Rh4BG196200

Protein of unknown function (DUF1677)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0012208
Physical Location & Seq
Forward (+)
33843662 .. 33845447
1786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG196200.1

Sequence Viewer

Length: 447 bp
ATGGAGATTGAGATGGTCAAGTGCGAGTGTTGTGGACTAAAAGAGGATTGCACGCAAGACTACATCACTCAAGTGAAGGCGAAATTCGACGGCAAATGGCTCTGTGGGTTGTGCTCGGAAGCAGTAAGAGACGAGGTTAGCAAAGGCAAGAAGCCATTCGGCATGGAAGAAGCTGTGAGAGCTCACATGTCATTTTGTGGTAAATTCAAATCCAACCCTGCAGTTCGAGTTGCAGATGGGATGAGACAGATGCTTAGAAGAAGGTCAGACATGTCCTCATCATCGCCATCTTCGTCTTCTTCGTCTTCATCGAAGAAGTATACAAGATCATCAAGCACATCCCAAGGGATGTTTTCCTTTATTATGATCCATTTCATCATGATGGGTATGACGTTGCTCTGCTTTTCTTGGCTACAAAGACGAACAAAAGTCCAGGGTAAATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1677

Protein Analysis

148

Amino Acids

16.67

Weight (kDa)

9.4

Isoelectric Point (pI)

69.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1677 PF07911 3 - 90 2.2e-38 Protein of unknown function (DUF1677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22540 AT4G14819
fragaria_vesca FvH4_4g16260
malus_domestica MD07G1114800.v1.1 MD13G1195100.v1.1 MD16G1195800.v1.1
prunus_persica Prupe.1G015800_v2.0.a1
pyrus_communis pycom13g16730 pycom16g16500
rosa_chinensis RchiOBHm_Chr4g0415821
rosa_laevigata RLG00000008037
rosa_multiflora Rmu_sc0002438.1_g000024
rosa_roxburghii Rroxscaffold_5G00359670
rosa_rugosa Rorug04G0137000
rosa_samantha Rh4AG198200 Rh4BG196200 Rh4CG209300 Rh4DG196000
rosa_wichuraiana Rw4G016810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 320
AclWI GGATC 1 cut(s) 361
AcsI RAATTY 2 cut(s) 83, 203
AflIII ACRYGT 2 cut(s) 186, 270
AgsI TTSAA 1 cut(s) 208
AjnI CCWGG 1 cut(s) 432
AleI CACNNNNGTG 1 cut(s) 71
AluBI AGCT 2 cut(s) 173, 182
AluI AGCT 2 cut(s) 173, 182
Alw21I GWGCWC 2 cut(s) 116, 184
Alw26I GTCTC 2 cut(s) 123, 238
AlwI GGATC 1 cut(s) 361
ApoI RAATTY 2 cut(s) 83, 203
Asp700I GAANNNNTTC 1 cut(s) 155
BanII GRGCYC 1 cut(s) 184
BbsI GAAGAC 2 cut(s) 288, 297
Bbv12I GWGCWC 2 cut(s) 116, 184
BccI CCATC 4 cut(s) 7, 230, 295, 376
BceAI ACGGC 1 cut(s) 106
BciT130I CCWGG 1 cut(s) 434
BcoDI GTCTC 2 cut(s) 123, 238
BfmI CTRYAG 1 cut(s) 219
Bme1390I CCNGG 1 cut(s) 434
BmrFI CCNGG 1 cut(s) 434
BmsI GCATC 1 cut(s) 240
BpiI GAAGAC 2 cut(s) 288, 297
BpuEI CTTGAG 1 cut(s) 54
BsaJI CCNNGG 2 cut(s) 343, 433
BseBI CCWGG 1 cut(s) 434
BseDI CCNNGG 2 cut(s) 343, 433
BseGI GGATG 3 cut(s) 246, 338, 354
BsiHKAI GWGCWC 2 cut(s) 116, 184
BsmAI GTCTC 2 cut(s) 123, 238
BsmBI CGTCTC 1 cut(s) 123
Bsp1286I GDGCHC 2 cut(s) 116, 184
Bsp143I GATC 2 cut(s) 326, 366
BspHI TCATGA 1 cut(s) 378
BspMAI CTGCAG 1 cut(s) 223
BspPI GGATC 1 cut(s) 361
BssECI CCNNGG 2 cut(s) 343, 433
BssMI GATC 2 cut(s) 326, 366
BssNAI GTATAC 1 cut(s) 321
BssT1I CCWWGG 1 cut(s) 343
Bst1107I GTATAC 1 cut(s) 321
Bst2UI CCWGG 1 cut(s) 434
BstC8I GCNNGC 1 cut(s) 53
BstDEI CTNAG 1 cut(s) 254
BstF5I GGATG 3 cut(s) 246, 338, 354
BstKTI GATC 2 cut(s) 329, 369
BstMAI GTCTC 2 cut(s) 123, 238
BstMBI GATC 2 cut(s) 326, 366
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstNI CCWGG 1 cut(s) 434
BstNSI RCATGY 2 cut(s) 190, 274
BstSCI CCNGG 1 cut(s) 432
BstSFI CTRYAG 1 cut(s) 219
BstV2I GAAGAC 2 cut(s) 288, 297
BstZ17I GTATAC 1 cut(s) 321
BtgZI GCGATG 1 cut(s) 267
BtsCI GGATG 3 cut(s) 246, 338, 354
Cac8I GCNNGC 1 cut(s) 53
CciI TCATGA 1 cut(s) 378
CviAII CATG 4 cut(s) 163, 187, 271, 379
CviJI RGCY 5 cut(s) 100, 154, 173, 182, 412
CviKI_1 RGCY 5 cut(s) 100, 154, 173, 182, 412
DdeI CTNAG 1 cut(s) 254
DpnI GATC 2 cut(s) 328, 368
DpnII GATC 2 cut(s) 326, 366
Ecl136II GAGCTC 1 cut(s) 182
Eco130I CCWWGG 1 cut(s) 343
Eco24I GRGCYC 1 cut(s) 184
Eco53kI GAGCTC 1 cut(s) 182
EcoICRI GAGCTC 1 cut(s) 182
EcoRII CCWGG 1 cut(s) 432
EcoT14I CCWWGG 1 cut(s) 343
EcoT38I GRGCYC 1 cut(s) 184
ErhI CCWWGG 1 cut(s) 343
Esp3I CGTCTC 1 cut(s) 123
FaeI CATG 4 cut(s) 166, 190, 274, 382
FaiI YATR 7 cut(s) 164, 188, 272, 321, 365, 380, 389
FatI CATG 4 cut(s) 162, 186, 270, 378
FblI GTMKAC 1 cut(s) 320
FokI GGATG 3 cut(s) 253, 325, 361
FriOI GRGCYC 1 cut(s) 184
Hin1II CATG 4 cut(s) 166, 190, 274, 382
Hpy166II GTNNAC 2 cut(s) 35, 321
Hpy188I TCNGA 2 cut(s) 118, 268
Hpy188III TCNNGA 1 cut(s) 379
Hpy8I GTNNAC 2 cut(s) 35, 321
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 2 cut(s) 70, 255
HpyCH4IV ACGT 1 cut(s) 392
HpyCH4V TGCA 3 cut(s) 51, 221, 233
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpyF3I CTNAG 1 cut(s) 254
HpySE526I ACGT 1 cut(s) 392
Hsp92II CATG 4 cut(s) 166, 190, 274, 382
Kzo9I GATC 2 cut(s) 326, 366
LpnPI CCDG 2 cut(s) 231, 419
LweI GCATC 1 cut(s) 240
MaeII ACGT 1 cut(s) 392
MalI GATC 2 cut(s) 328, 368
MboI GATC 2 cut(s) 326, 366
MboII GAAGA 7 cut(s) 179, 270, 282, 288, 291, 297, 325
MhlI GDGCHC 2 cut(s) 116, 184
MluCI AATT 2 cut(s) 83, 203
MmeI TCCRAC 1 cut(s) 237
MnlI CCTC 3 cut(s) 37, 127, 286
MroXI GAANNNNTTC 1 cut(s) 155
MseI TTAA 1 cut(s) 445
MslI CAYNNNNRTG 2 cut(s) 71, 380
MspR9I CCNGG 1 cut(s) 434
MvaI CCWGG 1 cut(s) 434
MwoI GCNNNNNNNGC 1 cut(s) 179
NdeII GATC 2 cut(s) 326, 366
NlaIII CATG 4 cut(s) 166, 190, 274, 382
NspI RCATGY 2 cut(s) 190, 274
OliI CACNNNNGTG 1 cut(s) 71
PagI TCATGA 1 cut(s) 378
PciI ACATGT 2 cut(s) 186, 270
PcsI WCGNNNNNNNCGW 3 cut(s) 290, 299, 308
PdmI GAANNNNTTC 1 cut(s) 155
PscI ACATGT 2 cut(s) 186, 270
Psp124BI GAGCTC 1 cut(s) 184
Psp6I CCWGG 1 cut(s) 432
PspGI CCWGG 1 cut(s) 432
PstI CTGCAG 1 cut(s) 223
RseI CAYNNNNRTG 2 cut(s) 71, 380
SacI GAGCTC 1 cut(s) 184
SaqAI TTAA 1 cut(s) 445
Sau3AI GATC 2 cut(s) 326, 366
ScrFI CCNGG 1 cut(s) 434
SduI GDGCHC 2 cut(s) 116, 184
SetI ASST 5 cut(s) 138, 175, 184, 266, 395
SfaNI GCATC 1 cut(s) 240
SfcI CTRYAG 1 cut(s) 219
SmiMI CAYNNNNRTG 2 cut(s) 71, 380
SmlI CTYRAG 1 cut(s) 69
SmoI CTYRAG 1 cut(s) 69
Sse9I AATT 2 cut(s) 83, 203
SstI GAGCTC 1 cut(s) 184
StyD4I CCNGG 1 cut(s) 432
StyI CCWWGG 1 cut(s) 343
TaiI ACGT 1 cut(s) 395
TaqI TCGA 3 cut(s) 87, 226, 311
TasI AATT 2 cut(s) 83, 203
Tru1I TTAA 1 cut(s) 445
Tru9I TTAA 1 cut(s) 445
TspDTI ATGAA 2 cut(s) 297, 364
XapI RAATTY 2 cut(s) 83, 203
XceI RCATGY 2 cut(s) 190, 274
XmiI GTMKAC 1 cut(s) 320
XmnI GAANNNNTTC 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.