AT4G15120

VQ motif-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0015164
Physical Location & Seq
Forward (+)
8634508 .. 8635591
1084 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G15120.1

Sequence Viewer

Length: 582 bp
ATGGCCAACTCTAACAACGACTGGTCTCAATTCTACAACAACCAAACCTTCTTCACCACCGCAACCTCCACCGTCACAACCACCACCACCACCGCCACGTCAGCTGATTCTCCTCTGAGTCCGGATAATCGCCGTGTTGCAAAGCCAACACGTCGGAGATCTAGAGCCTCACGTCGTACACCTACTACACTTTTCAACACCGACACAGCCAACTTCAGAGCCATGGTGCAACAATTCACCGGCGGTCCATCCGCCGTTGCGTTCGGGTCTTCGCCGTCGTCTGGTTTTAGTCTCACCTCGTCTGATCCCACTGCCGGAGTATCTTCCTCTCCTTGGCAATACGCTAATTTGCAGAACCAAATGGCTCATAACGAGCTAATGCAACAACAGCGACCGTACATGTTTTCGTCGTCAAACAACGTGAGCACTCTTAGCTATCCTAACGCAGTGGCTACCGATGGTTTTGTGGGGGCGGAGGAGAGTAGAGAGGGTGGTGGAGGAGGAGGAGGAGGTTATGCTCCGTCGTCGGAGAGGAATAGCAATACTACCTATTCCGAGGAAAAAACGGTATATTATTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

193

Amino Acids

20.74

Weight (kDa)

8.01

Isoelectric Point (pI)

69.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 60 - 85 1.9e-09 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015164)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22160 AT4G15120
fragaria_vesca FvH4_6g39500
prunus_persica Prupe.3G185800_v2.0.a1
pyrus_communis pycom09g06070 pycom17g12150
rosa_chinensis RchiOBHm_Chr2g0153531
rosa_laevigata RLG00000020707
rosa_multiflora Rmu_sc0003976.1_g000009
rosa_roxburghii Rroxscaffold_2G00094950
rosa_rugosa Rorug02G0439000
rosa_samantha Rh2AG503000 Rh2BG513700 Rh2CG488800 Rh2DG525400
rosa_wichuraiana Rw2G041290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 121
AciI CCGC 5 cut(s) 60, 93, 243, 252, 473
AclWI GGATC 1 cut(s) 299
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 199
AfaI GTAC 2 cut(s) 178, 398
AfiI CCNNNNNNNGG 3 cut(s) 281, 314, 333
AflIII ACRYGT 2 cut(s) 149, 399
AgsI TTSAA 1 cut(s) 196
AjiI CACGTC 3 cut(s) 99, 152, 173
AluBI AGCT 3 cut(s) 104, 376, 435
AluI AGCT 3 cut(s) 104, 376, 435
Alw21I GWGCWC 1 cut(s) 428
Alw26I GTCTC 2 cut(s) 30, 296
AlwI GGATC 1 cut(s) 299
Aor13HI TCCGGA 1 cut(s) 121
AoxI GGCC 1 cut(s) 3
AspS9I GGNCC 1 cut(s) 245
AsuHPI GGTGA 3 cut(s) 46, 229, 286
AvaII GGWCC 1 cut(s) 245
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 261
Bbv12I GWGCWC 1 cut(s) 428
BccI CCATC 2 cut(s) 256, 452
BceAI ACGGC 3 cut(s) 117, 239, 259
BcoDI GTCTC 2 cut(s) 30, 296
BfaI CTAG 1 cut(s) 162
BglII AGATCT 1 cut(s) 158
Bme18I GGWCC 1 cut(s) 245
BmgBI CACGTC 3 cut(s) 99, 152, 173
BmgT120I GGNCC 1 cut(s) 245
BpiI GAAGAC 1 cut(s) 261
BsaI GGTCTC 1 cut(s) 30
BsaJI CCNNGG 3 cut(s) 222, 332, 555
BsaWI WCCGGW 1 cut(s) 121
Bsc4I CCNNNNNNNGG 3 cut(s) 281, 314, 333
Bse118I RCCGGY 1 cut(s) 239
Bse1I ACTGG 1 cut(s) 26
BseAI TCCGGA 1 cut(s) 121
BseDI CCNNGG 3 cut(s) 222, 332, 555
BseGI GGATG 1 cut(s) 248
BseLI CCNNNNNNNGG 3 cut(s) 281, 314, 333
BseMII CTCAG 1 cut(s) 107
BseNI ACTGG 1 cut(s) 26
BseRI GAGGAG 6 cut(s) 102, 491, 513, 516, 519, 522
Bsh1285I CGRYCG 1 cut(s) 395
BshFI GGCC 1 cut(s) 5
BsiEI CGRYCG 1 cut(s) 395
BsiHKAI GWGCWC 1 cut(s) 428
BsiSI CCGG 3 cut(s) 122, 240, 315
BslI CCNNNNNNNGG 3 cut(s) 281, 314, 333
BsmAI GTCTC 2 cut(s) 30, 296
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 30
Bsp1286I GDGCHC 1 cut(s) 428
Bsp13I TCCGGA 1 cut(s) 121
Bsp143I GATC 2 cut(s) 158, 304
Bsp19I CCATGG 1 cut(s) 222
BspACI CCGC 5 cut(s) 60, 93, 243, 252, 473
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 108
BspEI TCCGGA 1 cut(s) 121
BspPI GGATC 1 cut(s) 299
BspTNI GGTCTC 1 cut(s) 30
BsrFI RCCGGY 1 cut(s) 239
BsrI ACTGG 1 cut(s) 26
BssAI RCCGGY 1 cut(s) 239
BssECI CCNNGG 3 cut(s) 222, 332, 555
BssMI GATC 2 cut(s) 158, 304
BssT1I CCWWGG 2 cut(s) 222, 332
Bst4CI ACNGT 3 cut(s) 73, 396, 568
BstDEI CTNAG 3 cut(s) 116, 431, 579
BstDSI CCRYGG 1 cut(s) 222
BstF5I GGATG 1 cut(s) 248
BstKTI GATC 2 cut(s) 161, 307
BstMAI GTCTC 2 cut(s) 30, 296
BstMBI GATC 2 cut(s) 158, 304
BstMCI CGRYCG 1 cut(s) 395
BstMWI GCNNNNNNNGC 3 cut(s) 101, 388, 432
BstNSI RCATGY 1 cut(s) 403
BstV2I GAAGAC 1 cut(s) 261
BstX2I RGATCY 1 cut(s) 158
BstYI RGATCY 1 cut(s) 158
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 222
BtrI CACGTC 3 cut(s) 99, 152, 173
BtsCI GGATG 1 cut(s) 248
BtsI GCAGTG 2 cut(s) 309, 453
BtsIMutI CAGTG 2 cut(s) 309, 453
Cfr10I RCCGGY 1 cut(s) 239
Cfr13I GGNCC 1 cut(s) 245
Csp6I GTAC 2 cut(s) 177, 397
CviAII CATG 2 cut(s) 223, 400
CviQI GTAC 2 cut(s) 177, 397
DdeI CTNAG 3 cut(s) 116, 431, 579
DpnI GATC 2 cut(s) 160, 306
DpnII GATC 2 cut(s) 158, 304
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 2 cut(s) 241, 488
Eco130I CCWWGG 2 cut(s) 222, 332
Eco31I GGTCTC 1 cut(s) 30
Eco47I GGWCC 1 cut(s) 245
Eco57I CTGAAG 1 cut(s) 199
EcoT14I CCWWGG 2 cut(s) 222, 332
ErhI CCWWGG 2 cut(s) 222, 332
FaeI CATG 2 cut(s) 226, 403
FaiI YATR 5 cut(s) 224, 369, 401, 516, 571
FatI CATG 2 cut(s) 222, 399
FokI GGATG 1 cut(s) 235
FspBI CTAG 1 cut(s) 162
HaeIII GGCC 1 cut(s) 5
HapII CCGG 3 cut(s) 122, 240, 315
Hin1II CATG 2 cut(s) 226, 403
HinfI GANTC 2 cut(s) 107, 118
HpaII CCGG 3 cut(s) 122, 240, 315
HphI GGTGA 3 cut(s) 46, 229, 286
Hpy166II GTNNAC 1 cut(s) 179
Hpy188I TCNGA 6 cut(s) 117, 156, 218, 304, 529, 556
Hpy188III TCNNGA 2 cut(s) 122, 162
Hpy8I GTNNAC 1 cut(s) 179
Hpy99I CGWCG 6 cut(s) 156, 177, 280, 412, 526, 529
HpyAV CCTTC 1 cut(s) 58
HpyCH4III ACNGT 3 cut(s) 73, 396, 568
HpyCH4IV ACGT 4 cut(s) 98, 151, 172, 420
HpyCH4V TGCA 4 cut(s) 140, 229, 352, 382
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 388, 432
HpyF3I CTNAG 3 cut(s) 116, 431, 579
HpySE526I ACGT 4 cut(s) 98, 151, 172, 420
Hsp92II CATG 2 cut(s) 226, 403
Kpn2I TCCGGA 1 cut(s) 121
Kzo9I GATC 2 cut(s) 158, 304
LmnI GCTCC 1 cut(s) 523
LpnPI CCDG 5 cut(s) 7, 135, 253, 267, 328
MaeI CTAG 1 cut(s) 162
MaeII ACGT 4 cut(s) 98, 151, 172, 420
MaeIII GTNAC 1 cut(s) 73
MalI GATC 2 cut(s) 160, 306
MboI GATC 2 cut(s) 158, 304
MboII GAAGA 3 cut(s) 43, 261, 315
MflI RGATCY 1 cut(s) 158
MhlI GDGCHC 1 cut(s) 428
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 29, 233, 346
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 127
MmeI TCCRAC 2 cut(s) 134, 507
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 121
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 104
MspI CCGG 3 cut(s) 122, 240, 315
MwoI GCNNNNNNNGC 3 cut(s) 101, 388, 432
NcoI CCATGG 1 cut(s) 222
NdeII GATC 2 cut(s) 158, 304
NlaIII CATG 2 cut(s) 226, 403
NmuCI GTSAC 1 cut(s) 73
NspI RCATGY 1 cut(s) 403
PciI ACATGT 1 cut(s) 399
PfeI GAWTC 1 cut(s) 107
PleI GAGTC 1 cut(s) 126
PpsI GAGTC 1 cut(s) 126
PscI ACATGT 1 cut(s) 399
PspPI GGNCC 1 cut(s) 245
PsuI RGATCY 1 cut(s) 158
PvuII CAGCTG 1 cut(s) 104
RsaI GTAC 2 cut(s) 178, 398
RsaNI GTAC 2 cut(s) 177, 397
Sau3AI GATC 2 cut(s) 158, 304
Sau96I GGNCC 1 cut(s) 245
SchI GAGTC 1 cut(s) 127
SduI GDGCHC 1 cut(s) 428
SgrAI CRCCGGYG 1 cut(s) 239
SinI GGWCC 1 cut(s) 245
Sse9I AATT 3 cut(s) 29, 233, 346
SsiI CCGC 5 cut(s) 60, 93, 243, 252, 473
SspMI CTAG 1 cut(s) 162
StyI CCWWGG 2 cut(s) 222, 332
TaaI ACNGT 3 cut(s) 73, 396, 568
TaiI ACGT 4 cut(s) 101, 154, 175, 423
TasI AATT 3 cut(s) 29, 233, 346
TfiI GAWTC 1 cut(s) 107
TscAI CASTG 2 cut(s) 316, 453
TseFI GTSAC 1 cut(s) 73
Tsp45I GTSAC 1 cut(s) 73
TspGWI ACGGA 1 cut(s) 510
TspRI CASTG 2 cut(s) 316, 453
VpaK11BI GGWCC 1 cut(s) 245
XbaI TCTAGA 1 cut(s) 161
XceI RCATGY 1 cut(s) 403
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.