Rh2CG488800

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0015164
Physical Location & Seq
Reverse (-)
65546754 .. 65548781
2028 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG488800.1

Sequence Viewer

Length: 894 bp
ATGCCACGTGACCAAGAAAGTCTGACTTTTGACCAGCCTCCCAGAGCCACCATATATACCTCAATCCTACGCTCTCATATTCCTTCCCCCAAACCAGAGAAAGAAAAACCACTTCCTTTTCTCCGTTCACATTTCTTTCTTTGCTTTATGGCCCTGAGTGGAACCATGTCCAACCCCAGCGACTGGCTCCAATACTACAACGTCCAGAACAACACCCTCTCCGGTCAAGCCCTCCCTTTGTCGTCCCACGGCGGCCACTTGTCCTCCGGTGCCGGCTTGTTCGGTCAAGACCAAGCTGTCTCTCATCACGAAGCCACTGCCGTCACCACCACCACCACCACCGTTACAGCTTCTGCTGCTGCACCGAATCCCAGCTCCAGTATCAACACCAACAGCTTGAGCCCGGAAGGCCGGGTTTCCAAGCCGGTCCGAAAACGGTCCAGGGCTTCCAGAAGAACCCCCACCACGCTGCTCAACACCGACACTGCGAACTTTCGCGCTATGGTGCAGCAGTTCACTGGCGGCCCAAGTACGGCTTCGTTTACCACCCAGCCCGGTGCTACCAATTTCAGTTTCGGACTTGGGACCAGACAAGGGTTTGTGAACCCTAATGCTTCAGTGATGGTGCCACCTGGGTACAACCATCTACAGCTTCAGCAGCAACAGCAAAACCCGTATCTGCTTTCACTGAACAACAATAATACCAGTGATAATCATGGGTTTGTTCAGAGATTAATGAGCTCGTCATCATCGGCAAGACCCACAAACATGGGGGTTTCATTTTCTTCTGATGAGTTTTCGTCCCAAGTGCAAGGGCAGCCTAGTCTGGTTGGAAGTGGTAGGCCTAATTCGAATTCCTCCAATGAGAACAGGAGCAACAGTTTCTTGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

297

Amino Acids

32.09

Weight (kDa)

9.92

Isoelectric Point (pI)

52.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 153 - 178 7.2e-10 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015164)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22160 AT4G15120
fragaria_vesca FvH4_6g39500
prunus_persica Prupe.3G185800_v2.0.a1
pyrus_communis pycom09g06070 pycom17g12150
rosa_chinensis RchiOBHm_Chr2g0153531
rosa_laevigata RLG00000020707
rosa_multiflora Rmu_sc0003976.1_g000009
rosa_roxburghii Rroxscaffold_2G00094950
rosa_rugosa Rorug02G0439000
rosa_samantha Rh2AG503000 Rh2BG513700 Rh2CG488800 Rh2DG525400
rosa_wichuraiana Rw2G041290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 296
AccB1I GGYRCC 2 cut(s) 269, 625
AccB7I CCANNNNNTGG 1 cut(s) 183
AccII CGCG 1 cut(s) 498
AciI CCGC 2 cut(s) 252, 522
AcoI YGGCCR 1 cut(s) 253
AcsI RAATTY 1 cut(s) 853
AcuI CTGAAG 2 cut(s) 600, 638
AcvI CACGTG 1 cut(s) 8
AfaI GTAC 2 cut(s) 532, 638
AfiI CCNNNNNNNGG 3 cut(s) 183, 532, 594
AjnI CCWGG 2 cut(s) 440, 631
AjuI GAANNNNNNNTTGG 4 cut(s) 520, 552, 557, 589
AluBI AGCT 6 cut(s) 296, 350, 375, 396, 652, 741
AluI AGCT 6 cut(s) 296, 350, 375, 396, 652, 741
Alw21I GWGCWC 1 cut(s) 743
Alw26I GTCTC 1 cut(s) 304
AlwNI CAGNNNCTG 2 cut(s) 183, 353
AoxI GGCC 5 cut(s) 150, 253, 409, 523, 842
ApeKI GCWGC 6 cut(s) 356, 359, 469, 508, 658, 817
ApoI RAATTY 1 cut(s) 853
AseI ATTAAT 1 cut(s) 734
AspLEI GCGC 1 cut(s) 500
AspS9I GGNCC 5 cut(s) 151, 427, 438, 524, 585
AsuC2I CCSGG 3 cut(s) 404, 413, 555
AsuHPI GGTGA 1 cut(s) 316
AsuII TTCGAA 1 cut(s) 851
AvaII GGWCC 3 cut(s) 427, 438, 585
BanI GGYRCC 2 cut(s) 269, 625
BanII GRGCYC 2 cut(s) 404, 743
BbrPI CACGTG 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 743
BbvI GCAGC 6 cut(s) 343, 346, 456, 520, 670, 829
BccI CCATC 2 cut(s) 616, 651
BceAI ACGGC 3 cut(s) 265, 305, 549
BcgI CGANNNNNNTGC 2 cut(s) 299, 333
BciT130I CCWGG 2 cut(s) 442, 633
BcnI CCSGG 3 cut(s) 404, 413, 555
BcoDI GTCTC 1 cut(s) 304
BfaI CTAG 1 cut(s) 822
BfmI CTRYAG 1 cut(s) 647
BglI GCCNNNNNGGC 1 cut(s) 408
BisI GCNGC 8 cut(s) 253, 357, 360, 470, 509, 523, 659, 818
BlsI GCNGC 8 cut(s) 254, 358, 361, 471, 510, 524, 660, 819
Bme1390I CCNGG 5 cut(s) 404, 413, 442, 555, 633
Bme18I GGWCC 3 cut(s) 427, 438, 585
BmgT120I GGNCC 5 cut(s) 151, 427, 438, 524, 585
BmiI GGNNCC 5 cut(s) 163, 188, 271, 586, 627
BmrFI CCNGG 5 cut(s) 404, 413, 442, 555, 633
BpmI CTGGAG 1 cut(s) 361
Bpu14I TTCGAA 1 cut(s) 851
BpuEI CTTGAG 1 cut(s) 418
BpuMI CCSGG 3 cut(s) 404, 413, 555
BsaAI YACGTR 1 cut(s) 8
BsaJI CCNNGG 3 cut(s) 247, 441, 632
BsaWI WCCGGW 2 cut(s) 221, 266
BsaXI ACNNNNNCTCC 5 cut(s) 203, 233, 248, 278, 865
Bsc4I CCNNNNNNNGG 3 cut(s) 183, 532, 594
Bse118I RCCGGY 2 cut(s) 272, 424
Bse1I ACTGG 4 cut(s) 188, 378, 523, 705
BseBI CCWGG 2 cut(s) 442, 633
BseDI CCNNGG 3 cut(s) 247, 441, 632
BseLI CCNNNNNNNGG 3 cut(s) 183, 532, 594
BseMII CTCAG 1 cut(s) 146
BseNI ACTGG 4 cut(s) 188, 378, 523, 705
BseXI GCAGC 6 cut(s) 343, 346, 456, 520, 670, 829
BseYI CCCAGC 3 cut(s) 176, 371, 549
BsgI GTGCAG 2 cut(s) 345, 527
Bsh1236I CGCG 1 cut(s) 498
BshFI GGCC 5 cut(s) 152, 255, 411, 525, 844
BshNI GGYRCC 2 cut(s) 269, 625
BsiHKAI GWGCWC 1 cut(s) 743
BsiSI CCGG 7 cut(s) 222, 267, 273, 404, 412, 425, 555
BslFI GGGAC 3 cut(s) 229, 598, 787
BslI CCNNNNNNNGG 3 cut(s) 183, 532, 594
BsmAI GTCTC 1 cut(s) 304
BsmFI GGGAC 3 cut(s) 229, 598, 787
BsnI GGCC 5 cut(s) 152, 255, 411, 525, 844
Bsp119I TTCGAA 1 cut(s) 851
Bsp1286I GDGCHC 2 cut(s) 404, 743
BspACI CCGC 2 cut(s) 252, 522
BspANI GGCC 5 cut(s) 152, 255, 411, 525, 844
BspCNI CTCAG 1 cut(s) 147
BspFNI CGCG 1 cut(s) 498
BspLI GGNNCC 5 cut(s) 163, 188, 271, 586, 627
BspT104I TTCGAA 1 cut(s) 851
BspT107I GGYRCC 2 cut(s) 269, 625
BsrFI RCCGGY 2 cut(s) 272, 424
BsrI ACTGG 4 cut(s) 188, 378, 523, 705
BssAI RCCGGY 2 cut(s) 272, 424
BssECI CCNNGG 3 cut(s) 247, 441, 632
Bst2UI CCWGG 2 cut(s) 442, 633
Bst4CI ACNGT 3 cut(s) 343, 438, 881
BstBAI YACGTR 1 cut(s) 8
BstBI TTCGAA 1 cut(s) 851
BstC8I GCNNGC 1 cut(s) 274
BstDEI CTNAG 1 cut(s) 155
BstDSI CCRYGG 1 cut(s) 247
BstFNI CGCG 1 cut(s) 498
BstHHI GCGC 1 cut(s) 500
BstMAI GTCTC 1 cut(s) 304
BstMWI GCNNNNNNNGC 5 cut(s) 356, 408, 658, 664, 817
BstNI CCWGG 2 cut(s) 442, 633
BstSCI CCNGG 5 cut(s) 402, 411, 440, 553, 631
BstSFI CTRYAG 1 cut(s) 647
BstUI CGCG 1 cut(s) 498
BstV1I GCAGC 6 cut(s) 343, 346, 456, 520, 670, 829
BstXI CCANNNNNNTGG 1 cut(s) 769
BsuRI GGCC 5 cut(s) 152, 255, 411, 525, 844
BtgI CCRYGG 1 cut(s) 247
BtsI GCAGTG 2 cut(s) 315, 483
BtsIMutI CAGTG 6 cut(s) 315, 483, 516, 624, 686, 712
Cac8I GCNNGC 1 cut(s) 274
CaiI CAGNNNCTG 2 cut(s) 183, 353
CfoI GCGC 1 cut(s) 500
Cfr10I RCCGGY 2 cut(s) 272, 424
Cfr13I GGNCC 5 cut(s) 151, 427, 438, 524, 585
CpoI CGGWCCG 1 cut(s) 427
Csp6I GTAC 2 cut(s) 531, 637
CspI CGGWCCG 1 cut(s) 427
CviAII CATG 3 cut(s) 166, 716, 769
CviQI GTAC 2 cut(s) 531, 637
DdeI CTNAG 1 cut(s) 155
DrdI GACNNNNNNGTC 1 cut(s) 296
DseDI GACNNNNNNGTC 1 cut(s) 296
EaeI YGGCCR 1 cut(s) 253
Ecl136II GAGCTC 1 cut(s) 741
Eco147I AGGCCT 1 cut(s) 844
Eco24I GRGCYC 2 cut(s) 404, 743
Eco47I GGWCC 3 cut(s) 427, 438, 585
Eco53kI GAGCTC 1 cut(s) 741
Eco57I CTGAAG 2 cut(s) 600, 638
Eco72I CACGTG 1 cut(s) 8
EcoICRI GAGCTC 1 cut(s) 741
EcoRI GAATTC 1 cut(s) 853
EcoRII CCWGG 2 cut(s) 440, 631
EcoT38I GRGCYC 2 cut(s) 404, 743
FaeI CATG 3 cut(s) 169, 719, 772
FaiI YATR 9 cut(s) 53, 55, 57, 78, 149, 167, 503, 717, 770
FalI AAGNNNNNCTT 4 cut(s) 10, 42, 520, 552
FaqI GGGAC 3 cut(s) 229, 598, 787
FatI CATG 3 cut(s) 165, 715, 768
Fnu4HI GCNGC 8 cut(s) 253, 357, 360, 470, 509, 523, 659, 818
FriOI GRGCYC 2 cut(s) 404, 743
Fsp4HI GCNGC 8 cut(s) 253, 357, 360, 470, 509, 523, 659, 818
FspBI CTAG 1 cut(s) 822
GlaI GCGC 1 cut(s) 499
GluI GCNGC 8 cut(s) 253, 357, 360, 470, 509, 523, 659, 818
GsaI CCCAGC 3 cut(s) 180, 375, 553
GsuI CTGGAG 1 cut(s) 361
HaeIII GGCC 5 cut(s) 152, 255, 411, 525, 844
HapII CCGG 7 cut(s) 222, 267, 273, 404, 412, 425, 555
HhaI GCGC 1 cut(s) 500
Hin1II CATG 3 cut(s) 169, 719, 772
Hin6I GCGC 1 cut(s) 498
HinP1I GCGC 1 cut(s) 498
HinfI GANTC 1 cut(s) 367
HpaII CCGG 7 cut(s) 222, 267, 273, 404, 412, 425, 555
HphI GGTGA 1 cut(s) 316
Hpy166II GTNNAC 4 cut(s) 128, 516, 543, 604
Hpy188I TCNGA 5 cut(s) 24, 431, 578, 729, 790
Hpy188III TCNNGA 4 cut(s) 205, 287, 308, 450
Hpy8I GTNNAC 4 cut(s) 128, 516, 543, 604
HpyAV CCTTC 2 cut(s) 93, 401
HpyCH4III ACNGT 3 cut(s) 343, 438, 881
HpyCH4IV ACGT 2 cut(s) 7, 201
HpyCH4V TGCA 3 cut(s) 362, 508, 811
HpyF10VI GCNNNNNNNGC 5 cut(s) 356, 408, 658, 664, 817
HpyF3I CTNAG 1 cut(s) 155
HpySE526I ACGT 2 cut(s) 7, 201
Hsp92II CATG 3 cut(s) 169, 719, 772
HspAI GCGC 1 cut(s) 498
KroI GCCGGC 1 cut(s) 272
KroNI GCCGGC 1 cut(s) 274
LmnI GCTCC 3 cut(s) 192, 380, 873
Lsp1109I GCAGC 6 cut(s) 343, 346, 456, 520, 670, 829
MaeI CTAG 1 cut(s) 822
MaeII ACGT 2 cut(s) 7, 201
MaeIII GTNAC 3 cut(s) 8, 322, 343
MboII GAAGA 2 cut(s) 465, 777
MhlI GDGCHC 2 cut(s) 404, 743
MluCI AATT 3 cut(s) 565, 847, 853
MmeI TCCRAC 2 cut(s) 195, 811
MnlI CCTC 6 cut(s) 48, 70, 227, 242, 274, 868
MroNI GCCGGC 1 cut(s) 272
MseI TTAA 1 cut(s) 734
MslI CAYNNNNRTG 1 cut(s) 767
MspI CCGG 7 cut(s) 222, 267, 273, 404, 412, 425, 555
MspR9I CCNGG 5 cut(s) 404, 413, 442, 555, 633
MvaI CCWGG 2 cut(s) 442, 633
MvnI CGCG 1 cut(s) 498
MwoI GCNNNNNNNGC 5 cut(s) 356, 408, 658, 664, 817
NaeI GCCGGC 1 cut(s) 274
NciI CCSGG 3 cut(s) 404, 413, 555
NgoMIV GCCGGC 1 cut(s) 272
NlaIII CATG 3 cut(s) 169, 719, 772
NlaIV GGNNCC 5 cut(s) 163, 188, 271, 586, 627
NmuCI GTSAC 2 cut(s) 8, 322
NspV TTCGAA 1 cut(s) 851
PceI AGGCCT 1 cut(s) 844
PdiI GCCGGC 1 cut(s) 274
PfeI GAWTC 1 cut(s) 367
PflMI CCANNNNNTGG 1 cut(s) 183
PkrI GCNGC 8 cut(s) 254, 358, 361, 471, 510, 524, 660, 819
PmaCI CACGTG 1 cut(s) 8
PmlI CACGTG 1 cut(s) 8
Ppu21I YACGTR 1 cut(s) 8
PshBI ATTAAT 1 cut(s) 734
Psp124BI GAGCTC 1 cut(s) 743
Psp6I CCWGG 2 cut(s) 440, 631
PspCI CACGTG 1 cut(s) 8
PspFI CCCAGC 3 cut(s) 176, 371, 549
PspGI CCWGG 2 cut(s) 440, 631
PspN4I GGNNCC 5 cut(s) 163, 188, 271, 586, 627
PspPI GGNCC 5 cut(s) 151, 427, 438, 524, 585
PstNI CAGNNNCTG 2 cut(s) 183, 353
RsaI GTAC 2 cut(s) 532, 638
RsaNI GTAC 2 cut(s) 531, 637
RseI CAYNNNNRTG 1 cut(s) 767
Rsr2I CGGWCCG 1 cut(s) 427
RsrII CGGWCCG 1 cut(s) 427
SacI GAGCTC 1 cut(s) 743
SaqAI TTAA 1 cut(s) 734
SatI GCNGC 8 cut(s) 253, 357, 360, 470, 509, 523, 659, 818
Sau96I GGNCC 5 cut(s) 151, 427, 438, 524, 585
ScrFI CCNGG 5 cut(s) 404, 413, 442, 555, 633
SduI GDGCHC 2 cut(s) 404, 743
SfcI CTRYAG 1 cut(s) 647
SfuI TTCGAA 1 cut(s) 851
SinI GGWCC 3 cut(s) 427, 438, 585
SmiMI CAYNNNNRTG 1 cut(s) 767
SmlI CTYRAG 1 cut(s) 397
SmoI CTYRAG 1 cut(s) 397
Sse9I AATT 3 cut(s) 565, 847, 853
SseBI AGGCCT 1 cut(s) 844
SsiI CCGC 2 cut(s) 252, 522
SspMI CTAG 1 cut(s) 822
SstI GAGCTC 1 cut(s) 743
StuI AGGCCT 1 cut(s) 844
StyD4I CCNGG 5 cut(s) 402, 411, 440, 553, 631
TaaI ACNGT 3 cut(s) 343, 438, 881
TaiI ACGT 2 cut(s) 10, 204
TaqI TCGA 1 cut(s) 851
TaqII GACCGA 1 cut(s) 272
TasI AATT 3 cut(s) 565, 847, 853
TauI GCSGC 2 cut(s) 255, 525
TfiI GAWTC 1 cut(s) 367
Tru1I TTAA 1 cut(s) 734
Tru9I TTAA 1 cut(s) 734
TscAI CASTG 6 cut(s) 322, 490, 523, 624, 693, 712
TseFI GTSAC 2 cut(s) 8, 322
TseI GCWGC 6 cut(s) 356, 359, 469, 508, 658, 817
Tsp45I GTSAC 2 cut(s) 8, 322
TspDTI ATGAA 1 cut(s) 768
TspGWI ACGGA 1 cut(s) 113
TspRI CASTG 6 cut(s) 322, 490, 523, 624, 693, 712
Van91I CCANNNNNTGG 1 cut(s) 183
VpaK11BI GGWCC 3 cut(s) 427, 438, 585
VspI ATTAAT 1 cut(s) 734
XapI RAATTY 1 cut(s) 853
XspI CTAG 1 cut(s) 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.