Rh2DG525400

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0015164
Physical Location & Seq
Reverse (-)
75095281 .. 75097298
2018 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG525400.1

Sequence Viewer

Length: 897 bp
ATGCCACGTGACCAAGAAAGTCTGACTTTTGACCAGCCTTCCAGAGCCACCATATATACCTCAATCCTACGCTCTCATATTCCTTCCCCCAAACCAGAGAAAGAAAAACCACTTCCTTTTCTCCGTTCACATTTCTTTCTTTGCTTTATGGCCCTGAGTGGAACCATGTCCAACCCCAGCGACTGGCTCCAATACTACAACGTCCAGAACAACACCCTCTCCGGTCAAGCCCTCCCTTTGTCGTCCCACGGCGGCCACTTGTCCTCCGGTGCCGGCTTGTTCGGTCAAGACCAAGCTGTCTCTCATCACGAAGCCACTGCCGTCACCACCACCACCACCACCACCGTTACAGCTTCTGCTGCTGCACCGAATCCCAGCTCCAGTAACAACACCAACAGCTTGAGCCCGGAAGGCCGGGTTTCCAAGCCGGTCCGAAAACGGTCCAGGGCTTCCAGAAGAACCCCCACCACGCTGCTCAACACCGACACTGCGAACTTTCGCGCTATGGTGCAGCAGTTCACTGGCGGCCCAAGTACGGCGTCGTTTACCACCCAGCCCGGTGCAACCAATTTCAGTTTCGGACTTGGGACCAGACAAGGGTTTGTGAACCCTAATGCTTCAGTGATGGTGCCACCTGGGTACAACCATCTACAGCTTCAGCAGCAACAGCAAAACCCGTATCTGCTTTCACTGAACAACAATAATACCAGTGATAATCATGGGTTTGTTCAGAGATTAATGAGCTCGTCATCATCGGCAAGACCCACAAACATGGGGGTTTCATTTTCTTCTGATGAGTTTTCGTCCCAAGTGCAAGGGCAGCCTGGTCTGGTTGGAAGTGGTAGGCCTAATTCGAATTCCTCCAATGAGAACAGGAGCAACAGTTTCTTGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

298

Amino Acids

32.15

Weight (kDa)

9.92

Isoelectric Point (pI)

52.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 154 - 179 7.2e-10 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015164)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22160 AT4G15120
fragaria_vesca FvH4_6g39500
prunus_persica Prupe.3G185800_v2.0.a1
pyrus_communis pycom09g06070 pycom17g12150
rosa_chinensis RchiOBHm_Chr2g0153531
rosa_laevigata RLG00000020707
rosa_multiflora Rmu_sc0003976.1_g000009
rosa_roxburghii Rroxscaffold_2G00094950
rosa_rugosa Rorug02G0439000
rosa_samantha Rh2AG503000 Rh2BG513700 Rh2CG488800 Rh2DG525400
rosa_wichuraiana Rw2G041290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 296
AccB1I GGYRCC 2 cut(s) 269, 628
AccB7I CCANNNNNTGG 1 cut(s) 183
AccII CGCG 1 cut(s) 501
AciI CCGC 2 cut(s) 252, 525
AcoI YGGCCR 1 cut(s) 253
AcsI RAATTY 1 cut(s) 856
AcuI CTGAAG 2 cut(s) 603, 641
AcvI CACGTG 1 cut(s) 8
AcyI GRCGYC 1 cut(s) 539
AfaI GTAC 2 cut(s) 535, 641
AfiI CCNNNNNNNGG 3 cut(s) 183, 535, 597
AjnI CCWGG 3 cut(s) 443, 634, 823
AjuI GAANNNNNNNTTGG 2 cut(s) 560, 592
AluBI AGCT 6 cut(s) 296, 353, 378, 399, 655, 744
AluI AGCT 6 cut(s) 296, 353, 378, 399, 655, 744
Alw21I GWGCWC 1 cut(s) 746
Alw26I GTCTC 1 cut(s) 304
AlwNI CAGNNNCTG 2 cut(s) 183, 356
AoxI GGCC 5 cut(s) 150, 253, 412, 526, 845
ApeKI GCWGC 6 cut(s) 359, 362, 472, 511, 661, 820
ApoI RAATTY 1 cut(s) 856
AseI ATTAAT 1 cut(s) 737
AspLEI GCGC 1 cut(s) 503
AspS9I GGNCC 5 cut(s) 151, 430, 441, 527, 588
AsuC2I CCSGG 3 cut(s) 407, 416, 558
AsuHPI GGTGA 1 cut(s) 316
AsuII TTCGAA 1 cut(s) 854
AvaII GGWCC 3 cut(s) 430, 441, 588
BanI GGYRCC 2 cut(s) 269, 628
BanII GRGCYC 2 cut(s) 407, 746
BbrPI CACGTG 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 746
BbvI GCAGC 6 cut(s) 346, 349, 459, 523, 673, 832
BccI CCATC 2 cut(s) 619, 654
BceAI ACGGC 3 cut(s) 265, 305, 552
BcgI CGANNNNNNTGC 2 cut(s) 299, 333
BciT130I CCWGG 3 cut(s) 445, 636, 825
BcnI CCSGG 3 cut(s) 407, 416, 558
BcoDI GTCTC 1 cut(s) 304
BfmI CTRYAG 1 cut(s) 650
BglI GCCNNNNNGGC 1 cut(s) 411
BisI GCNGC 8 cut(s) 253, 360, 363, 473, 512, 526, 662, 821
BlsI GCNGC 8 cut(s) 254, 361, 364, 474, 513, 527, 663, 822
Bme1390I CCNGG 6 cut(s) 407, 416, 445, 558, 636, 825
Bme18I GGWCC 3 cut(s) 430, 441, 588
BmgT120I GGNCC 5 cut(s) 151, 430, 441, 527, 588
BmiI GGNNCC 5 cut(s) 163, 188, 271, 589, 630
BmrFI CCNGG 6 cut(s) 407, 416, 445, 558, 636, 825
BpmI CTGGAG 1 cut(s) 364
Bpu14I TTCGAA 1 cut(s) 854
BpuEI CTTGAG 1 cut(s) 421
BpuMI CCSGG 3 cut(s) 407, 416, 558
BsaAI YACGTR 1 cut(s) 8
BsaHI GRCGYC 1 cut(s) 539
BsaJI CCNNGG 3 cut(s) 247, 444, 635
BsaWI WCCGGW 2 cut(s) 221, 266
BsaXI ACNNNNNCTCC 5 cut(s) 203, 233, 248, 278, 868
Bsc4I CCNNNNNNNGG 3 cut(s) 183, 535, 597
Bse118I RCCGGY 2 cut(s) 272, 427
Bse1I ACTGG 4 cut(s) 188, 381, 526, 708
BseBI CCWGG 3 cut(s) 445, 636, 825
BseDI CCNNGG 3 cut(s) 247, 444, 635
BseLI CCNNNNNNNGG 3 cut(s) 183, 535, 597
BseMII CTCAG 1 cut(s) 146
BseNI ACTGG 4 cut(s) 188, 381, 526, 708
BseXI GCAGC 6 cut(s) 346, 349, 459, 523, 673, 832
BseYI CCCAGC 3 cut(s) 176, 374, 552
BsgI GTGCAG 2 cut(s) 348, 530
Bsh1236I CGCG 1 cut(s) 501
BshFI GGCC 5 cut(s) 152, 255, 414, 528, 847
BshNI GGYRCC 2 cut(s) 269, 628
BsiHKAI GWGCWC 1 cut(s) 746
BsiSI CCGG 7 cut(s) 222, 267, 273, 407, 415, 428, 558
BslFI GGGAC 3 cut(s) 229, 601, 790
BslI CCNNNNNNNGG 3 cut(s) 183, 535, 597
BsmAI GTCTC 1 cut(s) 304
BsmFI GGGAC 3 cut(s) 229, 601, 790
BsnI GGCC 5 cut(s) 152, 255, 414, 528, 847
Bsp119I TTCGAA 1 cut(s) 854
Bsp1286I GDGCHC 2 cut(s) 407, 746
BspACI CCGC 2 cut(s) 252, 525
BspANI GGCC 5 cut(s) 152, 255, 414, 528, 847
BspCNI CTCAG 1 cut(s) 147
BspFNI CGCG 1 cut(s) 501
BspLI GGNNCC 5 cut(s) 163, 188, 271, 589, 630
BspT104I TTCGAA 1 cut(s) 854
BspT107I GGYRCC 2 cut(s) 269, 628
BsrFI RCCGGY 2 cut(s) 272, 427
BsrI ACTGG 4 cut(s) 188, 381, 526, 708
BssAI RCCGGY 2 cut(s) 272, 427
BssECI CCNNGG 3 cut(s) 247, 444, 635
BssNI GRCGYC 1 cut(s) 539
Bst2UI CCWGG 3 cut(s) 445, 636, 825
Bst4CI ACNGT 3 cut(s) 346, 441, 884
BstACI GRCGYC 1 cut(s) 539
BstBAI YACGTR 1 cut(s) 8
BstBI TTCGAA 1 cut(s) 854
BstC8I GCNNGC 1 cut(s) 274
BstDEI CTNAG 1 cut(s) 155
BstDSI CCRYGG 1 cut(s) 247
BstFNI CGCG 1 cut(s) 501
BstHHI GCGC 1 cut(s) 503
BstMAI GTCTC 1 cut(s) 304
BstMWI GCNNNNNNNGC 5 cut(s) 359, 411, 661, 667, 820
BstNI CCWGG 3 cut(s) 445, 636, 825
BstSCI CCNGG 6 cut(s) 405, 414, 443, 556, 634, 823
BstSFI CTRYAG 1 cut(s) 650
BstUI CGCG 1 cut(s) 501
BstV1I GCAGC 6 cut(s) 346, 349, 459, 523, 673, 832
BstXI CCANNNNNNTGG 1 cut(s) 772
BsuRI GGCC 5 cut(s) 152, 255, 414, 528, 847
BtgI CCRYGG 1 cut(s) 247
BtsI GCAGTG 2 cut(s) 315, 486
BtsIMutI CAGTG 6 cut(s) 315, 486, 519, 627, 689, 715
Cac8I GCNNGC 1 cut(s) 274
CaiI CAGNNNCTG 2 cut(s) 183, 356
CfoI GCGC 1 cut(s) 503
Cfr10I RCCGGY 2 cut(s) 272, 427
Cfr13I GGNCC 5 cut(s) 151, 430, 441, 527, 588
CpoI CGGWCCG 1 cut(s) 430
CseI GACGC 1 cut(s) 528
Csp6I GTAC 2 cut(s) 534, 640
CspI CGGWCCG 1 cut(s) 430
CviAII CATG 3 cut(s) 166, 719, 772
CviQI GTAC 2 cut(s) 534, 640
DdeI CTNAG 1 cut(s) 155
DrdI GACNNNNNNGTC 1 cut(s) 296
DseDI GACNNNNNNGTC 1 cut(s) 296
EaeI YGGCCR 1 cut(s) 253
Ecl136II GAGCTC 1 cut(s) 744
Eco147I AGGCCT 1 cut(s) 847
Eco24I GRGCYC 2 cut(s) 407, 746
Eco47I GGWCC 3 cut(s) 430, 441, 588
Eco53kI GAGCTC 1 cut(s) 744
Eco57I CTGAAG 2 cut(s) 603, 641
Eco72I CACGTG 1 cut(s) 8
EcoICRI GAGCTC 1 cut(s) 744
EcoRI GAATTC 1 cut(s) 856
EcoRII CCWGG 3 cut(s) 443, 634, 823
EcoT38I GRGCYC 2 cut(s) 407, 746
FaeI CATG 3 cut(s) 169, 722, 775
FaiI YATR 9 cut(s) 53, 55, 57, 78, 149, 167, 506, 720, 773
FalI AAGNNNNNCTT 2 cut(s) 10, 42
FaqI GGGAC 3 cut(s) 229, 601, 790
FatI CATG 3 cut(s) 165, 718, 771
Fnu4HI GCNGC 8 cut(s) 253, 360, 363, 473, 512, 526, 662, 821
FriOI GRGCYC 2 cut(s) 407, 746
Fsp4HI GCNGC 8 cut(s) 253, 360, 363, 473, 512, 526, 662, 821
GlaI GCGC 1 cut(s) 502
GluI GCNGC 8 cut(s) 253, 360, 363, 473, 512, 526, 662, 821
GsaI CCCAGC 3 cut(s) 180, 378, 556
GsuI CTGGAG 1 cut(s) 364
HaeIII GGCC 5 cut(s) 152, 255, 414, 528, 847
HapII CCGG 7 cut(s) 222, 267, 273, 407, 415, 428, 558
HgaI GACGC 1 cut(s) 528
HhaI GCGC 1 cut(s) 503
Hin1I GRCGYC 1 cut(s) 539
Hin1II CATG 3 cut(s) 169, 722, 775
Hin6I GCGC 1 cut(s) 501
HinP1I GCGC 1 cut(s) 501
HinfI GANTC 1 cut(s) 370
HpaII CCGG 7 cut(s) 222, 267, 273, 407, 415, 428, 558
HphI GGTGA 1 cut(s) 316
Hpy166II GTNNAC 4 cut(s) 128, 519, 546, 607
Hpy188I TCNGA 5 cut(s) 24, 434, 581, 732, 793
Hpy188III TCNNGA 5 cut(s) 42, 205, 287, 308, 453
Hpy8I GTNNAC 4 cut(s) 128, 519, 546, 607
Hpy99I CGWCG 1 cut(s) 544
HpyAV CCTTC 3 cut(s) 48, 93, 404
HpyCH4III ACNGT 3 cut(s) 346, 441, 884
HpyCH4IV ACGT 2 cut(s) 7, 201
HpyCH4V TGCA 4 cut(s) 365, 511, 563, 814
HpyF10VI GCNNNNNNNGC 5 cut(s) 359, 411, 661, 667, 820
HpyF3I CTNAG 1 cut(s) 155
HpySE526I ACGT 2 cut(s) 7, 201
Hsp92I GRCGYC 1 cut(s) 539
Hsp92II CATG 3 cut(s) 169, 722, 775
HspAI GCGC 1 cut(s) 501
KroI GCCGGC 1 cut(s) 272
KroNI GCCGGC 1 cut(s) 274
LmnI GCTCC 3 cut(s) 192, 383, 876
Lsp1109I GCAGC 6 cut(s) 346, 349, 459, 523, 673, 832
MaeII ACGT 2 cut(s) 7, 201
MaeIII GTNAC 4 cut(s) 8, 322, 346, 383
MboII GAAGA 2 cut(s) 468, 780
MhlI GDGCHC 2 cut(s) 407, 746
MluCI AATT 3 cut(s) 568, 850, 856
MmeI TCCRAC 2 cut(s) 195, 814
MnlI CCTC 5 cut(s) 70, 227, 242, 274, 871
MroNI GCCGGC 1 cut(s) 272
MseI TTAA 1 cut(s) 737
MslI CAYNNNNRTG 1 cut(s) 770
MspI CCGG 7 cut(s) 222, 267, 273, 407, 415, 428, 558
MspR9I CCNGG 6 cut(s) 407, 416, 445, 558, 636, 825
MvaI CCWGG 3 cut(s) 445, 636, 825
MvnI CGCG 1 cut(s) 501
MwoI GCNNNNNNNGC 5 cut(s) 359, 411, 661, 667, 820
NaeI GCCGGC 1 cut(s) 274
NciI CCSGG 3 cut(s) 407, 416, 558
NgoMIV GCCGGC 1 cut(s) 272
NlaIII CATG 3 cut(s) 169, 722, 775
NlaIV GGNNCC 5 cut(s) 163, 188, 271, 589, 630
NmuCI GTSAC 2 cut(s) 8, 322
NspV TTCGAA 1 cut(s) 854
PceI AGGCCT 1 cut(s) 847
PdiI GCCGGC 1 cut(s) 274
PfeI GAWTC 1 cut(s) 370
PflMI CCANNNNNTGG 1 cut(s) 183
PkrI GCNGC 8 cut(s) 254, 361, 364, 474, 513, 527, 663, 822
PmaCI CACGTG 1 cut(s) 8
PmlI CACGTG 1 cut(s) 8
Ppu21I YACGTR 1 cut(s) 8
PshBI ATTAAT 1 cut(s) 737
Psp124BI GAGCTC 1 cut(s) 746
Psp6I CCWGG 3 cut(s) 443, 634, 823
PspCI CACGTG 1 cut(s) 8
PspFI CCCAGC 3 cut(s) 176, 374, 552
PspGI CCWGG 3 cut(s) 443, 634, 823
PspN4I GGNNCC 5 cut(s) 163, 188, 271, 589, 630
PspPI GGNCC 5 cut(s) 151, 430, 441, 527, 588
PstNI CAGNNNCTG 2 cut(s) 183, 356
RsaI GTAC 2 cut(s) 535, 641
RsaNI GTAC 2 cut(s) 534, 640
RseI CAYNNNNRTG 1 cut(s) 770
Rsr2I CGGWCCG 1 cut(s) 430
RsrII CGGWCCG 1 cut(s) 430
SacI GAGCTC 1 cut(s) 746
SaqAI TTAA 1 cut(s) 737
SatI GCNGC 8 cut(s) 253, 360, 363, 473, 512, 526, 662, 821
Sau96I GGNCC 5 cut(s) 151, 430, 441, 527, 588
ScrFI CCNGG 6 cut(s) 407, 416, 445, 558, 636, 825
SduI GDGCHC 2 cut(s) 407, 746
SfcI CTRYAG 1 cut(s) 650
SfuI TTCGAA 1 cut(s) 854
SinI GGWCC 3 cut(s) 430, 441, 588
SmiMI CAYNNNNRTG 1 cut(s) 770
SmlI CTYRAG 1 cut(s) 400
SmoI CTYRAG 1 cut(s) 400
Sse9I AATT 3 cut(s) 568, 850, 856
SseBI AGGCCT 1 cut(s) 847
SsiI CCGC 2 cut(s) 252, 525
SstI GAGCTC 1 cut(s) 746
StuI AGGCCT 1 cut(s) 847
StyD4I CCNGG 6 cut(s) 405, 414, 443, 556, 634, 823
TaaI ACNGT 3 cut(s) 346, 441, 884
TaiI ACGT 2 cut(s) 10, 204
TaqI TCGA 1 cut(s) 854
TaqII GACCGA 1 cut(s) 272
TasI AATT 3 cut(s) 568, 850, 856
TauI GCSGC 2 cut(s) 255, 528
TfiI GAWTC 1 cut(s) 370
Tru1I TTAA 1 cut(s) 737
Tru9I TTAA 1 cut(s) 737
TscAI CASTG 6 cut(s) 322, 493, 526, 627, 696, 715
TseFI GTSAC 2 cut(s) 8, 322
TseI GCWGC 6 cut(s) 359, 362, 472, 511, 661, 820
Tsp45I GTSAC 2 cut(s) 8, 322
TspDTI ATGAA 1 cut(s) 771
TspGWI ACGGA 1 cut(s) 113
TspRI CASTG 6 cut(s) 322, 493, 526, 627, 696, 715
Van91I CCANNNNNTGG 1 cut(s) 183
VpaK11BI GGWCC 3 cut(s) 430, 441, 588
VspI ATTAAT 1 cut(s) 737
XapI RAATTY 1 cut(s) 856
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.