AT3G22160

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015164
Physical Location & Seq
Reverse (-)
7817779 .. 7818985
1207 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G22160.1

Sequence Viewer

Length: 579 bp
ATGGCTAACCCCAACGAGTGGTCTCAGTTCTACAACAATAACCAAACCTTCTTCACAACTTCTACCACCGCTTCAACCGCTGTTACAACCACCACTGCCGGTGATACCACCTCCATAGACTCTCGTCTGAGTCCAGAAACTGGCCGTGTAACCAAGCCAACACGTAGAAGGTCCAGAGCCTCACGTAGAACACCAACAACGCTTCTCAACACCGACACTTCCAACTTCCGTGCCATGGTTCAGCAATACACTGGCGGTCCATCCGCTATGGCTTTCGGGTCCGGTAATACTACTTCTGCTTTTAGCCTCACTTCATCGTCGGATCCATCAGCTGGATCTTCTCAACAAGCTCCTTGGCAATATAATTTCCAGCCTCACGCGCCGCTTCAGCCACCGCAACGGCCTTACATGTTTTCTTTGAACAACGTGAATCCCGTGGTTGGATATAGTAACATGAACAACCCTAATACGATGGTTTCCGGTGTGTTTGGGACGGTGGATGGTTCTGGTGGAGGAGGTTCTGCTCCGTCGTCAAAGGAGGCTACGAATAGTAATTCTTCTTCTTCGAGGTTGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

192

Amino Acids

20.39

Weight (kDa)

10.09

Isoelectric Point (pI)

51.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 64 - 89 3.8e-08 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015164)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22160 AT4G15120
fragaria_vesca FvH4_6g39500
prunus_persica Prupe.3G185800_v2.0.a1
pyrus_communis pycom09g06070 pycom17g12150
rosa_chinensis RchiOBHm_Chr2g0153531
rosa_laevigata RLG00000020707
rosa_multiflora Rmu_sc0003976.1_g000009
rosa_roxburghii Rroxscaffold_2G00094950
rosa_rugosa Rorug02G0439000
rosa_samantha Rh2AG503000 Rh2BG513700 Rh2CG488800 Rh2DG525400
rosa_wichuraiana Rw2G041290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 18, 140, 332
AccII CGCG 1 cut(s) 380
AciI CCGC 6 cut(s) 69, 78, 255, 264, 383, 395
AclWI GGATC 3 cut(s) 317, 330, 343
AcoI YGGCCR 1 cut(s) 142
AcuI CTGAAG 1 cut(s) 371
AfiI CCNNNNNNNGG 5 cut(s) 18, 140, 235, 332, 440
AflIII ACRYGT 2 cut(s) 161, 408
AgsI TTSAA 2 cut(s) 75, 421
AluBI AGCT 2 cut(s) 332, 350
AluI AGCT 2 cut(s) 332, 350
Alw26I GTCTC 1 cut(s) 27
AlwI GGATC 3 cut(s) 317, 330, 343
AlwNI CAGNNNCTG 1 cut(s) 140
AoxI GGCC 2 cut(s) 142, 401
AspLEI GCGC 1 cut(s) 382
AspS9I GGNCC 3 cut(s) 171, 257, 279
AsuHPI GGTGA 1 cut(s) 113
AvaII GGWCC 3 cut(s) 171, 257, 279
BamHI GGATCC 1 cut(s) 322
BarI GAAGNNNNNNTAC 4 cut(s) 277, 309, 544, 576
BccI CCATC 4 cut(s) 268, 334, 466, 494
BceAI ACGGC 2 cut(s) 129, 416
BcoDI GTCTC 1 cut(s) 27
BisI GCNGC 1 cut(s) 383
BlsI GCNGC 1 cut(s) 384
Bme18I GGWCC 3 cut(s) 171, 257, 279
BmgT120I GGNCC 3 cut(s) 171, 257, 279
BmiI GGNNCC 2 cut(s) 280, 324
BoxI GACNNNNGTC 1 cut(s) 123
BsaAI YACGTR 2 cut(s) 164, 185
BsaI GGTCTC 1 cut(s) 27
BsaJI CCNNGG 3 cut(s) 234, 353, 435
BsaWI WCCGGW 2 cut(s) 281, 479
Bsc4I CCNNNNNNNGG 5 cut(s) 18, 140, 235, 332, 440
Bse118I RCCGGY 1 cut(s) 98
Bse1I ACTGG 2 cut(s) 145, 256
BseDI CCNNGG 3 cut(s) 234, 353, 435
BseGI GGATG 2 cut(s) 260, 505
BseLI CCNNNNNNNGG 5 cut(s) 18, 140, 235, 332, 440
BseMII CTCAG 2 cut(s) 38, 119
BseNI ACTGG 2 cut(s) 145, 256
BseRI GAGGAG 1 cut(s) 528
Bsh1236I CGCG 1 cut(s) 380
BshFI GGCC 2 cut(s) 144, 403
BsiSI CCGG 3 cut(s) 99, 282, 480
BslFI GGGAC 1 cut(s) 505
BslI CCNNNNNNNGG 5 cut(s) 18, 140, 235, 332, 440
BsmAI GTCTC 1 cut(s) 27
BsmFI GGGAC 1 cut(s) 505
BsnI GGCC 2 cut(s) 144, 403
Bso31I GGTCTC 1 cut(s) 27
Bsp143I GATC 2 cut(s) 322, 335
Bsp19I CCATGG 1 cut(s) 234
BspACI CCGC 6 cut(s) 69, 78, 255, 264, 383, 395
BspANI GGCC 2 cut(s) 144, 403
BspCNI CTCAG 2 cut(s) 37, 120
BspFNI CGCG 1 cut(s) 380
BspLI GGNNCC 2 cut(s) 280, 324
BspPI GGATC 3 cut(s) 317, 330, 343
BspTNI GGTCTC 1 cut(s) 27
BsrFI RCCGGY 1 cut(s) 98
BsrI ACTGG 2 cut(s) 145, 256
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 3 cut(s) 234, 353, 435
BssMI GATC 2 cut(s) 322, 335
BssT1I CCWWGG 2 cut(s) 234, 353
Bst4CI ACNGT 1 cut(s) 496
BstBAI YACGTR 2 cut(s) 164, 185
BstDEI CTNAG 2 cut(s) 24, 128
BstDSI CCRYGG 2 cut(s) 234, 435
BstF5I GGATG 2 cut(s) 260, 505
BstFNI CGCG 1 cut(s) 380
BstHHI GCGC 1 cut(s) 382
BstKTI GATC 2 cut(s) 325, 338
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 2 cut(s) 322, 335
BstMWI GCNNNNNNNGC 3 cut(s) 77, 379, 388
BstNSI RCATGY 1 cut(s) 412
BstPAI GACNNNNGTC 1 cut(s) 123
BstUI CGCG 1 cut(s) 380
BstX2I RGATCY 2 cut(s) 322, 335
BstYI RGATCY 2 cut(s) 322, 335
BsuRI GGCC 2 cut(s) 144, 403
BtgI CCRYGG 2 cut(s) 234, 435
BtsCI GGATG 2 cut(s) 260, 505
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 2 cut(s) 93, 249
CaiI CAGNNNCTG 1 cut(s) 140
CfoI GCGC 1 cut(s) 382
Cfr10I RCCGGY 1 cut(s) 98
Cfr13I GGNCC 3 cut(s) 171, 257, 279
CviAII CATG 3 cut(s) 235, 409, 454
DdeI CTNAG 2 cut(s) 24, 128
DpnI GATC 2 cut(s) 324, 337
DpnII GATC 2 cut(s) 322, 335
EaeI YGGCCR 1 cut(s) 142
Eco130I CCWWGG 2 cut(s) 234, 353
Eco31I GGTCTC 1 cut(s) 27
Eco47I GGWCC 3 cut(s) 171, 257, 279
Eco57I CTGAAG 1 cut(s) 371
EcoT14I CCWWGG 2 cut(s) 234, 353
ErhI CCWWGG 2 cut(s) 234, 353
FaeI CATG 3 cut(s) 238, 412, 457
FaiI YATR 7 cut(s) 116, 236, 269, 363, 410, 447, 455
FaqI GGGAC 1 cut(s) 505
FatI CATG 3 cut(s) 234, 408, 453
Fnu4HI GCNGC 1 cut(s) 383
FokI GGATG 2 cut(s) 247, 512
Fsp4HI GCNGC 1 cut(s) 383
GlaI GCGC 1 cut(s) 381
GluI GCNGC 1 cut(s) 383
HaeIII GGCC 2 cut(s) 144, 403
HapII CCGG 3 cut(s) 99, 282, 480
HhaI GCGC 1 cut(s) 382
Hin1II CATG 3 cut(s) 238, 412, 457
Hin6I GCGC 1 cut(s) 380
HinP1I GCGC 1 cut(s) 380
HinfI GANTC 3 cut(s) 119, 130, 430
HpaII CCGG 3 cut(s) 99, 282, 480
HphI GGTGA 1 cut(s) 113
Hpy188I TCNGA 2 cut(s) 129, 322
Hpy188III TCNNGA 2 cut(s) 134, 174
Hpy99I CGWCG 2 cut(s) 322, 532
HpyAV CCTTC 2 cut(s) 58, 162
HpyCH4III ACNGT 1 cut(s) 496
HpyCH4IV ACGT 3 cut(s) 163, 184, 426
HpyCH4V TGCA 1 cut(s) 574
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 379, 388
HpyF3I CTNAG 2 cut(s) 24, 128
HpySE526I ACGT 3 cut(s) 163, 184, 426
Hsp92II CATG 3 cut(s) 238, 412, 457
HspAI GCGC 1 cut(s) 380
Kzo9I GATC 2 cut(s) 322, 335
LmnI GCTCC 2 cut(s) 355, 529
MaeII ACGT 3 cut(s) 163, 184, 426
MaeIII GTNAC 3 cut(s) 82, 148, 449
MalI GATC 2 cut(s) 324, 337
MboI GATC 2 cut(s) 322, 335
MboII GAAGA 5 cut(s) 43, 330, 549, 552, 555
MflI RGATCY 2 cut(s) 322, 335
MluCI AATT 2 cut(s) 364, 553
MlyI GAGTC 2 cut(s) 113, 139
MmeI TCCRAC 3 cut(s) 246, 300, 421
MnlI CCTC 8 cut(s) 121, 190, 317, 384, 506, 509, 532, 561
MspA1I CMGCKG 2 cut(s) 80, 332
MspI CCGG 3 cut(s) 99, 282, 480
MvnI CGCG 1 cut(s) 380
MwoI GCNNNNNNNGC 3 cut(s) 77, 379, 388
NcoI CCATGG 1 cut(s) 234
NdeII GATC 2 cut(s) 322, 335
NlaIII CATG 3 cut(s) 238, 412, 457
NlaIV GGNNCC 2 cut(s) 280, 324
NspI RCATGY 1 cut(s) 412
PciI ACATGT 1 cut(s) 408
PcsI WCGNNNNNNNCGW 1 cut(s) 432
PfeI GAWTC 1 cut(s) 430
PflMI CCANNNNNTGG 3 cut(s) 18, 140, 332
PkrI GCNGC 1 cut(s) 384
PleI GAGTC 2 cut(s) 113, 138
PpsI GAGTC 2 cut(s) 113, 138
Ppu21I YACGTR 2 cut(s) 164, 185
PscI ACATGT 1 cut(s) 408
PshAI GACNNNNGTC 1 cut(s) 123
PspN4I GGNNCC 2 cut(s) 280, 324
PspPI GGNCC 3 cut(s) 171, 257, 279
PstNI CAGNNNCTG 1 cut(s) 140
PsuI RGATCY 2 cut(s) 322, 335
PvuII CAGCTG 1 cut(s) 332
SatI GCNGC 1 cut(s) 383
Sau3AI GATC 2 cut(s) 322, 335
Sau96I GGNCC 3 cut(s) 171, 257, 279
SchI GAGTC 2 cut(s) 113, 139
SinI GGWCC 3 cut(s) 171, 257, 279
Sse9I AATT 2 cut(s) 364, 553
SsiI CCGC 6 cut(s) 69, 78, 255, 264, 383, 395
StyI CCWWGG 2 cut(s) 234, 353
TaaI ACNGT 1 cut(s) 496
TaiI ACGT 3 cut(s) 166, 187, 429
TaqI TCGA 1 cut(s) 566
TasI AATT 2 cut(s) 364, 553
TauI GCSGC 1 cut(s) 385
TfiI GAWTC 1 cut(s) 430
TscAI CASTG 2 cut(s) 100, 256
TspDTI ATGAA 2 cut(s) 303, 470
TspGWI ACGGA 2 cut(s) 218, 516
TspRI CASTG 2 cut(s) 100, 256
Van91I CCANNNNNTGG 3 cut(s) 18, 140, 332
VpaK11BI GGWCC 3 cut(s) 171, 257, 279
XceI RCATGY 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.