Prupe.3G185800_v2.0.a1

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0015164
Physical Location & Seq
Reverse (-)
20034265 .. 20035525
1261 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G185800.1

Sequence Viewer

Length: 759 bp
ATGGCCATGAGTGGTACTGGAACCATGTCCAATAACCCTAATGAATGGCTCCAATTCTACAACCAAACCCTGTCTTCTTCTCAAGCTCAGGTGTCTCATGGCCACATTTCTTCAGGTATTAATACTTCAACTTTTTTTGGTCATGACCAAGTCTCTGAAGCTACTGTGGTCACTACAACTCCATCCGCTGTCGCCGCAACAAGTGCTGTTGGCTCGGCCAATCCGGGCTCCAGCACCAACAGTTTGAGCCCTGATCAAGGACGGGTTTCAAAACCCGCCAGAAAGAGATCTAGAGCCTCGAGACGGACCCCCACCACGCTGCTCAACACGGACACTACGAATTTCCGTGCCATGGTGCAGCAGTTCACCGGGGGCCCTAACACGGCGTCGTTTCCCTCCGGTGGGTCCAGTTTTAGTTTCGGGCTGGCCCCGCCTAGGCCACAGGGCTTTATGGTGTCTCCGGGGTATCATCCTCTACAGCCTCAGCAGCACCAGCAACATCATCATCATCAGTACCAGCAACAACAACAACGTCAGAACCAGCAATACTTGGTTGGTGCAGGAGTTGGGGATGGGTTTCTCCAGCGATTGAGCTCATCATCATCAAGAGGAGGACTCACAACAAACATGGGATTTGGGGGTCCGTCTGATCATCATGAGTTTTTGAGGGAGGGTATGTCGTCGTCCCAAGTGCCGTCTGCAGCTAGGCCCGGCGCTAACGCTGCCAATGAGAACAGGAGTGGCAGTTTCATGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

253

Amino Acids

26.8

Weight (kDa)

10.5

Isoelectric Point (pI)

54.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015164)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22160 AT4G15120
fragaria_vesca FvH4_6g39500
prunus_persica Prupe.3G185800_v2.0.a1
pyrus_communis pycom09g06070 pycom17g12150
rosa_chinensis RchiOBHm_Chr2g0153531
rosa_laevigata RLG00000020707
rosa_multiflora Rmu_sc0003976.1_g000009
rosa_roxburghii Rroxscaffold_2G00094950
rosa_rugosa Rorug02G0439000
rosa_samantha Rh2AG503000 Rh2BG513700 Rh2CG488800 Rh2DG525400
rosa_wichuraiana Rw2G041290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 186, 195, 276, 431
AcoI YGGCCR 3 cut(s) 3, 100, 216
AcsI RAATTY 1 cut(s) 340
AcuI CTGAAG 2 cut(s) 96, 177
AcyI GRCGYC 1 cut(s) 386
AfaI GTAC 2 cut(s) 16, 515
AfiI CCNNNNNNNGG 7 cut(s) 257, 303, 352, 382, 401, 402, 435
AgsI TTSAA 2 cut(s) 129, 270
AluBI AGCT 4 cut(s) 86, 161, 594, 704
AluI AGCT 4 cut(s) 86, 161, 594, 704
Alw21I GWGCWC 1 cut(s) 596
Alw26I GTCTC 4 cut(s) 99, 157, 295, 462
Ama87I CYCGRG 1 cut(s) 298
AoxI GGCC 7 cut(s) 3, 100, 216, 373, 426, 437, 707
ApaI GGGCCC 1 cut(s) 377
ApeKI GCWGC 5 cut(s) 319, 358, 487, 701, 722
ApoI RAATTY 1 cut(s) 340
AseI ATTAAT 1 cut(s) 120
AspA2I CCTAGG 1 cut(s) 434
AspLEI GCGC 1 cut(s) 716
AspS9I GGNCC 7 cut(s) 306, 373, 374, 405, 427, 641, 708
AsuC2I CCSGG 4 cut(s) 225, 370, 462, 711
AsuHPI GGTGA 1 cut(s) 358
AvaI CYCGRG 1 cut(s) 298
AvaII GGWCC 3 cut(s) 306, 405, 641
AvrII CCTAGG 1 cut(s) 434
BaeGI GKGCMC 1 cut(s) 377
BalI TGGCCA 2 cut(s) 5, 102
BanII GRGCYC 4 cut(s) 230, 251, 377, 596
BarI GAAGNNNNNNTAC 2 cut(s) 109, 141
BbsI GAAGAC 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 596
BbvCI CCTCAGC 1 cut(s) 483
BbvI GCAGC 5 cut(s) 306, 370, 499, 709, 713
BccI CCATC 2 cut(s) 190, 566
BceAI ACGGC 2 cut(s) 399, 679
BclI TGATCA 2 cut(s) 253, 649
BcnI CCSGG 4 cut(s) 225, 370, 462, 711
BcoDI GTCTC 4 cut(s) 99, 157, 295, 462
BfaI CTAG 3 cut(s) 291, 435, 705
BfmI CTRYAG 2 cut(s) 476, 699
BfoI RGCGCY 1 cut(s) 717
BglII AGATCT 1 cut(s) 287
BisI GCNGC 6 cut(s) 195, 320, 359, 488, 702, 723
BlnI CCTAGG 1 cut(s) 434
BlsI GCNGC 6 cut(s) 196, 321, 360, 489, 703, 724
Bme1390I CCNGG 4 cut(s) 225, 370, 462, 711
Bme18I GGWCC 3 cut(s) 306, 405, 641
BmeT110I CYCGRG 1 cut(s) 298
BmgT120I GGNCC 7 cut(s) 306, 373, 374, 405, 427, 641, 708
BmiI GGNNCC 9 cut(s) 22, 50, 229, 308, 374, 375, 406, 429, 642
BmrFI CCNGG 4 cut(s) 225, 370, 462, 711
BpiI GAAGAC 1 cut(s) 66
BplI GAGNNNNNCTC 2 cut(s) 600, 632
BpmI CTGGAG 2 cut(s) 214, 566
Bpu10I CCTNAGC 2 cut(s) 87, 483
BpuEI CTTGAG 1 cut(s) 66
BpuMI CCSGG 4 cut(s) 225, 370, 462, 711
BsaHI GRCGYC 1 cut(s) 386
BsaJI CCNNGG 4 cut(s) 351, 369, 434, 461
BsaWI WCCGGW 1 cut(s) 398
BsaXI ACNNNNNCTCC 5 cut(s) 163, 193, 662, 692, 730
Bsc4I CCNNNNNNNGG 7 cut(s) 257, 303, 352, 382, 401, 402, 435
Bse1I ACTGG 2 cut(s) 22, 408
BseDI CCNNGG 4 cut(s) 351, 369, 434, 461
BseGI GGATG 3 cut(s) 182, 469, 577
BseLI CCNNNNNNNGG 7 cut(s) 257, 303, 352, 382, 401, 402, 435
BseMII CTCAG 2 cut(s) 101, 497
BseNI ACTGG 2 cut(s) 22, 408
BseRI GAGGAG 1 cut(s) 624
BseSI GKGCMC 1 cut(s) 377
BseXI GCAGC 5 cut(s) 306, 370, 499, 709, 713
BsgI GTGCAG 2 cut(s) 377, 579
BshFI GGCC 7 cut(s) 5, 102, 218, 375, 428, 439, 709
BsiHKAI GWGCWC 1 cut(s) 596
BsiHKCI CYCGRG 1 cut(s) 298
BsiSI CCGG 5 cut(s) 224, 369, 399, 461, 711
BslFI GGGAC 1 cut(s) 670
BslI CCNNNNNNNGG 7 cut(s) 257, 303, 352, 382, 401, 402, 435
BsmAI GTCTC 4 cut(s) 99, 157, 295, 462
BsmBI CGTCTC 1 cut(s) 295
BsmFI GGGAC 1 cut(s) 670
BsnI GGCC 7 cut(s) 5, 102, 218, 375, 428, 439, 709
BsoBI CYCGRG 1 cut(s) 298
Bsp120I GGGCCC 1 cut(s) 373
Bsp1286I GDGCHC 4 cut(s) 230, 251, 377, 596
Bsp143I GATC 3 cut(s) 253, 287, 649
Bsp19I CCATGG 1 cut(s) 351
BspACI CCGC 4 cut(s) 186, 195, 276, 431
BspANI GGCC 7 cut(s) 5, 102, 218, 375, 428, 439, 709
BspCNI CTCAG 2 cut(s) 100, 496
BspHI TCATGA 2 cut(s) 142, 655
BspLI GGNNCC 9 cut(s) 22, 50, 229, 308, 374, 375, 406, 429, 642
BspMAI CTGCAG 1 cut(s) 703
BsrI ACTGG 2 cut(s) 22, 408
BssECI CCNNGG 4 cut(s) 351, 369, 434, 461
BssMI GATC 3 cut(s) 253, 287, 649
BssNI GRCGYC 1 cut(s) 386
BssT1I CCWWGG 2 cut(s) 351, 434
Bst4CI ACNGT 2 cut(s) 166, 242
BstACI GRCGYC 1 cut(s) 386
BstAPI GCANNNNNTGC 1 cut(s) 203
BstC8I GCNNGC 1 cut(s) 426
BstDEI CTNAG 2 cut(s) 87, 483
BstDSI CCRYGG 1 cut(s) 351
BstENI CCTNNNNNAGG 1 cut(s) 255
BstF5I GGATG 3 cut(s) 182, 469, 577
BstH2I RGCGCY 1 cut(s) 717
BstHHI GCGC 1 cut(s) 716
BstKTI GATC 3 cut(s) 256, 290, 652
BstMAI GTCTC 4 cut(s) 99, 157, 295, 462
BstMBI GATC 3 cut(s) 253, 287, 649
BstMWI GCNNNNNNNGC 6 cut(s) 194, 203, 430, 487, 493, 722
BstSCI CCNGG 4 cut(s) 223, 368, 460, 709
BstSFI CTRYAG 2 cut(s) 476, 699
BstSLI GKGCMC 1 cut(s) 377
BstV1I GCAGC 5 cut(s) 306, 370, 499, 709, 713
BstV2I GAAGAC 1 cut(s) 66
BstX2I RGATCY 1 cut(s) 287
BstYI RGATCY 1 cut(s) 287
BsuRI GGCC 7 cut(s) 5, 102, 218, 375, 428, 439, 709
BtgI CCRYGG 1 cut(s) 351
BtsCI GGATG 3 cut(s) 182, 469, 577
Cac8I GCNNGC 1 cut(s) 426
CciI TCATGA 2 cut(s) 142, 655
CfoI GCGC 1 cut(s) 716
Cfr13I GGNCC 7 cut(s) 306, 373, 374, 405, 427, 641, 708
CseI GACGC 1 cut(s) 375
Csp6I GTAC 2 cut(s) 15, 514
CviAII CATG 8 cut(s) 7, 25, 98, 143, 352, 628, 656, 751
CviQI GTAC 2 cut(s) 15, 514
DdeI CTNAG 2 cut(s) 87, 483
DpnI GATC 3 cut(s) 255, 289, 651
DpnII GATC 3 cut(s) 253, 287, 649
EaeI YGGCCR 3 cut(s) 3, 100, 216
Ecl136II GAGCTC 1 cut(s) 594
Eco130I CCWWGG 2 cut(s) 351, 434
Eco24I GRGCYC 4 cut(s) 230, 251, 377, 596
Eco47I GGWCC 3 cut(s) 306, 405, 641
Eco53kI GAGCTC 1 cut(s) 594
Eco57I CTGAAG 2 cut(s) 96, 177
Eco88I CYCGRG 1 cut(s) 298
EcoICRI GAGCTC 1 cut(s) 594
EcoNI CCTNNNNNAGG 1 cut(s) 255
EcoO109I RGGNCCY 2 cut(s) 373, 374
EcoT14I CCWWGG 2 cut(s) 351, 434
EcoT38I GRGCYC 4 cut(s) 230, 251, 377, 596
ErhI CCWWGG 2 cut(s) 351, 434
Esp3I CGTCTC 1 cut(s) 295
FaeI CATG 8 cut(s) 10, 28, 101, 146, 355, 631, 659, 754
FaqI GGGAC 1 cut(s) 670
FatI CATG 8 cut(s) 6, 24, 97, 142, 351, 627, 655, 750
FauI CCCGC 2 cut(s) 283, 438
FbaI TGATCA 2 cut(s) 253, 649
Fnu4HI GCNGC 6 cut(s) 195, 320, 359, 488, 702, 723
FokI GGATG 3 cut(s) 169, 456, 584
FriOI GRGCYC 4 cut(s) 230, 251, 377, 596
Fsp4HI GCNGC 6 cut(s) 195, 320, 359, 488, 702, 723
FspBI CTAG 3 cut(s) 291, 435, 705
GlaI GCGC 1 cut(s) 715
GluI GCNGC 6 cut(s) 195, 320, 359, 488, 702, 723
GsuI CTGGAG 2 cut(s) 214, 566
HaeII RGCGCY 1 cut(s) 717
HaeIII GGCC 7 cut(s) 5, 102, 218, 375, 428, 439, 709
HapII CCGG 5 cut(s) 224, 369, 399, 461, 711
HgaI GACGC 1 cut(s) 375
HhaI GCGC 1 cut(s) 716
Hin1I GRCGYC 1 cut(s) 386
Hin1II CATG 8 cut(s) 10, 28, 101, 146, 355, 631, 659, 754
Hin6I GCGC 1 cut(s) 714
HinP1I GCGC 1 cut(s) 714
HinfI GANTC 1 cut(s) 615
HpaII CCGG 5 cut(s) 224, 369, 399, 461, 711
HphI GGTGA 1 cut(s) 358
Hpy166II GTNNAC 1 cut(s) 366
Hpy188I TCNGA 3 cut(s) 157, 537, 649
Hpy188III TCNNGA 5 cut(s) 143, 291, 300, 606, 656
Hpy8I GTNNAC 1 cut(s) 366
Hpy99I CGWCG 2 cut(s) 391, 685
HpyCH4III ACNGT 2 cut(s) 166, 242
HpyCH4IV ACGT 1 cut(s) 532
HpyCH4V TGCA 3 cut(s) 358, 560, 701
HpyF10VI GCNNNNNNNGC 6 cut(s) 194, 203, 430, 487, 493, 722
HpyF3I CTNAG 2 cut(s) 87, 483
HpySE526I ACGT 1 cut(s) 532
Hsp92I GRCGYC 1 cut(s) 386
Hsp92II CATG 8 cut(s) 10, 28, 101, 146, 355, 631, 659, 754
HspAI GCGC 1 cut(s) 714
Ksp22I TGATCA 2 cut(s) 253, 649
Kzo9I GATC 3 cut(s) 253, 287, 649
LmnI GCTCC 2 cut(s) 54, 233
Lsp1109I GCAGC 5 cut(s) 306, 370, 499, 709, 713
MaeI CTAG 3 cut(s) 291, 435, 705
MaeII ACGT 1 cut(s) 532
MaeIII GTNAC 1 cut(s) 169
MalI GATC 3 cut(s) 255, 289, 651
MboI GATC 3 cut(s) 253, 287, 649
MboII GAAGA 3 cut(s) 66, 69, 102
MflI RGATCY 1 cut(s) 287
MhlI GDGCHC 4 cut(s) 230, 251, 377, 596
MlsI TGGCCA 2 cut(s) 5, 102
MluCI AATT 2 cut(s) 53, 340
MluNI TGGCCA 2 cut(s) 5, 102
MlyI GAGTC 1 cut(s) 609
MnlI CCTC 8 cut(s) 307, 406, 483, 492, 602, 605, 660, 664
Mox20I TGGCCA 2 cut(s) 5, 102
MscI TGGCCA 2 cut(s) 5, 102
MseI TTAA 1 cut(s) 120
Msp20I TGGCCA 2 cut(s) 5, 102
MspA1I CMGCKG 1 cut(s) 188
MspI CCGG 5 cut(s) 224, 369, 399, 461, 711
MspR9I CCNGG 4 cut(s) 225, 370, 462, 711
MwoI GCNNNNNNNGC 6 cut(s) 194, 203, 430, 487, 493, 722
NciI CCSGG 4 cut(s) 225, 370, 462, 711
NcoI CCATGG 1 cut(s) 351
NdeII GATC 3 cut(s) 253, 287, 649
NlaIII CATG 8 cut(s) 10, 28, 101, 146, 355, 631, 659, 754
NlaIV GGNNCC 9 cut(s) 22, 50, 229, 308, 374, 375, 406, 429, 642
NmeAIII GCCGAG 1 cut(s) 194
NmuCI GTSAC 1 cut(s) 169
PaeR7I CTCGAG 1 cut(s) 298
PagI TCATGA 2 cut(s) 142, 655
PcsI WCGNNNNNNNCGW 1 cut(s) 335
PflFI GACNNNGTC 1 cut(s) 149
PkrI GCNGC 6 cut(s) 196, 321, 360, 489, 703, 724
PleI GAGTC 1 cut(s) 609
PpsI GAGTC 1 cut(s) 609
PshBI ATTAAT 1 cut(s) 120
Psp124BI GAGCTC 1 cut(s) 596
PspN4I GGNNCC 9 cut(s) 22, 50, 229, 308, 374, 375, 406, 429, 642
PspOMI GGGCCC 1 cut(s) 373
PspPI GGNCC 7 cut(s) 306, 373, 374, 405, 427, 641, 708
PsrI GAACNNNNNNTAC 2 cut(s) 530, 562
PstI CTGCAG 1 cut(s) 703
PsuI RGATCY 1 cut(s) 287
PsyI GACNNNGTC 1 cut(s) 149
RsaI GTAC 2 cut(s) 16, 515
RsaNI GTAC 2 cut(s) 15, 514
SacI GAGCTC 1 cut(s) 596
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 6 cut(s) 195, 320, 359, 488, 702, 723
Sau3AI GATC 3 cut(s) 253, 287, 649
Sau96I GGNCC 7 cut(s) 306, 373, 374, 405, 427, 641, 708
SchI GAGTC 1 cut(s) 609
ScrFI CCNGG 4 cut(s) 225, 370, 462, 711
SduI GDGCHC 4 cut(s) 230, 251, 377, 596
SetI ASST 7 cut(s) 88, 93, 118, 163, 535, 596, 706
SfcI CTRYAG 2 cut(s) 476, 699
Sfr274I CTCGAG 1 cut(s) 298
SinI GGWCC 3 cut(s) 306, 405, 641
SlaI CTCGAG 1 cut(s) 298
SmlI CTYRAG 2 cut(s) 81, 298
SmoI CTYRAG 2 cut(s) 81, 298
Sse9I AATT 2 cut(s) 53, 340
SsiI CCGC 4 cut(s) 186, 195, 276, 431
SspMI CTAG 3 cut(s) 291, 435, 705
SstI GAGCTC 1 cut(s) 596
StyD4I CCNGG 4 cut(s) 223, 368, 460, 709
StyI CCWWGG 2 cut(s) 351, 434
TaaI ACNGT 2 cut(s) 166, 242
TaiI ACGT 1 cut(s) 535
TaqI TCGA 1 cut(s) 299
TasI AATT 2 cut(s) 53, 340
TauI GCSGC 1 cut(s) 197
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TseFI GTSAC 1 cut(s) 169
TseI GCWGC 5 cut(s) 319, 358, 487, 701, 722
Tsp45I GTSAC 1 cut(s) 169
TspDTI ATGAA 2 cut(s) 57, 739
TspGWI ACGGA 4 cut(s) 319, 335, 344, 633
Tth111I GACNNNGTC 1 cut(s) 149
VpaK11BI GGWCC 3 cut(s) 306, 405, 641
VspI ATTAAT 1 cut(s) 120
XagI CCTNNNNNAGG 1 cut(s) 255
XapI RAATTY 1 cut(s) 340
XbaI TCTAGA 1 cut(s) 290
XhoI CTCGAG 1 cut(s) 298
XmaJI CCTAGG 1 cut(s) 434
XspI CTAG 3 cut(s) 291, 435, 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.