Rmu_sc0003976.1_g000009

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003976.1
OG0015164
Physical Location & Seq
Forward (+)
32924 .. 33655
732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003976.1_g000009.1.cds

Sequence Viewer

Length: 732 bp
atgtccaaccccagcgactggctccaatactacaacgtccagaacaacaccctctccggtcaagccctccctttgtcgtcccacggcggccacttgtcctccggtaccggcttgttcggtcaagaccaagctgtctctcatcacgaagccactgccgtcaccaccaccaccaccaccaccgttacagcttctgctgctgcaccgaatcccagctccagtaacaacaccaacagcttgagcccggaaggccgggtttccaagccggtccgaaaacggtccagggcttccagaagaacccccaccacgctgctcaacaccgacactgcgaactttcgcgctatggtgcagcagttcactggcggcccaagtacggcgtcgtttaccacccagcccggtgcaaccaatttcagtttcggacttgggaccagacaagggtttgtgaaccctaatgcttcagtgatggtgccacctgggtacaaccatctacagcttcagcagcaacagcaaaacccgtatctgctttcactgaacaacaataataccagtgataatcatgggtttgttcagagattaatgagctcgtcatcatcggcaagacccacaaacatgggggtttcattttcttctgatgagttttcgtcccaagtgcaagggcagcctggtctggttggaagtggtaggcctaattcgaattcctccaatgagaacaggagcaacagtttcttgtattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

243

Amino Acids

25.85

Weight (kDa)

10.09

Isoelectric Point (pI)

44.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015164)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22160 AT4G15120
fragaria_vesca FvH4_6g39500
prunus_persica Prupe.3G185800_v2.0.a1
pyrus_communis pycom09g06070 pycom17g12150
rosa_chinensis RchiOBHm_Chr2g0153531
rosa_laevigata RLG00000020707
rosa_multiflora Rmu_sc0003976.1_g000009
rosa_roxburghii Rroxscaffold_2G00094950
rosa_rugosa Rorug02G0439000
rosa_samantha Rh2AG503000 Rh2BG513700 Rh2CG488800 Rh2DG525400
rosa_wichuraiana Rw2G041290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 131
Acc65I GGTACC 1 cut(s) 104
AccB1I GGYRCC 2 cut(s) 104, 463
AccB7I CCANNNNNTGG 1 cut(s) 18
AccII CGCG 1 cut(s) 336
AciI CCGC 2 cut(s) 87, 360
AcoI YGGCCR 1 cut(s) 88
AcsI RAATTY 1 cut(s) 691
AcuI CTGAAG 2 cut(s) 438, 476
AcyI GRCGYC 1 cut(s) 374
AfaI GTAC 3 cut(s) 106, 370, 476
AfiI CCNNNNNNNGG 3 cut(s) 18, 370, 432
AjnI CCWGG 3 cut(s) 278, 469, 658
AjuI GAANNNNNNNTTGG 2 cut(s) 395, 427
AluBI AGCT 6 cut(s) 131, 188, 213, 234, 490, 579
AluI AGCT 6 cut(s) 131, 188, 213, 234, 490, 579
Alw21I GWGCWC 1 cut(s) 581
Alw26I GTCTC 1 cut(s) 139
AlwNI CAGNNNCTG 2 cut(s) 18, 191
AoxI GGCC 4 cut(s) 88, 247, 361, 680
ApeKI GCWGC 6 cut(s) 194, 197, 307, 346, 496, 655
ApoI RAATTY 1 cut(s) 691
AseI ATTAAT 1 cut(s) 572
Asp718I GGTACC 1 cut(s) 104
AspLEI GCGC 1 cut(s) 338
AspS9I GGNCC 4 cut(s) 265, 276, 362, 423
AsuC2I CCSGG 3 cut(s) 242, 251, 393
AsuHPI GGTGA 1 cut(s) 151
AsuII TTCGAA 1 cut(s) 689
AvaII GGWCC 3 cut(s) 265, 276, 423
BanI GGYRCC 2 cut(s) 104, 463
BanII GRGCYC 2 cut(s) 242, 581
Bbv12I GWGCWC 1 cut(s) 581
BbvI GCAGC 6 cut(s) 181, 184, 294, 358, 508, 667
BccI CCATC 2 cut(s) 454, 489
BceAI ACGGC 3 cut(s) 100, 140, 387
BcgI CGANNNNNNTGC 2 cut(s) 134, 168
BciT130I CCWGG 3 cut(s) 280, 471, 660
BcnI CCSGG 3 cut(s) 242, 251, 393
BcoDI GTCTC 1 cut(s) 139
BfmI CTRYAG 1 cut(s) 485
BglI GCCNNNNNGGC 1 cut(s) 246
BisI GCNGC 8 cut(s) 88, 195, 198, 308, 347, 361, 497, 656
BlsI GCNGC 8 cut(s) 89, 196, 199, 309, 348, 362, 498, 657
Bme1390I CCNGG 6 cut(s) 242, 251, 280, 393, 471, 660
Bme18I GGWCC 3 cut(s) 265, 276, 423
BmgT120I GGNCC 4 cut(s) 265, 276, 362, 423
BmiI GGNNCC 4 cut(s) 23, 106, 424, 465
BmrFI CCNGG 6 cut(s) 242, 251, 280, 393, 471, 660
BpmI CTGGAG 1 cut(s) 199
Bpu14I TTCGAA 1 cut(s) 689
BpuEI CTTGAG 1 cut(s) 256
BpuMI CCSGG 3 cut(s) 242, 251, 393
BsaHI GRCGYC 1 cut(s) 374
BsaJI CCNNGG 3 cut(s) 82, 279, 470
BsaWI WCCGGW 2 cut(s) 56, 101
BsaXI ACNNNNNCTCC 5 cut(s) 38, 68, 83, 113, 703
Bsc4I CCNNNNNNNGG 3 cut(s) 18, 370, 432
Bse118I RCCGGY 2 cut(s) 107, 262
Bse1I ACTGG 4 cut(s) 23, 216, 361, 543
BseBI CCWGG 3 cut(s) 280, 471, 660
BseDI CCNNGG 3 cut(s) 82, 279, 470
BseLI CCNNNNNNNGG 3 cut(s) 18, 370, 432
BseNI ACTGG 4 cut(s) 23, 216, 361, 543
BseXI GCAGC 6 cut(s) 181, 184, 294, 358, 508, 667
BseYI CCCAGC 3 cut(s) 11, 209, 387
BsgI GTGCAG 2 cut(s) 183, 365
Bsh1236I CGCG 1 cut(s) 336
BshFI GGCC 4 cut(s) 90, 249, 363, 682
BshNI GGYRCC 2 cut(s) 104, 463
BsiHKAI GWGCWC 1 cut(s) 581
BsiSI CCGG 7 cut(s) 57, 102, 108, 242, 250, 263, 393
BslFI GGGAC 3 cut(s) 64, 436, 625
BslI CCNNNNNNNGG 3 cut(s) 18, 370, 432
BsmAI GTCTC 1 cut(s) 139
BsmFI GGGAC 3 cut(s) 64, 436, 625
BsnI GGCC 4 cut(s) 90, 249, 363, 682
Bsp119I TTCGAA 1 cut(s) 689
Bsp1286I GDGCHC 2 cut(s) 242, 581
BspACI CCGC 2 cut(s) 87, 360
BspANI GGCC 4 cut(s) 90, 249, 363, 682
BspFNI CGCG 1 cut(s) 336
BspLI GGNNCC 4 cut(s) 23, 106, 424, 465
BspT104I TTCGAA 1 cut(s) 689
BspT107I GGYRCC 2 cut(s) 104, 463
BsrFI RCCGGY 2 cut(s) 107, 262
BsrI ACTGG 4 cut(s) 23, 216, 361, 543
BssAI RCCGGY 2 cut(s) 107, 262
BssECI CCNNGG 3 cut(s) 82, 279, 470
BssNI GRCGYC 1 cut(s) 374
Bst2UI CCWGG 3 cut(s) 280, 471, 660
Bst4CI ACNGT 3 cut(s) 181, 276, 719
BstACI GRCGYC 1 cut(s) 374
BstBI TTCGAA 1 cut(s) 689
BstDSI CCRYGG 1 cut(s) 82
BstFNI CGCG 1 cut(s) 336
BstHHI GCGC 1 cut(s) 338
BstMAI GTCTC 1 cut(s) 139
BstMWI GCNNNNNNNGC 5 cut(s) 194, 246, 496, 502, 655
BstNI CCWGG 3 cut(s) 280, 471, 660
BstSCI CCNGG 6 cut(s) 240, 249, 278, 391, 469, 658
BstSFI CTRYAG 1 cut(s) 485
BstUI CGCG 1 cut(s) 336
BstV1I GCAGC 6 cut(s) 181, 184, 294, 358, 508, 667
BstXI CCANNNNNNTGG 1 cut(s) 607
BsuRI GGCC 4 cut(s) 90, 249, 363, 682
BtgI CCRYGG 1 cut(s) 82
BtsI GCAGTG 2 cut(s) 150, 321
BtsIMutI CAGTG 6 cut(s) 150, 321, 354, 462, 524, 550
CaiI CAGNNNCTG 2 cut(s) 18, 191
CfoI GCGC 1 cut(s) 338
Cfr10I RCCGGY 2 cut(s) 107, 262
Cfr13I GGNCC 4 cut(s) 265, 276, 362, 423
CpoI CGGWCCG 1 cut(s) 265
CseI GACGC 1 cut(s) 363
Csp6I GTAC 3 cut(s) 105, 369, 475
CspI CGGWCCG 1 cut(s) 265
CviAII CATG 2 cut(s) 554, 607
CviQI GTAC 3 cut(s) 105, 369, 475
DrdI GACNNNNNNGTC 1 cut(s) 131
DseDI GACNNNNNNGTC 1 cut(s) 131
EaeI YGGCCR 1 cut(s) 88
Ecl136II GAGCTC 1 cut(s) 579
Eco147I AGGCCT 1 cut(s) 682
Eco24I GRGCYC 2 cut(s) 242, 581
Eco47I GGWCC 3 cut(s) 265, 276, 423
Eco53kI GAGCTC 1 cut(s) 579
Eco57I CTGAAG 2 cut(s) 438, 476
EcoICRI GAGCTC 1 cut(s) 579
EcoRI GAATTC 1 cut(s) 691
EcoRII CCWGG 3 cut(s) 278, 469, 658
EcoT38I GRGCYC 2 cut(s) 242, 581
FaeI CATG 2 cut(s) 557, 610
FaiI YATR 3 cut(s) 341, 555, 608
FaqI GGGAC 3 cut(s) 64, 436, 625
FatI CATG 2 cut(s) 553, 606
Fnu4HI GCNGC 8 cut(s) 88, 195, 198, 308, 347, 361, 497, 656
FriOI GRGCYC 2 cut(s) 242, 581
Fsp4HI GCNGC 8 cut(s) 88, 195, 198, 308, 347, 361, 497, 656
GlaI GCGC 1 cut(s) 337
GluI GCNGC 8 cut(s) 88, 195, 198, 308, 347, 361, 497, 656
GsaI CCCAGC 3 cut(s) 15, 213, 391
GsuI CTGGAG 1 cut(s) 199
HaeIII GGCC 4 cut(s) 90, 249, 363, 682
HapII CCGG 7 cut(s) 57, 102, 108, 242, 250, 263, 393
HgaI GACGC 1 cut(s) 363
HhaI GCGC 1 cut(s) 338
Hin1I GRCGYC 1 cut(s) 374
Hin1II CATG 2 cut(s) 557, 610
Hin6I GCGC 1 cut(s) 336
HinP1I GCGC 1 cut(s) 336
HinfI GANTC 1 cut(s) 205
HpaII CCGG 7 cut(s) 57, 102, 108, 242, 250, 263, 393
HphI GGTGA 1 cut(s) 151
Hpy166II GTNNAC 3 cut(s) 354, 381, 442
Hpy188I TCNGA 4 cut(s) 269, 416, 567, 628
Hpy188III TCNNGA 4 cut(s) 40, 122, 143, 288
Hpy8I GTNNAC 3 cut(s) 354, 381, 442
Hpy99I CGWCG 1 cut(s) 379
HpyAV CCTTC 1 cut(s) 239
HpyCH4III ACNGT 3 cut(s) 181, 276, 719
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 4 cut(s) 200, 346, 398, 649
HpyF10VI GCNNNNNNNGC 5 cut(s) 194, 246, 496, 502, 655
HpySE526I ACGT 1 cut(s) 36
Hsp92I GRCGYC 1 cut(s) 374
Hsp92II CATG 2 cut(s) 557, 610
HspAI GCGC 1 cut(s) 336
KpnI GGTACC 1 cut(s) 108
LmnI GCTCC 3 cut(s) 27, 218, 711
Lsp1109I GCAGC 6 cut(s) 181, 184, 294, 358, 508, 667
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 3 cut(s) 157, 181, 218
MboII GAAGA 2 cut(s) 303, 615
MhlI GDGCHC 2 cut(s) 242, 581
MluCI AATT 3 cut(s) 403, 685, 691
MmeI TCCRAC 2 cut(s) 30, 649
MnlI CCTC 4 cut(s) 62, 77, 109, 706
MseI TTAA 1 cut(s) 572
MslI CAYNNNNRTG 1 cut(s) 605
MspI CCGG 7 cut(s) 57, 102, 108, 242, 250, 263, 393
MspR9I CCNGG 6 cut(s) 242, 251, 280, 393, 471, 660
MvaI CCWGG 3 cut(s) 280, 471, 660
MvnI CGCG 1 cut(s) 336
MwoI GCNNNNNNNGC 5 cut(s) 194, 246, 496, 502, 655
NciI CCSGG 3 cut(s) 242, 251, 393
NlaIII CATG 2 cut(s) 557, 610
NlaIV GGNNCC 4 cut(s) 23, 106, 424, 465
NmuCI GTSAC 1 cut(s) 157
NspV TTCGAA 1 cut(s) 689
PceI AGGCCT 1 cut(s) 682
PfeI GAWTC 1 cut(s) 205
PflMI CCANNNNNTGG 1 cut(s) 18
PkrI GCNGC 8 cut(s) 89, 196, 199, 309, 348, 362, 498, 657
PshBI ATTAAT 1 cut(s) 572
Psp124BI GAGCTC 1 cut(s) 581
Psp6I CCWGG 3 cut(s) 278, 469, 658
PspFI CCCAGC 3 cut(s) 11, 209, 387
PspGI CCWGG 3 cut(s) 278, 469, 658
PspN4I GGNNCC 4 cut(s) 23, 106, 424, 465
PspPI GGNCC 4 cut(s) 265, 276, 362, 423
PstNI CAGNNNCTG 2 cut(s) 18, 191
RsaI GTAC 3 cut(s) 106, 370, 476
RsaNI GTAC 3 cut(s) 105, 369, 475
RseI CAYNNNNRTG 1 cut(s) 605
Rsr2I CGGWCCG 1 cut(s) 265
RsrII CGGWCCG 1 cut(s) 265
SacI GAGCTC 1 cut(s) 581
SaqAI TTAA 1 cut(s) 572
SatI GCNGC 8 cut(s) 88, 195, 198, 308, 347, 361, 497, 656
Sau96I GGNCC 4 cut(s) 265, 276, 362, 423
ScrFI CCNGG 6 cut(s) 242, 251, 280, 393, 471, 660
SduI GDGCHC 2 cut(s) 242, 581
SetI ASST 8 cut(s) 39, 133, 190, 215, 236, 472, 492, 581
SfcI CTRYAG 1 cut(s) 485
SfuI TTCGAA 1 cut(s) 689
SinI GGWCC 3 cut(s) 265, 276, 423
SmiMI CAYNNNNRTG 1 cut(s) 605
SmlI CTYRAG 1 cut(s) 235
SmoI CTYRAG 1 cut(s) 235
Sse9I AATT 3 cut(s) 403, 685, 691
SseBI AGGCCT 1 cut(s) 682
SsiI CCGC 2 cut(s) 87, 360
SstI GAGCTC 1 cut(s) 581
StuI AGGCCT 1 cut(s) 682
StyD4I CCNGG 6 cut(s) 240, 249, 278, 391, 469, 658
TaaI ACNGT 3 cut(s) 181, 276, 719
TaiI ACGT 1 cut(s) 39
TaqI TCGA 1 cut(s) 689
TaqII GACCGA 1 cut(s) 107
TasI AATT 3 cut(s) 403, 685, 691
TauI GCSGC 2 cut(s) 90, 363
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 1 cut(s) 572
Tru9I TTAA 1 cut(s) 572
TscAI CASTG 6 cut(s) 157, 328, 361, 462, 531, 550
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 6 cut(s) 194, 197, 307, 346, 496, 655
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 1 cut(s) 606
TspRI CASTG 6 cut(s) 157, 328, 361, 462, 531, 550
Van91I CCANNNNNTGG 1 cut(s) 18
VpaK11BI GGWCC 3 cut(s) 265, 276, 423
VspI ATTAAT 1 cut(s) 572
XapI RAATTY 1 cut(s) 691
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.