AT3G22540

Protein of unknown function (DUF1677)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012208
Physical Location & Seq
Reverse (-)
7984076 .. 7984833
758 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G22540.1

Sequence Viewer

Length: 333 bp
ATGGAGATCGAATCCGTGAGATGTGAGTGTTGTGGGTTAATGGAAGATTGCACACAAGACTACATTAGTGAGGTCAAATCTAACTTCGACAACAAGTGGCTCTGTGGTCTCTGCTCCGAAGCCGTGAGGGACGAAGTGAGTCGCCGGAAGATGACCACAGTTGATGAAGCCGTCAAGGCCCACGTGTCGTTTTGTGGCAAGTTTAAAAAAGATAATCCGGCGGTTCATGTCGCTGATGGTATGAGGCAGATGCTACGGAGGAGGTCCGGTGAGTTGACGAATTCCTCTACGTCCAAGAAGTTTGGTAGATCTAACACCACCAAGTTGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1677

Protein Analysis

110

Amino Acids

12.51

Weight (kDa)

8.5

Isoelectric Point (pI)

58.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1677 PF07911 3 - 90 6.8e-37 Protein of unknown function (DUF1677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22540 AT4G14819
fragaria_vesca FvH4_4g16260
malus_domestica MD07G1114800.v1.1 MD13G1195100.v1.1 MD16G1195800.v1.1
prunus_persica Prupe.1G015800_v2.0.a1
pyrus_communis pycom13g16730 pycom16g16500
rosa_chinensis RchiOBHm_Chr4g0415821
rosa_laevigata RLG00000008037
rosa_multiflora Rmu_sc0002438.1_g000024
rosa_roxburghii Rroxscaffold_5G00359670
rosa_rugosa Rorug04G0137000
rosa_samantha Rh4AG198200 Rh4BG196200 Rh4CG209300 Rh4DG196000
rosa_wichuraiana Rw4G016810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 221
AcsI RAATTY 1 cut(s) 280
AcvI CACGTG 1 cut(s) 184
AfaI GTAC 1 cut(s) 329
AflIII ACRYGT 1 cut(s) 183
Alw26I GTCTC 1 cut(s) 113
AoxI GGCC 1 cut(s) 177
ApoI RAATTY 1 cut(s) 280
AspS9I GGNCC 2 cut(s) 178, 264
AsuHPI GGTGA 1 cut(s) 281
AvaII GGWCC 1 cut(s) 264
BbrPI CACGTG 1 cut(s) 184
BccI CCATC 1 cut(s) 230
BceAI ACGGC 2 cut(s) 107, 155
BcoDI GTCTC 1 cut(s) 113
BglI GCCNNNNNGGC 1 cut(s) 176
BglII AGATCT 1 cut(s) 308
Bme18I GGWCC 1 cut(s) 264
BmgT120I GGNCC 2 cut(s) 178, 264
BmsI GCATC 1 cut(s) 240
BsaAI YACGTR 1 cut(s) 184
BsaI GGTCTC 1 cut(s) 113
BsaWI WCCGGW 1 cut(s) 266
BsaXI ACNNNNNCTCC 2 cut(s) 253, 283
BseRI GAGGAG 1 cut(s) 274
BshFI GGCC 1 cut(s) 179
BsiSI CCGG 3 cut(s) 145, 218, 267
BslFI GGGAC 1 cut(s) 143
BsmAI GTCTC 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 143
BsnI GGCC 1 cut(s) 179
Bso31I GGTCTC 1 cut(s) 113
Bsp143I GATC 2 cut(s) 6, 308
BspACI CCGC 1 cut(s) 221
BspANI GGCC 1 cut(s) 179
BspTNI GGTCTC 1 cut(s) 113
BssMI GATC 2 cut(s) 6, 308
Bst4CI ACNGT 1 cut(s) 160
BstBAI YACGTR 1 cut(s) 184
BstKTI GATC 2 cut(s) 9, 311
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 2 cut(s) 6, 308
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstX2I RGATCY 1 cut(s) 308
BstYI RGATCY 1 cut(s) 308
BsuRI GGCC 1 cut(s) 179
Cfr13I GGNCC 2 cut(s) 178, 264
Csp6I GTAC 1 cut(s) 328
CviAII CATG 1 cut(s) 227
CviJI RGCY 4 cut(s) 100, 122, 170, 179
CviKI_1 RGCY 4 cut(s) 100, 122, 170, 179
CviQI GTAC 1 cut(s) 328
DpnI GATC 2 cut(s) 8, 310
DpnII GATC 2 cut(s) 6, 308
DraI TTTAAA 1 cut(s) 205
Eco31I GGTCTC 1 cut(s) 113
Eco47I GGWCC 1 cut(s) 264
Eco72I CACGTG 1 cut(s) 184
EcoRI GAATTC 1 cut(s) 280
FaeI CATG 1 cut(s) 230
FaiI YATR 2 cut(s) 228, 242
FaqI GGGAC 1 cut(s) 143
FatI CATG 1 cut(s) 226
HaeIII GGCC 1 cut(s) 179
HapII CCGG 3 cut(s) 145, 218, 267
Hin1II CATG 1 cut(s) 230
HincII GTYRAC 1 cut(s) 276
HindII GTYRAC 1 cut(s) 276
HinfI GANTC 2 cut(s) 11, 139
HpaII CCGG 3 cut(s) 145, 218, 267
HphI GGTGA 1 cut(s) 281
Hpy166II GTNNAC 1 cut(s) 276
Hpy188I TCNGA 1 cut(s) 118
Hpy8I GTNNAC 1 cut(s) 276
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4IV ACGT 2 cut(s) 183, 290
HpyCH4V TGCA 1 cut(s) 51
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
HpySE526I ACGT 2 cut(s) 183, 290
Hsp92II CATG 1 cut(s) 230
Kzo9I GATC 2 cut(s) 6, 308
LmnI GCTCC 1 cut(s) 119
LpnPI CCDG 3 cut(s) 158, 231, 280
LweI GCATC 1 cut(s) 240
MaeII ACGT 2 cut(s) 183, 290
MalI GATC 2 cut(s) 8, 310
MboI GATC 2 cut(s) 6, 308
MboII GAAGA 2 cut(s) 56, 160
MflI RGATCY 1 cut(s) 308
MluCI AATT 1 cut(s) 280
MlyI GAGTC 1 cut(s) 148
MnlI CCTC 6 cut(s) 64, 120, 237, 252, 255, 295
MseI TTAA 2 cut(s) 38, 204
MspI CCGG 3 cut(s) 145, 218, 267
MwoI GCNNNNNNNGC 1 cut(s) 176
NdeII GATC 2 cut(s) 6, 308
NlaIII CATG 1 cut(s) 230
PfeI GAWTC 1 cut(s) 11
PleI GAGTC 1 cut(s) 147
PmaCI CACGTG 1 cut(s) 184
PmlI CACGTG 1 cut(s) 184
PpsI GAGTC 1 cut(s) 147
Ppu21I YACGTR 1 cut(s) 184
PspCI CACGTG 1 cut(s) 184
PspPI GGNCC 2 cut(s) 178, 264
PsuI RGATCY 1 cut(s) 308
RsaI GTAC 1 cut(s) 329
RsaNI GTAC 1 cut(s) 328
SaqAI TTAA 2 cut(s) 38, 204
Sau3AI GATC 2 cut(s) 6, 308
Sau96I GGNCC 2 cut(s) 178, 264
SchI GAGTC 1 cut(s) 148
SetI ASST 4 cut(s) 75, 186, 266, 293
SfaNI GCATC 1 cut(s) 240
SinI GGWCC 1 cut(s) 264
Sse9I AATT 1 cut(s) 280
SsiI CCGC 1 cut(s) 221
TaaI ACNGT 1 cut(s) 160
TaiI ACGT 2 cut(s) 186, 293
TaqI TCGA 2 cut(s) 9, 87
TasI AATT 1 cut(s) 280
TatI WGTACW 1 cut(s) 327
TfiI GAWTC 1 cut(s) 11
Tru1I TTAA 2 cut(s) 38, 204
Tru9I TTAA 2 cut(s) 38, 204
TspDTI ATGAA 2 cut(s) 180, 215
TspGWI ACGGA 2 cut(s) 4, 271
VpaK11BI GGWCC 1 cut(s) 264
XapI RAATTY 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.