCI	CTTAAG	1 cut(s)	1019
MspI	CCGG	2 cut(s)	8, 38
MspR9I	CCNGG	2 cut(s)	293, 684
Mva1269I	GAATGC	2 cut(s)	467, 600
MvaI	CCWGG	2 cut(s)	293, 684
MvnI	CGCG	1 cut(s)	810
MwoI	GCNNNNNNNGC	8 cut(s)	38, 144, 156, 464, 473, 635, 878, 997
NcoI	CCATGG	1 cut(s)	546
NdeII	GATC	6 cut(s)	304, 691, 739, 776, 826, 853
NlaIII	CATG	4 cut(s)	154, 326, 550, 827
NlaIV	GGNNCC	4 cut(s)	45, 138, 276, 583
NmuCI	GTSAC	1 cut(s)	792
NspI	RCATGY	1 cut(s)	326
PaeI	GCATGC	1 cut(s)	326
PcsI	WCGNNNNNNNCGW	1 cut(s)	80
PctI	GAATGC	2 cut(s)	467, 600
PfeI	GAWTC	5 cut(s)	116, 330, 847, 953, 1024
PflMI	CCANNNNNTGG	2 cut(s)	298, 850
PinAI	ACCGGT	1 cut(s)	7
PkrI	GCNGC	6 cut(s)	31, 79, 82, 149, 772, 999
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
PshAI	GACNNNNGTC	3 cut(s)	609, 894, 981
PshBI	ATTAAT	1 cut(s)	921
Psp6I	CCWGG	2 cut(s)	291, 682
PspFI	CCCAGC	1 cut(s)	133
PspGI	CCWGG	2 cut(s)	291, 682
PspN4I	GGNNCC	4 cut(s)	45, 138, 276, 583
PspOMI	GGGCCC	1 cut(s)	136
PspPI	GGNCC	2 cut(s)	136, 137
PstI	CTGCAG	1 cut(s)	640
PstNI	CAGNNNCTG	2 cut(s)	513, 850
PsuI	RGATCY	3 cut(s)	739, 776, 853
SaqAI	TTAA	6 cut(s)	234, 726, 744, 921, 965, 1020
SatI	GCNGC	6 cut(s)	30, 78, 81, 148, 771, 998
Sau3AI	GATC	6 cut(s)	304, 691, 739, 776, 826, 853
Sau96I	GGNCC	2 cut(s)	136, 137
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	2 cut(s)	293, 684
SduI	GDGCHC	2 cut(s)	140, 478
SfaNI	GCATC	2 cut(s)	616, 802
SfcI	CTRYAG	1 cut(s)	636
SmlI	CTYRAG	2 cut(s)	986, 1019
SmoI	CTYRAG	2 cut(s)	986, 1019
SphI	GCATGC	1 cut(s)	326
Sse9I	AATT	9 cut(s)	280, 643, 665, 732, 918, 926, 944, 967, 1029
SsiI	CCGC	6 cut(s)	30, 41, 77, 80, 245, 997
SspMI	CTAG	4 cut(s)	578, 630, 857, 899
StyD4I	CCNGG	2 cut(s)	291, 682
StyI	CCWWGG	2 cut(s)	105, 546
TaaI	ACNGT	1 cut(s)	88
TaiI	ACGT	1 cut(s)	423
TaqI	TCGA	5 cut(s)	34, 174, 227, 613, 805
TasI	AATT	9 cut(s)	280, 643, 665, 732, 918, 926, 944, 967, 1029
TauI	GCSGC	4 cut(s)	32, 80, 83, 1000
TfiI	GAWTC	5 cut(s)	116, 330, 847, 953, 1024
Tru1I	TTAA	6 cut(s)	234, 726, 744, 921, 965, 1020
Tru9I	TTAA	6 cut(s)	234, 726, 744, 921, 965, 1020
TscAI	CASTG	2 cut(s)	801, 985
TseFI	GTSAC	1 cut(s)	792
TseI	GCWGC	2 cut(s)	147, 770
Tsp45I	GTSAC	1 cut(s)	792
TspDTI	ATGAA	4 cut(s)	301, 429, 855, 939
TspGWI	ACGGA	2 cut(s)	6, 287
TspRI	CASTG	2 cut(s)	801, 985
Van91I	CCANNNNNTGG	2 cut(s)	298, 850
Vha464I	CTTAAG	1 cut(s)	1019
VspI	ATTAAT	1 cut(s)	921
XapI	RAATTY	3 cut(s)	665, 926, 967
XceI	RCATGY	1 cut(s)	326
XspI	CTAG	4 cut(s)	578, 630, 857, 899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.