RLG00000020707

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0015164
Physical Location & Seq
Reverse (-)
67838543 .. 67839271
729 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020707

Sequence Viewer

Length: 729 bp
ATGTCCAACCCCAGCGACTGGCTCCAATACTACAACGTCCAGAACAACACCCTCTCCGGTCAAGCCCTCCCTTTGTCTTCCCACGGCGGCCACTTGTCCTCCGGTGCCGGCTTGTTCGGTCAAGACCAAGCTGTCTCTCATCACGAAGCCACTGTCGTCACCACCACCACCACCACCGCTACAGCTTCTGCTGCTGCACCGAATCCCAGCTCCGGTAACAACACCAACAGCTTGAGCCCGGAAGGCCGGGTTTCCAAGCCGGTCCGAAAACGGTCCAGGGCTTCCAGAAGAACCCCCACCACGCTGCTCAACACCGACACTGCGAACTTTCGCGCTATGGTGCAGCAGTTCACTGGCGGCCCAAGTACGGCGTCGTTTACCACCCAGCCTGGTGCAACCAATTTCGGTTTCGGACTTGGGCACAGACAAGGGTTTGTGAACCCTAATGCTTCAGTGATGGTGCCACCTGGGTACAACCATCTACAGCTTCAGCAGCAACAGCAAAACCCGTATCTGCTTTCACTGAACAACAATAATACCAGTGATAATCATGGGTTTGTTCAGAGATTAATGAGCTCGTCATCATCGGCAAGACCCACAAACATGGGGGTTTCATTTTCTTCTGATGAGTTTTCGTCCCAAGTGCAAGGGCAGCCTAGTCTGGTTGGAAGTGGTAGGCCTAATTCGAATTCCTCCAATGAGAACAGGAGCAACAGTTTCTTGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

243

Amino Acids

25.73

Weight (kDa)

10.09

Isoelectric Point (pI)

45.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 98 - 123 5.5e-10 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015164)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22160 AT4G15120
fragaria_vesca FvH4_6g39500
prunus_persica Prupe.3G185800_v2.0.a1
pyrus_communis pycom09g06070 pycom17g12150
rosa_chinensis RchiOBHm_Chr2g0153531
rosa_laevigata RLG00000020707
rosa_multiflora Rmu_sc0003976.1_g000009
rosa_roxburghii Rroxscaffold_2G00094950
rosa_rugosa Rorug02G0439000
rosa_samantha Rh2AG503000 Rh2BG513700 Rh2CG488800 Rh2DG525400
rosa_wichuraiana Rw2G041290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 131
AccB1I GGYRCC 2 cut(s) 104, 460
AccB7I CCANNNNNTGG 1 cut(s) 18
AccII CGCG 1 cut(s) 333
AciI CCGC 3 cut(s) 87, 177, 357
AcoI YGGCCR 1 cut(s) 88
AcsI RAATTY 1 cut(s) 688
AcuI CTGAAG 2 cut(s) 435, 473
AcyI GRCGYC 1 cut(s) 371
AfaI GTAC 2 cut(s) 367, 473
AfiI CCNNNNNNNGG 3 cut(s) 18, 212, 367
AjnI CCWGG 3 cut(s) 275, 388, 466
AjuI GAANNNNNNNTTGG 2 cut(s) 392, 424
AluBI AGCT 6 cut(s) 131, 185, 210, 231, 487, 576
AluI AGCT 6 cut(s) 131, 185, 210, 231, 487, 576
Alw21I GWGCWC 1 cut(s) 578
Alw26I GTCTC 1 cut(s) 139
AlwNI CAGNNNCTG 2 cut(s) 18, 188
AoxI GGCC 4 cut(s) 88, 244, 358, 677
ApeKI GCWGC 6 cut(s) 191, 194, 304, 343, 493, 652
ApoI RAATTY 1 cut(s) 688
ArsI GACNNNNNNTTYG 2 cut(s) 138, 170
AseI ATTAAT 1 cut(s) 569
AspLEI GCGC 1 cut(s) 335
AspS9I GGNCC 3 cut(s) 262, 273, 359
AsuC2I CCSGG 2 cut(s) 239, 248
AsuHPI GGTGA 1 cut(s) 151
AsuII TTCGAA 1 cut(s) 686
AvaII GGWCC 2 cut(s) 262, 273
BaeGI GKGCMC 1 cut(s) 423
BanI GGYRCC 2 cut(s) 104, 460
BanII GRGCYC 2 cut(s) 239, 578
BbsI GAAGAC 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 578
BbvI GCAGC 6 cut(s) 178, 181, 291, 355, 505, 664
BccI CCATC 2 cut(s) 451, 486
BceAI ACGGC 2 cut(s) 100, 384
BciT130I CCWGG 3 cut(s) 277, 390, 468
BcnI CCSGG 2 cut(s) 239, 248
BcoDI GTCTC 1 cut(s) 139
BfaI CTAG 1 cut(s) 657
BfmI CTRYAG 2 cut(s) 180, 482
BglI GCCNNNNNGGC 1 cut(s) 243
BisI GCNGC 8 cut(s) 88, 192, 195, 305, 344, 358, 494, 653
BlsI GCNGC 8 cut(s) 89, 193, 196, 306, 345, 359, 495, 654
Bme1390I CCNGG 5 cut(s) 239, 248, 277, 390, 468
Bme18I GGWCC 2 cut(s) 262, 273
BmgT120I GGNCC 3 cut(s) 262, 273, 359
BmiI GGNNCC 3 cut(s) 23, 106, 462
BmrFI CCNGG 5 cut(s) 239, 248, 277, 390, 468
BpiI GAAGAC 1 cut(s) 69
Bpu14I TTCGAA 1 cut(s) 686
BpuEI CTTGAG 1 cut(s) 253
BpuMI CCSGG 2 cut(s) 239, 248
BsaHI GRCGYC 1 cut(s) 371
BsaJI CCNNGG 3 cut(s) 82, 276, 467
BsaWI WCCGGW 3 cut(s) 56, 101, 212
BsaXI ACNNNNNCTCC 5 cut(s) 38, 68, 83, 113, 700
Bsc4I CCNNNNNNNGG 3 cut(s) 18, 212, 367
Bse118I RCCGGY 2 cut(s) 107, 259
Bse1I ACTGG 3 cut(s) 23, 358, 540
BseBI CCWGG 3 cut(s) 277, 390, 468
BseDI CCNNGG 3 cut(s) 82, 276, 467
BseLI CCNNNNNNNGG 3 cut(s) 18, 212, 367
BseNI ACTGG 3 cut(s) 23, 358, 540
BseSI GKGCMC 1 cut(s) 423
BseXI GCAGC 6 cut(s) 178, 181, 291, 355, 505, 664
BseYI CCCAGC 3 cut(s) 11, 206, 384
BsgI GTGCAG 2 cut(s) 180, 362
Bsh1236I CGCG 1 cut(s) 333
BshFI GGCC 4 cut(s) 90, 246, 360, 679
BshNI GGYRCC 2 cut(s) 104, 460
BsiHKAI GWGCWC 1 cut(s) 578
BsiSI CCGG 7 cut(s) 57, 102, 108, 213, 239, 247, 260
BslFI GGGAC 1 cut(s) 622
BslI CCNNNNNNNGG 3 cut(s) 18, 212, 367
BsmAI GTCTC 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 622
BsnI GGCC 4 cut(s) 90, 246, 360, 679
Bsp119I TTCGAA 1 cut(s) 686
Bsp1286I GDGCHC 3 cut(s) 239, 423, 578
BspACI CCGC 3 cut(s) 87, 177, 357
BspANI GGCC 4 cut(s) 90, 246, 360, 679
BspFNI CGCG 1 cut(s) 333
BspLI GGNNCC 3 cut(s) 23, 106, 462
BspT104I TTCGAA 1 cut(s) 686
BspT107I GGYRCC 2 cut(s) 104, 460
BsrFI RCCGGY 2 cut(s) 107, 259
BsrI ACTGG 3 cut(s) 23, 358, 540
BssAI RCCGGY 2 cut(s) 107, 259
BssECI CCNNGG 3 cut(s) 82, 276, 467
BssNI GRCGYC 1 cut(s) 371
Bst2UI CCWGG 3 cut(s) 277, 390, 468
Bst4CI ACNGT 3 cut(s) 154, 273, 716
BstACI GRCGYC 1 cut(s) 371
BstBI TTCGAA 1 cut(s) 686
BstC8I GCNNGC 1 cut(s) 109
BstDSI CCRYGG 1 cut(s) 82
BstFNI CGCG 1 cut(s) 333
BstHHI GCGC 1 cut(s) 335
BstMAI GTCTC 1 cut(s) 139
BstMWI GCNNNNNNNGC 5 cut(s) 191, 243, 493, 499, 652
BstNI CCWGG 3 cut(s) 277, 390, 468
BstSCI CCNGG 5 cut(s) 237, 246, 275, 388, 466
BstSFI CTRYAG 2 cut(s) 180, 482
BstSLI GKGCMC 1 cut(s) 423
BstUI CGCG 1 cut(s) 333
BstV1I GCAGC 6 cut(s) 178, 181, 291, 355, 505, 664
BstV2I GAAGAC 1 cut(s) 69
BstXI CCANNNNNNTGG 1 cut(s) 604
BsuRI GGCC 4 cut(s) 90, 246, 360, 679
BtgI CCRYGG 1 cut(s) 82
BtsI GCAGTG 1 cut(s) 318
BtsIMutI CAGTG 6 cut(s) 150, 318, 351, 459, 521, 547
Cac8I GCNNGC 1 cut(s) 109
CaiI CAGNNNCTG 2 cut(s) 18, 188
CfoI GCGC 1 cut(s) 335
Cfr10I RCCGGY 2 cut(s) 107, 259
Cfr13I GGNCC 3 cut(s) 262, 273, 359
CpoI CGGWCCG 1 cut(s) 262
CseI GACGC 1 cut(s) 360
Csp6I GTAC 2 cut(s) 366, 472
CspI CGGWCCG 1 cut(s) 262
CviAII CATG 2 cut(s) 551, 604
CviQI GTAC 2 cut(s) 366, 472
DrdI GACNNNNNNGTC 1 cut(s) 131
DseDI GACNNNNNNGTC 1 cut(s) 131
EaeI YGGCCR 1 cut(s) 88
Ecl136II GAGCTC 1 cut(s) 576
Eco147I AGGCCT 1 cut(s) 679
Eco24I GRGCYC 2 cut(s) 239, 578
Eco47I GGWCC 2 cut(s) 262, 273
Eco53kI GAGCTC 1 cut(s) 576
Eco57I CTGAAG 2 cut(s) 435, 473
EcoICRI GAGCTC 1 cut(s) 576
EcoRI GAATTC 1 cut(s) 688
EcoRII CCWGG 3 cut(s) 275, 388, 466
EcoT38I GRGCYC 2 cut(s) 239, 578
FaeI CATG 2 cut(s) 554, 607
FaiI YATR 3 cut(s) 338, 552, 605
FaqI GGGAC 1 cut(s) 622
FatI CATG 2 cut(s) 550, 603
Fnu4HI GCNGC 8 cut(s) 88, 192, 195, 305, 344, 358, 494, 653
FriOI GRGCYC 2 cut(s) 239, 578
Fsp4HI GCNGC 8 cut(s) 88, 192, 195, 305, 344, 358, 494, 653
FspBI CTAG 1 cut(s) 657
GlaI GCGC 1 cut(s) 334
GluI GCNGC 8 cut(s) 88, 192, 195, 305, 344, 358, 494, 653
GsaI CCCAGC 3 cut(s) 15, 210, 388
HaeIII GGCC 4 cut(s) 90, 246, 360, 679
HapII CCGG 7 cut(s) 57, 102, 108, 213, 239, 247, 260
HgaI GACGC 1 cut(s) 360
HhaI GCGC 1 cut(s) 335
Hin1I GRCGYC 1 cut(s) 371
Hin1II CATG 2 cut(s) 554, 607
Hin6I GCGC 1 cut(s) 333
HinP1I GCGC 1 cut(s) 333
HinfI GANTC 1 cut(s) 202
HpaII CCGG 7 cut(s) 57, 102, 108, 213, 239, 247, 260
HphI GGTGA 1 cut(s) 151
Hpy166II GTNNAC 3 cut(s) 351, 378, 439
Hpy188I TCNGA 4 cut(s) 266, 413, 564, 625
Hpy188III TCNNGA 4 cut(s) 40, 122, 143, 285
Hpy8I GTNNAC 3 cut(s) 351, 378, 439
Hpy99I CGWCG 1 cut(s) 376
HpyAV CCTTC 1 cut(s) 236
HpyCH4III ACNGT 3 cut(s) 154, 273, 716
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 4 cut(s) 197, 343, 395, 646
HpyF10VI GCNNNNNNNGC 5 cut(s) 191, 243, 493, 499, 652
HpySE526I ACGT 1 cut(s) 36
Hsp92I GRCGYC 1 cut(s) 371
Hsp92II CATG 2 cut(s) 554, 607
HspAI GCGC 1 cut(s) 333
KroI GCCGGC 1 cut(s) 107
KroNI GCCGGC 1 cut(s) 109
LmnI GCTCC 3 cut(s) 27, 215, 708
Lsp1109I GCAGC 6 cut(s) 178, 181, 291, 355, 505, 664
MaeI CTAG 1 cut(s) 657
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 2 cut(s) 157, 215
MboII GAAGA 3 cut(s) 69, 300, 612
MhlI GDGCHC 3 cut(s) 239, 423, 578
MluCI AATT 3 cut(s) 400, 682, 688
MmeI TCCRAC 2 cut(s) 30, 646
MnlI CCTC 4 cut(s) 62, 77, 109, 703
MroNI GCCGGC 1 cut(s) 107
MseI TTAA 1 cut(s) 569
MslI CAYNNNNRTG 1 cut(s) 602
MspI CCGG 7 cut(s) 57, 102, 108, 213, 239, 247, 260
MspR9I CCNGG 5 cut(s) 239, 248, 277, 390, 468
MvaI CCWGG 3 cut(s) 277, 390, 468
MvnI CGCG 1 cut(s) 333
MwoI GCNNNNNNNGC 5 cut(s) 191, 243, 493, 499, 652
NaeI GCCGGC 1 cut(s) 109
NciI CCSGG 2 cut(s) 239, 248
NgoMIV GCCGGC 1 cut(s) 107
NlaIII CATG 2 cut(s) 554, 607
NlaIV GGNNCC 3 cut(s) 23, 106, 462
NmuCI GTSAC 1 cut(s) 157
NspV TTCGAA 1 cut(s) 686
PceI AGGCCT 1 cut(s) 679
PdiI GCCGGC 1 cut(s) 109
PfeI GAWTC 1 cut(s) 202
PflMI CCANNNNNTGG 1 cut(s) 18
PkrI GCNGC 8 cut(s) 89, 193, 196, 306, 345, 359, 495, 654
PshBI ATTAAT 1 cut(s) 569
Psp124BI GAGCTC 1 cut(s) 578
Psp6I CCWGG 3 cut(s) 275, 388, 466
PspFI CCCAGC 3 cut(s) 11, 206, 384
PspGI CCWGG 3 cut(s) 275, 388, 466
PspN4I GGNNCC 3 cut(s) 23, 106, 462
PspPI GGNCC 3 cut(s) 262, 273, 359
PstNI CAGNNNCTG 2 cut(s) 18, 188
RsaI GTAC 2 cut(s) 367, 473
RsaNI GTAC 2 cut(s) 366, 472
RseI CAYNNNNRTG 1 cut(s) 602
Rsr2I CGGWCCG 1 cut(s) 262
RsrII CGGWCCG 1 cut(s) 262
SacI GAGCTC 1 cut(s) 578
SaqAI TTAA 1 cut(s) 569
SatI GCNGC 8 cut(s) 88, 192, 195, 305, 344, 358, 494, 653
Sau96I GGNCC 3 cut(s) 262, 273, 359
ScrFI CCNGG 5 cut(s) 239, 248, 277, 390, 468
SduI GDGCHC 3 cut(s) 239, 423, 578
SetI ASST 8 cut(s) 39, 133, 187, 212, 233, 469, 489, 578
SfcI CTRYAG 2 cut(s) 180, 482
SfuI TTCGAA 1 cut(s) 686
SinI GGWCC 2 cut(s) 262, 273
SmiMI CAYNNNNRTG 1 cut(s) 602
SmlI CTYRAG 1 cut(s) 232
SmoI CTYRAG 1 cut(s) 232
Sse9I AATT 3 cut(s) 400, 682, 688
SseBI AGGCCT 1 cut(s) 679
SsiI CCGC 3 cut(s) 87, 177, 357
SspMI CTAG 1 cut(s) 657
SstI GAGCTC 1 cut(s) 578
StuI AGGCCT 1 cut(s) 679
StyD4I CCNGG 5 cut(s) 237, 246, 275, 388, 466
TaaI ACNGT 3 cut(s) 154, 273, 716
TaiI ACGT 1 cut(s) 39
TaqI TCGA 1 cut(s) 686
TaqII GACCGA 1 cut(s) 107
TasI AATT 3 cut(s) 400, 682, 688
TauI GCSGC 2 cut(s) 90, 360
TfiI GAWTC 1 cut(s) 202
Tru1I TTAA 1 cut(s) 569
Tru9I TTAA 1 cut(s) 569
TscAI CASTG 6 cut(s) 157, 325, 358, 459, 528, 547
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 6 cut(s) 191, 194, 304, 343, 493, 652
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 1 cut(s) 603
TspRI CASTG 6 cut(s) 157, 325, 358, 459, 528, 547
Van91I CCANNNNNTGG 1 cut(s) 18
VpaK11BI GGWCC 2 cut(s) 262, 273
VspI ATTAAT 1 cut(s) 569
XapI RAATTY 1 cut(s) 688
XspI CTAG 1 cut(s) 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.