Rroxscaffold_2G00094950

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0015164
Physical Location & Seq
Forward (+)
16287119 .. 16287868
750 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00094950.1

Sequence Viewer

Length: 750 bp
ATGGCCCTGAGTGGAACCATGTCCAACCCCAGCGACTGGCTCCAATACTACAACGTCCAGAACAACACCCTCTCCGGTCAAGCCCTCCCTTTGTCGTCCCACGGCGGCCACTTGTCCTCCGGTGCCGGCTTGTTCGGTCAAGACCAAGCTGTCTCTCATCACGAAGCCACTGTCACCACCACCACCACCACCACCACCGCTACAGCTTCTGCTGCGGCACCGAATCCCAACTCCAGTAACAACACCAACAGCTTGAGCCCGGAAGGCCGGGTTTCCAAGCCGGTCCGAAAACGGTCCAGGGCTTCCAGAAGAACCCCCACCACACTGCTCAACACCGACACTGCGAACTTTCGCGCTATGGTGCAGCAGTTCACTGGCGGCCCAAGTACGGCGTCGTTTACCACCCAGCCTGGTGCAACCAATTTCAGTTTCGGACTTGGGGCCAGACAAGGGTTTGTGAACCCTAATGCTTCAGTGATGGTGCCACCTGGGTACAACCATCTACAGCTTCAGCAGCAACAGCAAAACCCGTATCTGCTTTCACTGAACAACAATAATACCAGTGATAATCATGGGTTTGTTCAGAGATTAATGAGCTCGTCATCATCGGCAAGACCCACAAACATGGGGGTTTCATTTTCTTCAGATGAGTTTTCGTCCCAAGTGCAAGGGCAGCCTAGTCTGGTTGGAAGTGGTAGGCCTAATTCGAATTCCTCCAATGAGAACAGGAGCAACAGTTTCTTGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

249

Amino Acids

26.41

Weight (kDa)

10.09

Isoelectric Point (pI)

43.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 105 - 130 5.7e-10 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015164)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22160 AT4G15120
fragaria_vesca FvH4_6g39500
prunus_persica Prupe.3G185800_v2.0.a1
pyrus_communis pycom09g06070 pycom17g12150
rosa_chinensis RchiOBHm_Chr2g0153531
rosa_laevigata RLG00000020707
rosa_multiflora Rmu_sc0003976.1_g000009
rosa_roxburghii Rroxscaffold_2G00094950
rosa_rugosa Rorug02G0439000
rosa_samantha Rh2AG503000 Rh2BG513700 Rh2CG488800 Rh2DG525400
rosa_wichuraiana Rw2G041290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 149
AccB1I GGYRCC 3 cut(s) 122, 217, 481
AccB7I CCANNNNNTGG 1 cut(s) 36
AccII CGCG 1 cut(s) 354
AciI CCGC 4 cut(s) 105, 198, 215, 378
AcoI YGGCCR 1 cut(s) 106
AcsI RAATTY 1 cut(s) 709
AcuI CTGAAG 3 cut(s) 456, 494, 627
AcyI GRCGYC 1 cut(s) 392
AfaI GTAC 2 cut(s) 388, 494
AfiI CCNNNNNNNGG 3 cut(s) 36, 388, 450
AjnI CCWGG 3 cut(s) 296, 409, 487
AjuI GAANNNNNNNTTGG 2 cut(s) 413, 445
AluBI AGCT 5 cut(s) 149, 206, 252, 508, 597
AluI AGCT 5 cut(s) 149, 206, 252, 508, 597
Alw21I GWGCWC 1 cut(s) 599
Alw26I GTCTC 1 cut(s) 157
AlwNI CAGNNNCTG 2 cut(s) 36, 209
AoxI GGCC 6 cut(s) 3, 106, 265, 379, 441, 698
ApeKI GCWGC 4 cut(s) 212, 364, 514, 673
ApoI RAATTY 1 cut(s) 709
ArsI GACNNNNNNTTYG 2 cut(s) 156, 188
AseI ATTAAT 1 cut(s) 590
AspLEI GCGC 1 cut(s) 356
AspS9I GGNCC 5 cut(s) 4, 283, 294, 380, 441
AsuC2I CCSGG 2 cut(s) 260, 269
AsuHPI GGTGA 1 cut(s) 166
AsuII TTCGAA 1 cut(s) 707
AvaII GGWCC 2 cut(s) 283, 294
BanI GGYRCC 3 cut(s) 122, 217, 481
BanII GRGCYC 2 cut(s) 260, 599
Bbv12I GWGCWC 1 cut(s) 599
BbvI GCAGC 4 cut(s) 199, 376, 526, 685
BccI CCATC 2 cut(s) 472, 507
BceAI ACGGC 2 cut(s) 118, 405
BciT130I CCWGG 3 cut(s) 298, 411, 489
BcnI CCSGG 2 cut(s) 260, 269
BcoDI GTCTC 1 cut(s) 157
BfaI CTAG 1 cut(s) 678
BfmI CTRYAG 2 cut(s) 201, 503
BglI GCCNNNNNGGC 1 cut(s) 264
BisI GCNGC 7 cut(s) 106, 213, 216, 365, 379, 515, 674
BlsI GCNGC 7 cut(s) 107, 214, 217, 366, 380, 516, 675
Bme1390I CCNGG 5 cut(s) 260, 269, 298, 411, 489
Bme18I GGWCC 2 cut(s) 283, 294
BmgT120I GGNCC 5 cut(s) 4, 283, 294, 380, 441
BmiI GGNNCC 6 cut(s) 16, 41, 124, 219, 442, 483
BmrFI CCNGG 5 cut(s) 260, 269, 298, 411, 489
BpmI CTGGAG 1 cut(s) 217
Bpu14I TTCGAA 1 cut(s) 707
BpuEI CTTGAG 1 cut(s) 274
BpuMI CCSGG 2 cut(s) 260, 269
BsaHI GRCGYC 1 cut(s) 392
BsaJI CCNNGG 3 cut(s) 100, 297, 488
BsaWI WCCGGW 2 cut(s) 74, 119
BsaXI ACNNNNNCTCC 5 cut(s) 56, 86, 101, 131, 721
Bsc4I CCNNNNNNNGG 3 cut(s) 36, 388, 450
Bse118I RCCGGY 2 cut(s) 125, 280
Bse1I ACTGG 4 cut(s) 41, 234, 379, 561
BseBI CCWGG 3 cut(s) 298, 411, 489
BseDI CCNNGG 3 cut(s) 100, 297, 488
BseLI CCNNNNNNNGG 3 cut(s) 36, 388, 450
BseNI ACTGG 4 cut(s) 41, 234, 379, 561
BseXI GCAGC 4 cut(s) 199, 376, 526, 685
BseYI CCCAGC 2 cut(s) 29, 405
BsgI GTGCAG 1 cut(s) 383
Bsh1236I CGCG 1 cut(s) 354
BshFI GGCC 6 cut(s) 5, 108, 267, 381, 443, 700
BshNI GGYRCC 3 cut(s) 122, 217, 481
BsiHKAI GWGCWC 1 cut(s) 599
BsiSI CCGG 6 cut(s) 75, 120, 126, 260, 268, 281
BslFI GGGAC 2 cut(s) 82, 643
BslI CCNNNNNNNGG 3 cut(s) 36, 388, 450
BsmAI GTCTC 1 cut(s) 157
BsmFI GGGAC 2 cut(s) 82, 643
BsnI GGCC 6 cut(s) 5, 108, 267, 381, 443, 700
Bsp119I TTCGAA 1 cut(s) 707
Bsp1286I GDGCHC 2 cut(s) 260, 599
BspACI CCGC 4 cut(s) 105, 198, 215, 378
BspANI GGCC 6 cut(s) 5, 108, 267, 381, 443, 700
BspFNI CGCG 1 cut(s) 354
BspLI GGNNCC 6 cut(s) 16, 41, 124, 219, 442, 483
BspT104I TTCGAA 1 cut(s) 707
BspT107I GGYRCC 3 cut(s) 122, 217, 481
BsrFI RCCGGY 2 cut(s) 125, 280
BsrI ACTGG 4 cut(s) 41, 234, 379, 561
BssAI RCCGGY 2 cut(s) 125, 280
BssECI CCNNGG 3 cut(s) 100, 297, 488
BssNI GRCGYC 1 cut(s) 392
Bst2UI CCWGG 3 cut(s) 298, 411, 489
Bst4CI ACNGT 3 cut(s) 172, 294, 737
BstACI GRCGYC 1 cut(s) 392
BstBI TTCGAA 1 cut(s) 707
BstC8I GCNNGC 1 cut(s) 127
BstDEI CTNAG 1 cut(s) 8
BstDSI CCRYGG 1 cut(s) 100
BstFNI CGCG 1 cut(s) 354
BstHHI GCGC 1 cut(s) 356
BstMAI GTCTC 1 cut(s) 157
BstMWI GCNNNNNNNGC 5 cut(s) 212, 264, 514, 520, 673
BstNI CCWGG 3 cut(s) 298, 411, 489
BstSCI CCNGG 5 cut(s) 258, 267, 296, 409, 487
BstSFI CTRYAG 2 cut(s) 201, 503
BstUI CGCG 1 cut(s) 354
BstV1I GCAGC 4 cut(s) 199, 376, 526, 685
BstXI CCANNNNNNTGG 1 cut(s) 625
BsuRI GGCC 6 cut(s) 5, 108, 267, 381, 443, 700
BtgI CCRYGG 1 cut(s) 100
BtsI GCAGTG 2 cut(s) 323, 339
BtsIMutI CAGTG 7 cut(s) 168, 323, 339, 372, 480, 542, 568
Cac8I GCNNGC 1 cut(s) 127
CaiI CAGNNNCTG 2 cut(s) 36, 209
CfoI GCGC 1 cut(s) 356
Cfr10I RCCGGY 2 cut(s) 125, 280
Cfr13I GGNCC 5 cut(s) 4, 283, 294, 380, 441
CpoI CGGWCCG 1 cut(s) 283
CseI GACGC 1 cut(s) 381
Csp6I GTAC 2 cut(s) 387, 493
CspI CGGWCCG 1 cut(s) 283
CviAII CATG 3 cut(s) 19, 572, 625
CviQI GTAC 2 cut(s) 387, 493
DdeI CTNAG 1 cut(s) 8
DrdI GACNNNNNNGTC 1 cut(s) 149
DseDI GACNNNNNNGTC 1 cut(s) 149
EaeI YGGCCR 1 cut(s) 106
Ecl136II GAGCTC 1 cut(s) 597
Eco147I AGGCCT 1 cut(s) 700
Eco24I GRGCYC 2 cut(s) 260, 599
Eco47I GGWCC 2 cut(s) 283, 294
Eco53kI GAGCTC 1 cut(s) 597
Eco57I CTGAAG 3 cut(s) 456, 494, 627
EcoICRI GAGCTC 1 cut(s) 597
EcoRI GAATTC 1 cut(s) 709
EcoRII CCWGG 3 cut(s) 296, 409, 487
EcoT38I GRGCYC 2 cut(s) 260, 599
FaeI CATG 3 cut(s) 22, 575, 628
FaiI YATR 4 cut(s) 20, 359, 573, 626
FaqI GGGAC 2 cut(s) 82, 643
FatI CATG 3 cut(s) 18, 571, 624
Fnu4HI GCNGC 7 cut(s) 106, 213, 216, 365, 379, 515, 674
FriOI GRGCYC 2 cut(s) 260, 599
Fsp4HI GCNGC 7 cut(s) 106, 213, 216, 365, 379, 515, 674
FspBI CTAG 1 cut(s) 678
GlaI GCGC 1 cut(s) 355
GluI GCNGC 7 cut(s) 106, 213, 216, 365, 379, 515, 674
GsaI CCCAGC 2 cut(s) 33, 409
GsuI CTGGAG 1 cut(s) 217
HaeIII GGCC 6 cut(s) 5, 108, 267, 381, 443, 700
HapII CCGG 6 cut(s) 75, 120, 126, 260, 268, 281
HgaI GACGC 1 cut(s) 381
HhaI GCGC 1 cut(s) 356
Hin1I GRCGYC 1 cut(s) 392
Hin1II CATG 3 cut(s) 22, 575, 628
Hin6I GCGC 1 cut(s) 354
HinP1I GCGC 1 cut(s) 354
HinfI GANTC 1 cut(s) 223
HpaII CCGG 6 cut(s) 75, 120, 126, 260, 268, 281
HphI GGTGA 1 cut(s) 166
Hpy166II GTNNAC 3 cut(s) 372, 399, 460
Hpy188I TCNGA 4 cut(s) 287, 434, 585, 646
Hpy188III TCNNGA 4 cut(s) 58, 140, 161, 306
Hpy8I GTNNAC 3 cut(s) 372, 399, 460
Hpy99I CGWCG 1 cut(s) 397
HpyAV CCTTC 1 cut(s) 257
HpyCH4III ACNGT 3 cut(s) 172, 294, 737
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 3 cut(s) 364, 416, 667
HpyF10VI GCNNNNNNNGC 5 cut(s) 212, 264, 514, 520, 673
HpyF3I CTNAG 1 cut(s) 8
HpySE526I ACGT 1 cut(s) 54
Hsp92I GRCGYC 1 cut(s) 392
Hsp92II CATG 3 cut(s) 22, 575, 628
HspAI GCGC 1 cut(s) 354
KroI GCCGGC 1 cut(s) 125
KroNI GCCGGC 1 cut(s) 127
LmnI GCTCC 2 cut(s) 45, 729
Lsp1109I GCAGC 4 cut(s) 199, 376, 526, 685
MaeI CTAG 1 cut(s) 678
MaeII ACGT 1 cut(s) 54
MaeIII GTNAC 2 cut(s) 172, 236
MboII GAAGA 2 cut(s) 321, 633
MhlI GDGCHC 2 cut(s) 260, 599
MluCI AATT 3 cut(s) 421, 703, 709
MmeI TCCRAC 2 cut(s) 48, 667
MnlI CCTC 4 cut(s) 80, 95, 127, 724
MroNI GCCGGC 1 cut(s) 125
MseI TTAA 1 cut(s) 590
MslI CAYNNNNRTG 1 cut(s) 623
MspI CCGG 6 cut(s) 75, 120, 126, 260, 268, 281
MspR9I CCNGG 5 cut(s) 260, 269, 298, 411, 489
MvaI CCWGG 3 cut(s) 298, 411, 489
MvnI CGCG 1 cut(s) 354
MwoI GCNNNNNNNGC 5 cut(s) 212, 264, 514, 520, 673
NaeI GCCGGC 1 cut(s) 127
NciI CCSGG 2 cut(s) 260, 269
NgoMIV GCCGGC 1 cut(s) 125
NlaIII CATG 3 cut(s) 22, 575, 628
NlaIV GGNNCC 6 cut(s) 16, 41, 124, 219, 442, 483
NmuCI GTSAC 1 cut(s) 172
NspV TTCGAA 1 cut(s) 707
PceI AGGCCT 1 cut(s) 700
PdiI GCCGGC 1 cut(s) 127
PfeI GAWTC 1 cut(s) 223
PflMI CCANNNNNTGG 1 cut(s) 36
PkrI GCNGC 7 cut(s) 107, 214, 217, 366, 380, 516, 675
PshBI ATTAAT 1 cut(s) 590
Psp124BI GAGCTC 1 cut(s) 599
Psp6I CCWGG 3 cut(s) 296, 409, 487
PspFI CCCAGC 2 cut(s) 29, 405
PspGI CCWGG 3 cut(s) 296, 409, 487
PspN4I GGNNCC 6 cut(s) 16, 41, 124, 219, 442, 483
PspPI GGNCC 5 cut(s) 4, 283, 294, 380, 441
PstNI CAGNNNCTG 2 cut(s) 36, 209
RsaI GTAC 2 cut(s) 388, 494
RsaNI GTAC 2 cut(s) 387, 493
RseI CAYNNNNRTG 1 cut(s) 623
Rsr2I CGGWCCG 1 cut(s) 283
RsrII CGGWCCG 1 cut(s) 283
SacI GAGCTC 1 cut(s) 599
SaqAI TTAA 1 cut(s) 590
SatI GCNGC 7 cut(s) 106, 213, 216, 365, 379, 515, 674
Sau96I GGNCC 5 cut(s) 4, 283, 294, 380, 441
ScrFI CCNGG 5 cut(s) 260, 269, 298, 411, 489
SduI GDGCHC 2 cut(s) 260, 599
SetI ASST 7 cut(s) 57, 151, 208, 254, 490, 510, 599
SfcI CTRYAG 2 cut(s) 201, 503
SfuI TTCGAA 1 cut(s) 707
SinI GGWCC 2 cut(s) 283, 294
SmiMI CAYNNNNRTG 1 cut(s) 623
SmlI CTYRAG 1 cut(s) 253
SmoI CTYRAG 1 cut(s) 253
Sse9I AATT 3 cut(s) 421, 703, 709
SseBI AGGCCT 1 cut(s) 700
SsiI CCGC 4 cut(s) 105, 198, 215, 378
SspMI CTAG 1 cut(s) 678
SstI GAGCTC 1 cut(s) 599
StuI AGGCCT 1 cut(s) 700
StyD4I CCNGG 5 cut(s) 258, 267, 296, 409, 487
TaaI ACNGT 3 cut(s) 172, 294, 737
TaiI ACGT 1 cut(s) 57
TaqI TCGA 1 cut(s) 707
TaqII GACCGA 1 cut(s) 125
TasI AATT 3 cut(s) 421, 703, 709
TauI GCSGC 3 cut(s) 108, 218, 381
TfiI GAWTC 1 cut(s) 223
Tru1I TTAA 1 cut(s) 590
Tru9I TTAA 1 cut(s) 590
TscAI CASTG 7 cut(s) 175, 330, 346, 379, 480, 549, 568
TseFI GTSAC 1 cut(s) 172
TseI GCWGC 4 cut(s) 212, 364, 514, 673
Tsp45I GTSAC 1 cut(s) 172
TspDTI ATGAA 1 cut(s) 624
TspRI CASTG 7 cut(s) 175, 330, 346, 379, 480, 549, 568
Van91I CCANNNNNTGG 1 cut(s) 36
VpaK11BI GGWCC 2 cut(s) 283, 294
VspI ATTAAT 1 cut(s) 590
XapI RAATTY 1 cut(s) 709
XspI CTAG 1 cut(s) 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.