FvH4_6g39500

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015164
Physical Location & Seq
Reverse (-)
31182931 .. 31183656
726 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g39500.t1

Sequence Viewer

Length: 726 bp
ATGTCCAACCCCACCGACTGGCTCCAGTTCTACAACCTCCAGAACAACACCCTCTCCGGCCAGGCCCTCCCCTTGTCCTCCCACGGCGCCGGCATGTTCGGTCAAGACCAAGCTGCAGCTTCCCAGCACGAAGCAACTGTCGTCACCACCACCGCTACTGCATCTGCTTCTGCTGCTGCACCAAGTAACAACACCAACAGCTTGAGCCCGGAAGGCCGGGTTTCGAAGCCGGTCCGGAAGCGGTCCAGGGCTTCCAGAAGAACACCCACCACCCTGCTGAACACTGATACTGCCAACTTCCGCGCCATGGTGCAGCAGTTCACTGGCGGCCCGAGTACGGCGTCCTTTACAACCCCGCCTACTGGTGCAGCCAATTTCGGTTTCGGACTTGGGGCCAGACAGCAAGGGTTTGTGAACCCTAATGCTTCAGTGATGGTGCCGCCACCTGGGTACAATCATCTACAGCTTCAGCAGCAACAGCAAAACCCGTATCTTCTTTCACTGAACAACAATAATAACAACAGTAGTGAGAATCATCAAGGGTTTGTTCAGAGATTAATGAGCTCGTCGTCATCATCGGCAGCACGACCTACGGCAAACATGGGGGTTTCGTTTTCTTCTGATGAGTTTGCGTCCCAAGTGCAAGGGCAGCCGAGTCTGGTTGGAAGTGGTAGGCCTAATTCGAACTCCTCCAATGAGAACCGGAGCAACAGTTTCTTGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

242

Amino Acids

25.52

Weight (kDa)

10.24

Isoelectric Point (pI)

50.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 88 - 113 5.4e-10 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015164)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22160 AT4G15120
fragaria_vesca FvH4_6g39500
prunus_persica Prupe.3G185800_v2.0.a1
pyrus_communis pycom09g06070 pycom17g12150
rosa_chinensis RchiOBHm_Chr2g0153531
rosa_laevigata RLG00000020707
rosa_multiflora Rmu_sc0003976.1_g000009
rosa_roxburghii Rroxscaffold_2G00094950
rosa_rugosa Rorug02G0439000
rosa_samantha Rh2AG503000 Rh2BG513700 Rh2CG488800 Rh2DG525400
rosa_wichuraiana Rw2G041290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 86, 436
AccB7I CCANNNNNTGG 1 cut(s) 18
AccII CGCG 1 cut(s) 303
AccIII TCCGGA 1 cut(s) 234
AciI CCGC 6 cut(s) 153, 241, 301, 327, 356, 440
AcoI YGGCCR 1 cut(s) 58
AcuI CTGAAG 2 cut(s) 411, 452
AcyI GRCGYC 2 cut(s) 87, 341
AfaI GTAC 2 cut(s) 337, 452
AfiI CCNNNNNNNGG 5 cut(s) 18, 307, 337, 362, 446
AjnI CCWGG 3 cut(s) 60, 245, 445
AjuI GAANNNNNNNTTGG 2 cut(s) 365, 397
AluBI AGCT 5 cut(s) 113, 119, 201, 466, 564
AluI AGCT 5 cut(s) 113, 119, 201, 466, 564
Alw21I GWGCWC 1 cut(s) 566
Ama87I CYCGRG 1 cut(s) 331
Aor13HI TCCGGA 1 cut(s) 234
AoxI GGCC 6 cut(s) 58, 63, 214, 328, 393, 674
ApeKI GCWGC 9 cut(s) 113, 116, 173, 176, 313, 368, 472, 581, 649
ArsI GACNNNNNNTTYG 2 cut(s) 123, 155
AseI ATTAAT 1 cut(s) 557
AspLEI GCGC 2 cut(s) 89, 305
AspS9I GGNCC 5 cut(s) 64, 232, 243, 329, 393
AsuC2I CCSGG 2 cut(s) 209, 218
AsuHPI GGTGA 1 cut(s) 136
AsuII TTCGAA 2 cut(s) 224, 683
AvaI CYCGRG 1 cut(s) 331
AvaII GGWCC 2 cut(s) 232, 243
BanI GGYRCC 2 cut(s) 86, 436
BanII GRGCYC 2 cut(s) 209, 566
Bbv12I GWGCWC 1 cut(s) 566
BbvI GCAGC 9 cut(s) 100, 128, 160, 163, 325, 380, 484, 593, 661
BccI CCATC 1 cut(s) 427
BceAI ACGGC 3 cut(s) 100, 354, 609
BciT130I CCWGG 3 cut(s) 62, 247, 447
BcnI CCSGG 2 cut(s) 209, 218
BfmI CTRYAG 2 cut(s) 114, 461
BfoI RGCGCY 1 cut(s) 90
BglI GCCNNNNNGGC 1 cut(s) 213
Bme1390I CCNGG 5 cut(s) 62, 209, 218, 247, 447
Bme18I GGWCC 2 cut(s) 232, 243
BmeT110I CYCGRG 1 cut(s) 331
BmgT120I GGNCC 5 cut(s) 64, 232, 243, 329, 393
BmiI GGNNCC 4 cut(s) 23, 88, 394, 438
BmrFI CCNGG 5 cut(s) 62, 209, 218, 247, 447
BmsI GCATC 1 cut(s) 170
BpmI CTGGAG 2 cut(s) 8, 23
Bpu14I TTCGAA 2 cut(s) 224, 683
BpuEI CTTGAG 1 cut(s) 223
BpuMI CCSGG 2 cut(s) 209, 218
BsaHI GRCGYC 2 cut(s) 87, 341
BsaJI CCNNGG 4 cut(s) 82, 246, 306, 446
BsaWI WCCGGW 2 cut(s) 234, 702
BsaXI ACNNNNNCTCC 3 cut(s) 38, 68, 697
Bsc4I CCNNNNNNNGG 5 cut(s) 18, 307, 337, 362, 446
Bse118I RCCGGY 2 cut(s) 89, 229
Bse1I ACTGG 4 cut(s) 23, 25, 328, 367
BseAI TCCGGA 1 cut(s) 234
BseBI CCWGG 3 cut(s) 62, 247, 447
BseDI CCNNGG 4 cut(s) 82, 246, 306, 446
BseLI CCNNNNNNNGG 5 cut(s) 18, 307, 337, 362, 446
BseNI ACTGG 4 cut(s) 23, 25, 328, 367
BseRI GAGGAG 1 cut(s) 679
BseXI GCAGC 9 cut(s) 100, 128, 160, 163, 325, 380, 484, 593, 661
BseYI CCCAGC 1 cut(s) 123
BsgI GTGCAG 3 cut(s) 162, 332, 387
Bsh1236I CGCG 1 cut(s) 303
BshFI GGCC 6 cut(s) 60, 65, 216, 330, 395, 676
BshNI GGYRCC 2 cut(s) 86, 436
BsiHKAI GWGCWC 1 cut(s) 566
BsiHKCI CYCGRG 1 cut(s) 331
BsiSI CCGG 7 cut(s) 57, 90, 209, 217, 230, 235, 703
BslFI GGGAC 1 cut(s) 619
BslI CCNNNNNNNGG 5 cut(s) 18, 307, 337, 362, 446
BsmFI GGGAC 1 cut(s) 619
BsnI GGCC 6 cut(s) 60, 65, 216, 330, 395, 676
BsoBI CYCGRG 1 cut(s) 331
Bsp119I TTCGAA 2 cut(s) 224, 683
Bsp1286I GDGCHC 2 cut(s) 209, 566
Bsp13I TCCGGA 1 cut(s) 234
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 6 cut(s) 153, 241, 301, 327, 356, 440
BspANI GGCC 6 cut(s) 60, 65, 216, 330, 395, 676
BspEI TCCGGA 1 cut(s) 234
BspFNI CGCG 1 cut(s) 303
BspLI GGNNCC 4 cut(s) 23, 88, 394, 438
BspMAI CTGCAG 1 cut(s) 118
BspT104I TTCGAA 2 cut(s) 224, 683
BspT107I GGYRCC 2 cut(s) 86, 436
BsrFI RCCGGY 2 cut(s) 89, 229
BsrI ACTGG 4 cut(s) 23, 25, 328, 367
BssAI RCCGGY 2 cut(s) 89, 229
BssECI CCNNGG 4 cut(s) 82, 246, 306, 446
BssNI GRCGYC 2 cut(s) 87, 341
BssT1I CCWWGG 1 cut(s) 306
Bst2UI CCWGG 3 cut(s) 62, 247, 447
Bst4CI ACNGT 3 cut(s) 139, 524, 713
BstACI GRCGYC 2 cut(s) 87, 341
BstBI TTCGAA 2 cut(s) 224, 683
BstC8I GCNNGC 1 cut(s) 91
BstDSI CCRYGG 2 cut(s) 82, 306
BstFNI CGCG 1 cut(s) 303
BstH2I RGCGCY 1 cut(s) 90
BstHHI GCGC 2 cut(s) 89, 305
BstMWI GCNNNNNNNGC 5 cut(s) 173, 213, 472, 478, 649
BstNI CCWGG 3 cut(s) 62, 247, 447
BstNSI RCATGY 1 cut(s) 97
BstSCI CCNGG 5 cut(s) 60, 207, 216, 245, 445
BstSFI CTRYAG 2 cut(s) 114, 461
BstUI CGCG 1 cut(s) 303
BstV1I GCAGC 9 cut(s) 100, 128, 160, 163, 325, 380, 484, 593, 661
BsuRI GGCC 6 cut(s) 60, 65, 216, 330, 395, 676
BtgI CCRYGG 2 cut(s) 82, 306
BtsIMutI CAGTG 4 cut(s) 282, 321, 435, 500
Cac8I GCNNGC 1 cut(s) 91
CfoI GCGC 2 cut(s) 89, 305
Cfr10I RCCGGY 2 cut(s) 89, 229
Cfr13I GGNCC 5 cut(s) 64, 232, 243, 329, 393
CpoI CGGWCCG 1 cut(s) 232
CseI GACGC 2 cut(s) 330, 621
Csp6I GTAC 2 cut(s) 336, 451
CspI CGGWCCG 1 cut(s) 232
CviAII CATG 3 cut(s) 94, 307, 601
CviQI GTAC 2 cut(s) 336, 451
DinI GGCGCC 1 cut(s) 88
EaeI YGGCCR 1 cut(s) 58
Ecl136II GAGCTC 1 cut(s) 564
Eco130I CCWWGG 1 cut(s) 306
Eco147I AGGCCT 1 cut(s) 676
Eco24I GRGCYC 2 cut(s) 209, 566
Eco47I GGWCC 2 cut(s) 232, 243
Eco53kI GAGCTC 1 cut(s) 564
Eco57I CTGAAG 2 cut(s) 411, 452
Eco88I CYCGRG 1 cut(s) 331
EcoICRI GAGCTC 1 cut(s) 564
EcoO109I RGGNCCY 1 cut(s) 64
EcoRII CCWGG 3 cut(s) 60, 245, 445
EcoT14I CCWWGG 1 cut(s) 306
EcoT38I GRGCYC 2 cut(s) 209, 566
EgeI GGCGCC 1 cut(s) 88
EheI GGCGCC 1 cut(s) 88
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 3 cut(s) 97, 310, 604
FaiI YATR 3 cut(s) 95, 308, 602
FaqI GGGAC 1 cut(s) 619
FatI CATG 3 cut(s) 93, 306, 600
FauI CCCGC 1 cut(s) 363
FriOI GRGCYC 2 cut(s) 209, 566
GlaI GCGC 2 cut(s) 88, 304
GsaI CCCAGC 1 cut(s) 127
GsuI CTGGAG 2 cut(s) 8, 23
HaeII RGCGCY 1 cut(s) 90
HaeIII GGCC 6 cut(s) 60, 65, 216, 330, 395, 676
HapII CCGG 7 cut(s) 57, 90, 209, 217, 230, 235, 703
HgaI GACGC 2 cut(s) 330, 621
HhaI GCGC 2 cut(s) 89, 305
Hin1I GRCGYC 2 cut(s) 87, 341
Hin1II CATG 3 cut(s) 97, 310, 604
Hin6I GCGC 2 cut(s) 87, 303
HinP1I GCGC 2 cut(s) 87, 303
HinfI GANTC 2 cut(s) 532, 655
HpaII CCGG 7 cut(s) 57, 90, 209, 217, 230, 235, 703
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 2 cut(s) 321, 415
Hpy188I TCNGA 3 cut(s) 386, 552, 622
Hpy188III TCNNGA 4 cut(s) 40, 104, 235, 255
Hpy8I GTNNAC 2 cut(s) 321, 415
Hpy99I CGWCG 1 cut(s) 571
HpyAV CCTTC 1 cut(s) 206
HpyCH4III ACNGT 3 cut(s) 139, 524, 713
HpyCH4V TGCA 6 cut(s) 116, 161, 179, 313, 368, 643
HpyF10VI GCNNNNNNNGC 5 cut(s) 173, 213, 472, 478, 649
Hsp92I GRCGYC 2 cut(s) 87, 341
Hsp92II CATG 3 cut(s) 97, 310, 604
HspAI GCGC 2 cut(s) 87, 303
KasI GGCGCC 1 cut(s) 86
Kpn2I TCCGGA 1 cut(s) 234
KroI GCCGGC 1 cut(s) 89
KroNI GCCGGC 1 cut(s) 91
LmnI GCTCC 2 cut(s) 27, 705
Lsp1109I GCAGC 9 cut(s) 100, 128, 160, 163, 325, 380, 484, 593, 661
LweI GCATC 1 cut(s) 170
MaeIII GTNAC 2 cut(s) 142, 185
MboII GAAGA 3 cut(s) 270, 485, 609
MhlI GDGCHC 2 cut(s) 209, 566
MluCI AATT 2 cut(s) 373, 679
Mly113I GGCGCC 1 cut(s) 87
MlyI GAGTC 1 cut(s) 664
MmeI TCCRAC 2 cut(s) 30, 643
MnlI CCTC 5 cut(s) 47, 62, 77, 88, 700
MroI TCCGGA 1 cut(s) 234
MroNI GCCGGC 1 cut(s) 89
MseI TTAA 1 cut(s) 557
MspI CCGG 7 cut(s) 57, 90, 209, 217, 230, 235, 703
MspR9I CCNGG 5 cut(s) 62, 209, 218, 247, 447
MvaI CCWGG 3 cut(s) 62, 247, 447
MvnI CGCG 1 cut(s) 303
MwoI GCNNNNNNNGC 5 cut(s) 173, 213, 472, 478, 649
NaeI GCCGGC 1 cut(s) 91
NarI GGCGCC 1 cut(s) 87
NciI CCSGG 2 cut(s) 209, 218
NcoI CCATGG 1 cut(s) 306
NgoMIV GCCGGC 1 cut(s) 89
NlaIII CATG 3 cut(s) 97, 310, 604
NlaIV GGNNCC 4 cut(s) 23, 88, 394, 438
NmeAIII GCCGAG 1 cut(s) 678
NmuCI GTSAC 1 cut(s) 142
NspI RCATGY 1 cut(s) 97
NspV TTCGAA 2 cut(s) 224, 683
PceI AGGCCT 1 cut(s) 676
PdiI GCCGGC 1 cut(s) 91
PfeI GAWTC 1 cut(s) 532
PflMI CCANNNNNTGG 1 cut(s) 18
PleI GAGTC 1 cut(s) 663
PluTI GGCGCC 1 cut(s) 90
PpsI GAGTC 1 cut(s) 663
PshBI ATTAAT 1 cut(s) 557
Psp124BI GAGCTC 1 cut(s) 566
Psp6I CCWGG 3 cut(s) 60, 245, 445
PspFI CCCAGC 1 cut(s) 123
PspGI CCWGG 3 cut(s) 60, 245, 445
PspN4I GGNNCC 4 cut(s) 23, 88, 394, 438
PspPI GGNCC 5 cut(s) 64, 232, 243, 329, 393
PstI CTGCAG 1 cut(s) 118
RsaI GTAC 2 cut(s) 337, 452
RsaNI GTAC 2 cut(s) 336, 451
Rsr2I CGGWCCG 1 cut(s) 232
RsrII CGGWCCG 1 cut(s) 232
SacI GAGCTC 1 cut(s) 566
SaqAI TTAA 1 cut(s) 557
Sau96I GGNCC 5 cut(s) 64, 232, 243, 329, 393
SchI GAGTC 1 cut(s) 664
ScrFI CCNGG 5 cut(s) 62, 209, 218, 247, 447
SduI GDGCHC 2 cut(s) 209, 566
SetI ASST 8 cut(s) 39, 115, 121, 203, 448, 468, 566, 592
SfaNI GCATC 1 cut(s) 170
SfcI CTRYAG 2 cut(s) 114, 461
SfoI GGCGCC 1 cut(s) 88
SfuI TTCGAA 2 cut(s) 224, 683
SinI GGWCC 2 cut(s) 232, 243
SmlI CTYRAG 1 cut(s) 202
SmoI CTYRAG 1 cut(s) 202
Sse9I AATT 2 cut(s) 373, 679
SseBI AGGCCT 1 cut(s) 676
SsiI CCGC 6 cut(s) 153, 241, 301, 327, 356, 440
SspDI GGCGCC 1 cut(s) 86
SstI GAGCTC 1 cut(s) 566
StuI AGGCCT 1 cut(s) 676
StyD4I CCNGG 5 cut(s) 60, 207, 216, 245, 445
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 3 cut(s) 139, 524, 713
TaqI TCGA 2 cut(s) 224, 683
TaqII GACCGA 1 cut(s) 89
TasI AATT 2 cut(s) 373, 679
TauI GCSGC 2 cut(s) 330, 442
TfiI GAWTC 1 cut(s) 532
Tru1I TTAA 1 cut(s) 557
Tru9I TTAA 1 cut(s) 557
TscAI CASTG 4 cut(s) 289, 328, 435, 507
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 9 cut(s) 113, 116, 173, 176, 313, 368, 472, 581, 649
Tsp45I GTSAC 1 cut(s) 142
TspRI CASTG 4 cut(s) 289, 328, 435, 507
Van91I CCANNNNNTGG 1 cut(s) 18
VpaK11BI GGWCC 2 cut(s) 232, 243
VspI ATTAAT 1 cut(s) 557
XceI RCATGY 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.