Rw2G041290

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0015164
Physical Location & Seq
Reverse (-)
67347671 .. 67348754
1084 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G041290.1

Sequence Viewer

Length: 747 bp
ATGGCCCTGAGTGGAACCATGTCCAACCCCAGCGACTGGCTCCAATACTACAACGTCCAGAACAACACCCTCTCCGGTCAAGCCCTCCCTTTGTCTTCCCACGGCGGCCACTTGTCCTCCGGTGCCGGCTTGTTCGGTCAAGACCAAGCTGTCTCTCATAACGAAGCCACTGCCGTCACCACCACCACCACCACCGTTACAGCTTCTGCTGCTGCACCGAATCCCAGCTCCAGTAACAACACCAACAGCTTGAGCCCGGAAGGCCGGGTTTCCAAGCCGGTTCGAAAACGGTCCAGGGCTTCCAGAAGAACCCCCACCACGCTGCTCAACACCGACACTGCGAACTTTCGCGCTATGGTGCAGCAGTTCACTGGCGGCCCAAGTACGGCGTCGTTTACCACCCAGCCCGGTGCAACCAATTTCAGTTTCGGACTTGGGACCAGACAAGGGTTTGTGAACCCTAATGCTTCAGTGATGGTGCCACCTGGGTACAACCATCTACAGCTTCAGCAGCAACAGCAAAACCCATATCTGCTTTCACTGAACAACAATAATACCAGTGATAATCATGGGTTTGTTCAGAGATTAATGAGCTCGTCATCATCGGCAAGACCCACAAACATGGGGGTTTCATTTTCTTCTGATGAGTTTTCGTCCCAAGTGCAAGGGCAGCCTAGTCTGGTTGGAAGTGGTAGGCCTAATTCGAATTCCTCCAATGAGAACAGGAGCAACAGTTTCTTGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

248

Amino Acids

26.29

Weight (kDa)

10.09

Isoelectric Point (pI)

46.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 104 - 129 5.7e-10 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015164)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22160 AT4G15120
fragaria_vesca FvH4_6g39500
prunus_persica Prupe.3G185800_v2.0.a1
pyrus_communis pycom09g06070 pycom17g12150
rosa_chinensis RchiOBHm_Chr2g0153531
rosa_laevigata RLG00000020707
rosa_multiflora Rmu_sc0003976.1_g000009
rosa_roxburghii Rroxscaffold_2G00094950
rosa_rugosa Rorug02G0439000
rosa_samantha Rh2AG503000 Rh2BG513700 Rh2CG488800 Rh2DG525400
rosa_wichuraiana Rw2G041290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 149
AccB1I GGYRCC 2 cut(s) 122, 478
AccB7I CCANNNNNTGG 1 cut(s) 36
AccII CGCG 1 cut(s) 351
AciI CCGC 2 cut(s) 105, 375
AcoI YGGCCR 1 cut(s) 106
AcsI RAATTY 1 cut(s) 706
AcuI CTGAAG 2 cut(s) 453, 491
AcyI GRCGYC 1 cut(s) 389
AfaI GTAC 2 cut(s) 385, 491
AfiI CCNNNNNNNGG 3 cut(s) 36, 385, 447
AjnI CCWGG 2 cut(s) 293, 484
AjuI GAANNNNNNNTTGG 2 cut(s) 410, 442
AluBI AGCT 6 cut(s) 149, 203, 228, 249, 505, 594
AluI AGCT 6 cut(s) 149, 203, 228, 249, 505, 594
Alw21I GWGCWC 1 cut(s) 596
Alw26I GTCTC 1 cut(s) 157
AlwNI CAGNNNCTG 2 cut(s) 36, 206
AoxI GGCC 5 cut(s) 3, 106, 262, 376, 695
ApeKI GCWGC 6 cut(s) 209, 212, 322, 361, 511, 670
ApoI RAATTY 1 cut(s) 706
AseI ATTAAT 1 cut(s) 587
AspLEI GCGC 1 cut(s) 353
AspS9I GGNCC 4 cut(s) 4, 291, 377, 438
AsuC2I CCSGG 3 cut(s) 257, 266, 408
AsuHPI GGTGA 1 cut(s) 169
AsuII TTCGAA 2 cut(s) 283, 704
AvaII GGWCC 2 cut(s) 291, 438
BanI GGYRCC 2 cut(s) 122, 478
BanII GRGCYC 2 cut(s) 257, 596
BbsI GAAGAC 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 596
BbvI GCAGC 6 cut(s) 196, 199, 309, 373, 523, 682
BccI CCATC 2 cut(s) 469, 504
BceAI ACGGC 3 cut(s) 118, 158, 402
BcgI CGANNNNNNTGC 2 cut(s) 152, 186
BciT130I CCWGG 2 cut(s) 295, 486
BcnI CCSGG 3 cut(s) 257, 266, 408
BcoDI GTCTC 1 cut(s) 157
BfaI CTAG 1 cut(s) 675
BfmI CTRYAG 1 cut(s) 500
BglI GCCNNNNNGGC 1 cut(s) 261
BisI GCNGC 8 cut(s) 106, 210, 213, 323, 362, 376, 512, 671
BlsI GCNGC 8 cut(s) 107, 211, 214, 324, 363, 377, 513, 672
Bme1390I CCNGG 5 cut(s) 257, 266, 295, 408, 486
Bme18I GGWCC 2 cut(s) 291, 438
BmgT120I GGNCC 4 cut(s) 4, 291, 377, 438
BmiI GGNNCC 5 cut(s) 16, 41, 124, 439, 480
BmrFI CCNGG 5 cut(s) 257, 266, 295, 408, 486
BpiI GAAGAC 1 cut(s) 87
BpmI CTGGAG 1 cut(s) 214
Bpu14I TTCGAA 2 cut(s) 283, 704
BpuEI CTTGAG 1 cut(s) 271
BpuMI CCSGG 3 cut(s) 257, 266, 408
BsaHI GRCGYC 1 cut(s) 389
BsaJI CCNNGG 3 cut(s) 100, 294, 485
BsaWI WCCGGW 2 cut(s) 74, 119
BsaXI ACNNNNNCTCC 5 cut(s) 56, 86, 101, 131, 718
Bsc4I CCNNNNNNNGG 3 cut(s) 36, 385, 447
Bse118I RCCGGY 2 cut(s) 125, 277
Bse1I ACTGG 4 cut(s) 41, 231, 376, 558
BseBI CCWGG 2 cut(s) 295, 486
BseDI CCNNGG 3 cut(s) 100, 294, 485
BseLI CCNNNNNNNGG 3 cut(s) 36, 385, 447
BseNI ACTGG 4 cut(s) 41, 231, 376, 558
BseXI GCAGC 6 cut(s) 196, 199, 309, 373, 523, 682
BseYI CCCAGC 3 cut(s) 29, 224, 402
BsgI GTGCAG 2 cut(s) 198, 380
Bsh1236I CGCG 1 cut(s) 351
BshFI GGCC 5 cut(s) 5, 108, 264, 378, 697
BshNI GGYRCC 2 cut(s) 122, 478
BsiHKAI GWGCWC 1 cut(s) 596
BsiSI CCGG 7 cut(s) 75, 120, 126, 257, 265, 278, 408
BslFI GGGAC 2 cut(s) 451, 640
BslI CCNNNNNNNGG 3 cut(s) 36, 385, 447
BsmAI GTCTC 1 cut(s) 157
BsmFI GGGAC 2 cut(s) 451, 640
BsnI GGCC 5 cut(s) 5, 108, 264, 378, 697
Bsp119I TTCGAA 2 cut(s) 283, 704
Bsp1286I GDGCHC 2 cut(s) 257, 596
BspACI CCGC 2 cut(s) 105, 375
BspANI GGCC 5 cut(s) 5, 108, 264, 378, 697
BspFNI CGCG 1 cut(s) 351
BspLI GGNNCC 5 cut(s) 16, 41, 124, 439, 480
BspT104I TTCGAA 2 cut(s) 283, 704
BspT107I GGYRCC 2 cut(s) 122, 478
BsrFI RCCGGY 2 cut(s) 125, 277
BsrI ACTGG 4 cut(s) 41, 231, 376, 558
BssAI RCCGGY 2 cut(s) 125, 277
BssECI CCNNGG 3 cut(s) 100, 294, 485
BssNI GRCGYC 1 cut(s) 389
Bst2UI CCWGG 2 cut(s) 295, 486
Bst4CI ACNGT 3 cut(s) 196, 291, 734
BstACI GRCGYC 1 cut(s) 389
BstBI TTCGAA 2 cut(s) 283, 704
BstC8I GCNNGC 1 cut(s) 127
BstDEI CTNAG 1 cut(s) 8
BstDSI CCRYGG 1 cut(s) 100
BstFNI CGCG 1 cut(s) 351
BstHHI GCGC 1 cut(s) 353
BstMAI GTCTC 1 cut(s) 157
BstMWI GCNNNNNNNGC 5 cut(s) 209, 261, 511, 517, 670
BstNI CCWGG 2 cut(s) 295, 486
BstSCI CCNGG 5 cut(s) 255, 264, 293, 406, 484
BstSFI CTRYAG 1 cut(s) 500
BstUI CGCG 1 cut(s) 351
BstV1I GCAGC 6 cut(s) 196, 199, 309, 373, 523, 682
BstV2I GAAGAC 1 cut(s) 87
BstXI CCANNNNNNTGG 1 cut(s) 622
BsuRI GGCC 5 cut(s) 5, 108, 264, 378, 697
BtgI CCRYGG 1 cut(s) 100
BtsI GCAGTG 2 cut(s) 168, 336
BtsIMutI CAGTG 6 cut(s) 168, 336, 369, 477, 539, 565
Cac8I GCNNGC 1 cut(s) 127
CaiI CAGNNNCTG 2 cut(s) 36, 206
CfoI GCGC 1 cut(s) 353
Cfr10I RCCGGY 2 cut(s) 125, 277
Cfr13I GGNCC 4 cut(s) 4, 291, 377, 438
CseI GACGC 1 cut(s) 378
Csp6I GTAC 2 cut(s) 384, 490
CviAII CATG 3 cut(s) 19, 569, 622
CviQI GTAC 2 cut(s) 384, 490
DdeI CTNAG 1 cut(s) 8
DrdI GACNNNNNNGTC 1 cut(s) 149
DseDI GACNNNNNNGTC 1 cut(s) 149
EaeI YGGCCR 1 cut(s) 106
Ecl136II GAGCTC 1 cut(s) 594
Eco147I AGGCCT 1 cut(s) 697
Eco24I GRGCYC 2 cut(s) 257, 596
Eco47I GGWCC 2 cut(s) 291, 438
Eco53kI GAGCTC 1 cut(s) 594
Eco57I CTGAAG 2 cut(s) 453, 491
EcoICRI GAGCTC 1 cut(s) 594
EcoRI GAATTC 1 cut(s) 706
EcoRII CCWGG 2 cut(s) 293, 484
EcoT38I GRGCYC 2 cut(s) 257, 596
FaeI CATG 3 cut(s) 22, 572, 625
FaiI YATR 6 cut(s) 20, 159, 356, 529, 570, 623
FaqI GGGAC 2 cut(s) 451, 640
FatI CATG 3 cut(s) 18, 568, 621
Fnu4HI GCNGC 8 cut(s) 106, 210, 213, 323, 362, 376, 512, 671
FriOI GRGCYC 2 cut(s) 257, 596
Fsp4HI GCNGC 8 cut(s) 106, 210, 213, 323, 362, 376, 512, 671
FspBI CTAG 1 cut(s) 675
GlaI GCGC 1 cut(s) 352
GluI GCNGC 8 cut(s) 106, 210, 213, 323, 362, 376, 512, 671
GsaI CCCAGC 3 cut(s) 33, 228, 406
GsuI CTGGAG 1 cut(s) 214
HaeIII GGCC 5 cut(s) 5, 108, 264, 378, 697
HapII CCGG 7 cut(s) 75, 120, 126, 257, 265, 278, 408
HgaI GACGC 1 cut(s) 378
HhaI GCGC 1 cut(s) 353
Hin1I GRCGYC 1 cut(s) 389
Hin1II CATG 3 cut(s) 22, 572, 625
Hin6I GCGC 1 cut(s) 351
HinP1I GCGC 1 cut(s) 351
HinfI GANTC 1 cut(s) 220
HpaII CCGG 7 cut(s) 75, 120, 126, 257, 265, 278, 408
HphI GGTGA 1 cut(s) 169
Hpy166II GTNNAC 3 cut(s) 369, 396, 457
Hpy188I TCNGA 3 cut(s) 431, 582, 643
Hpy188III TCNNGA 3 cut(s) 58, 140, 303
Hpy8I GTNNAC 3 cut(s) 369, 396, 457
Hpy99I CGWCG 1 cut(s) 394
HpyAV CCTTC 1 cut(s) 254
HpyCH4III ACNGT 3 cut(s) 196, 291, 734
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 4 cut(s) 215, 361, 413, 664
HpyF10VI GCNNNNNNNGC 5 cut(s) 209, 261, 511, 517, 670
HpyF3I CTNAG 1 cut(s) 8
HpySE526I ACGT 1 cut(s) 54
Hsp92I GRCGYC 1 cut(s) 389
Hsp92II CATG 3 cut(s) 22, 572, 625
HspAI GCGC 1 cut(s) 351
KroI GCCGGC 1 cut(s) 125
KroNI GCCGGC 1 cut(s) 127
LmnI GCTCC 3 cut(s) 45, 233, 726
Lsp1109I GCAGC 6 cut(s) 196, 199, 309, 373, 523, 682
MaeI CTAG 1 cut(s) 675
MaeII ACGT 1 cut(s) 54
MaeIII GTNAC 3 cut(s) 175, 196, 233
MboII GAAGA 3 cut(s) 87, 318, 630
MhlI GDGCHC 2 cut(s) 257, 596
MluCI AATT 3 cut(s) 418, 700, 706
MmeI TCCRAC 2 cut(s) 48, 664
MnlI CCTC 4 cut(s) 80, 95, 127, 721
MroNI GCCGGC 1 cut(s) 125
MseI TTAA 1 cut(s) 587
MslI CAYNNNNRTG 1 cut(s) 620
MspI CCGG 7 cut(s) 75, 120, 126, 257, 265, 278, 408
MspR9I CCNGG 5 cut(s) 257, 266, 295, 408, 486
MvaI CCWGG 2 cut(s) 295, 486
MvnI CGCG 1 cut(s) 351
MwoI GCNNNNNNNGC 5 cut(s) 209, 261, 511, 517, 670
NaeI GCCGGC 1 cut(s) 127
NciI CCSGG 3 cut(s) 257, 266, 408
NgoMIV GCCGGC 1 cut(s) 125
NlaIII CATG 3 cut(s) 22, 572, 625
NlaIV GGNNCC 5 cut(s) 16, 41, 124, 439, 480
NmuCI GTSAC 1 cut(s) 175
NspV TTCGAA 2 cut(s) 283, 704
PceI AGGCCT 1 cut(s) 697
PdiI GCCGGC 1 cut(s) 127
PfeI GAWTC 1 cut(s) 220
PflMI CCANNNNNTGG 1 cut(s) 36
PkrI GCNGC 8 cut(s) 107, 211, 214, 324, 363, 377, 513, 672
PshBI ATTAAT 1 cut(s) 587
Psp124BI GAGCTC 1 cut(s) 596
Psp6I CCWGG 2 cut(s) 293, 484
PspFI CCCAGC 3 cut(s) 29, 224, 402
PspGI CCWGG 2 cut(s) 293, 484
PspN4I GGNNCC 5 cut(s) 16, 41, 124, 439, 480
PspPI GGNCC 4 cut(s) 4, 291, 377, 438
PstNI CAGNNNCTG 2 cut(s) 36, 206
RsaI GTAC 2 cut(s) 385, 491
RsaNI GTAC 2 cut(s) 384, 490
RseI CAYNNNNRTG 1 cut(s) 620
SacI GAGCTC 1 cut(s) 596
SaqAI TTAA 1 cut(s) 587
SatI GCNGC 8 cut(s) 106, 210, 213, 323, 362, 376, 512, 671
Sau96I GGNCC 4 cut(s) 4, 291, 377, 438
ScrFI CCNGG 5 cut(s) 257, 266, 295, 408, 486
SduI GDGCHC 2 cut(s) 257, 596
SetI ASST 8 cut(s) 57, 151, 205, 230, 251, 487, 507, 596
SfcI CTRYAG 1 cut(s) 500
SfuI TTCGAA 2 cut(s) 283, 704
SinI GGWCC 2 cut(s) 291, 438
SmiMI CAYNNNNRTG 1 cut(s) 620
SmlI CTYRAG 1 cut(s) 250
SmoI CTYRAG 1 cut(s) 250
Sse9I AATT 3 cut(s) 418, 700, 706
SseBI AGGCCT 1 cut(s) 697
SsiI CCGC 2 cut(s) 105, 375
SspMI CTAG 1 cut(s) 675
SstI GAGCTC 1 cut(s) 596
StuI AGGCCT 1 cut(s) 697
StyD4I CCNGG 5 cut(s) 255, 264, 293, 406, 484
TaaI ACNGT 3 cut(s) 196, 291, 734
TaiI ACGT 1 cut(s) 57
TaqI TCGA 2 cut(s) 283, 704
TaqII GACCGA 1 cut(s) 125
TasI AATT 3 cut(s) 418, 700, 706
TauI GCSGC 2 cut(s) 108, 378
TfiI GAWTC 1 cut(s) 220
Tru1I TTAA 1 cut(s) 587
Tru9I TTAA 1 cut(s) 587
TscAI CASTG 6 cut(s) 175, 343, 376, 477, 546, 565
TseFI GTSAC 1 cut(s) 175
TseI GCWGC 6 cut(s) 209, 212, 322, 361, 511, 670
Tsp45I GTSAC 1 cut(s) 175
TspDTI ATGAA 1 cut(s) 621
TspRI CASTG 6 cut(s) 175, 343, 376, 477, 546, 565
Van91I CCANNNNNTGG 1 cut(s) 36
VpaK11BI GGWCC 2 cut(s) 291, 438
VspI ATTAAT 1 cut(s) 587
XapI RAATTY 1 cut(s) 706
XspI CTAG 1 cut(s) 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.