RLG00000008037

Protein of unknown function (DUF1677)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0012208
Physical Location & Seq
Reverse (-)
24750483 .. 24751023
541 bp
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UTR
Exon/CDS
Intron
RLM00000008037

Sequence Viewer

Length: 432 bp
ATGGAGATTGAGATGGTCAAGTGCGATTGTTGTGGACTAAAAGAGGATTGCACGCAAGACTACATCACTCAAGTGAAGGAGAAATTCGACGGCAAATGGCTCTGTGGGTTGTGCTCGGAAGCAGTAAGAGACGAGGTTAGCAAAGGCAAGAAGCCATTCGGCATGGAAGAAGCTGTGAGAGCTCACATGTCATTTTGTGGTAAATTCAAATCCAACCCTGCAGTTCGAGTTGCAGATGGGATGAGGCAGATGCTTAGAAGAAGGTCAGACATGTCCTCATCATCGCCATCTTCGTCTTCATCGAAGAAGTATACAAGATCATCAAGCACATCCCAAGGGATGTTTTTCCTTTATTATGATCCATTTCATCATGATGGGTATGATGTTGCTCTGCTTTTCTTGGCTACAAAGACAAACAAAAGTCCAGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1677

Protein Analysis

144

Amino Acids

16.09

Weight (kDa)

8.66

Isoelectric Point (pI)

69.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1677 PF07911 3 - 90 1.9e-38 Protein of unknown function (DUF1677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22540 AT4G14819
fragaria_vesca FvH4_4g16260
malus_domestica MD07G1114800.v1.1 MD13G1195100.v1.1 MD16G1195800.v1.1
prunus_persica Prupe.1G015800_v2.0.a1
pyrus_communis pycom13g16730 pycom16g16500
rosa_chinensis RchiOBHm_Chr4g0415821
rosa_laevigata RLG00000008037
rosa_multiflora Rmu_sc0002438.1_g000024
rosa_roxburghii Rroxscaffold_5G00359670
rosa_rugosa Rorug04G0137000
rosa_samantha Rh4AG198200 Rh4BG196200 Rh4CG209300 Rh4DG196000
rosa_wichuraiana Rw4G016810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 311
AclWI GGATC 1 cut(s) 353
AcsI RAATTY 2 cut(s) 83, 203
AflIII ACRYGT 2 cut(s) 186, 270
AgsI TTSAA 1 cut(s) 208
AjnI CCWGG 1 cut(s) 424
AleI CACNNNNGTG 1 cut(s) 71
AluBI AGCT 2 cut(s) 173, 182
AluI AGCT 2 cut(s) 173, 182
Alw21I GWGCWC 2 cut(s) 116, 184
Alw26I GTCTC 1 cut(s) 123
AlwI GGATC 1 cut(s) 353
ApoI RAATTY 2 cut(s) 83, 203
Asp700I GAANNNNTTC 1 cut(s) 155
BanII GRGCYC 1 cut(s) 184
BbsI GAAGAC 1 cut(s) 288
Bbv12I GWGCWC 2 cut(s) 116, 184
BccI CCATC 4 cut(s) 7, 230, 295, 368
BceAI ACGGC 1 cut(s) 106
BciT130I CCWGG 1 cut(s) 426
BcoDI GTCTC 1 cut(s) 123
BfmI CTRYAG 1 cut(s) 219
Bme1390I CCNGG 1 cut(s) 426
BmrFI CCNGG 1 cut(s) 426
BmsI GCATC 1 cut(s) 240
BpiI GAAGAC 1 cut(s) 288
BpuEI CTTGAG 1 cut(s) 54
BsaJI CCNNGG 2 cut(s) 334, 425
BseBI CCWGG 1 cut(s) 426
BseDI CCNNGG 2 cut(s) 334, 425
BseGI GGATG 3 cut(s) 246, 329, 345
BsiHKAI GWGCWC 2 cut(s) 116, 184
BsmAI GTCTC 1 cut(s) 123
BsmBI CGTCTC 1 cut(s) 123
Bsp1286I GDGCHC 2 cut(s) 116, 184
Bsp143I GATC 2 cut(s) 317, 358
BspHI TCATGA 1 cut(s) 370
BspMAI CTGCAG 1 cut(s) 223
BspPI GGATC 1 cut(s) 353
BssECI CCNNGG 2 cut(s) 334, 425
BssMI GATC 2 cut(s) 317, 358
BssNAI GTATAC 1 cut(s) 312
BssT1I CCWWGG 1 cut(s) 334
Bst1107I GTATAC 1 cut(s) 312
Bst2UI CCWGG 1 cut(s) 426
BstC8I GCNNGC 1 cut(s) 53
BstDEI CTNAG 1 cut(s) 254
BstF5I GGATG 3 cut(s) 246, 329, 345
BstKTI GATC 2 cut(s) 320, 361
BstMAI GTCTC 1 cut(s) 123
BstMBI GATC 2 cut(s) 317, 358
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstNI CCWGG 1 cut(s) 426
BstNSI RCATGY 2 cut(s) 190, 274
BstSCI CCNGG 1 cut(s) 424
BstSFI CTRYAG 1 cut(s) 219
BstV2I GAAGAC 1 cut(s) 288
BstZ17I GTATAC 1 cut(s) 312
BtgZI GCGATG 1 cut(s) 267
BtsCI GGATG 3 cut(s) 246, 329, 345
Cac8I GCNNGC 1 cut(s) 53
CciI TCATGA 1 cut(s) 370
CviAII CATG 4 cut(s) 163, 187, 271, 371
CviJI RGCY 5 cut(s) 100, 154, 173, 182, 404
CviKI_1 RGCY 5 cut(s) 100, 154, 173, 182, 404
DdeI CTNAG 1 cut(s) 254
DpnI GATC 2 cut(s) 319, 360
DpnII GATC 2 cut(s) 317, 358
Ecl136II GAGCTC 1 cut(s) 182
Eco130I CCWWGG 1 cut(s) 334
Eco24I GRGCYC 1 cut(s) 184
Eco53kI GAGCTC 1 cut(s) 182
EcoICRI GAGCTC 1 cut(s) 182
EcoRII CCWGG 1 cut(s) 424
EcoT14I CCWWGG 1 cut(s) 334
EcoT38I GRGCYC 1 cut(s) 184
ErhI CCWWGG 1 cut(s) 334
Esp3I CGTCTC 1 cut(s) 123
FaeI CATG 4 cut(s) 166, 190, 274, 374
FaiI YATR 7 cut(s) 164, 188, 272, 312, 357, 372, 381
FatI CATG 4 cut(s) 162, 186, 270, 370
FblI GTMKAC 1 cut(s) 311
FokI GGATG 3 cut(s) 253, 316, 352
FriOI GRGCYC 1 cut(s) 184
Hin1II CATG 4 cut(s) 166, 190, 274, 374
Hpy166II GTNNAC 2 cut(s) 35, 312
Hpy188I TCNGA 2 cut(s) 118, 268
Hpy188III TCNNGA 1 cut(s) 371
Hpy8I GTNNAC 2 cut(s) 35, 312
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 2 cut(s) 70, 255
HpyCH4V TGCA 3 cut(s) 51, 221, 233
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpyF3I CTNAG 1 cut(s) 254
Hsp92II CATG 4 cut(s) 166, 190, 274, 374
Kzo9I GATC 2 cut(s) 317, 358
LpnPI CCDG 2 cut(s) 231, 411
LweI GCATC 1 cut(s) 240
MalI GATC 2 cut(s) 319, 360
MboI GATC 2 cut(s) 317, 358
MboII GAAGA 5 cut(s) 179, 270, 282, 288, 316
MhlI GDGCHC 2 cut(s) 116, 184
MluCI AATT 2 cut(s) 83, 203
MmeI TCCRAC 1 cut(s) 237
MnlI CCTC 4 cut(s) 37, 127, 237, 286
MroXI GAANNNNTTC 1 cut(s) 155
MslI CAYNNNNRTG 2 cut(s) 71, 372
MspR9I CCNGG 1 cut(s) 426
MvaI CCWGG 1 cut(s) 426
MwoI GCNNNNNNNGC 1 cut(s) 179
NdeII GATC 2 cut(s) 317, 358
NlaIII CATG 4 cut(s) 166, 190, 274, 374
NspI RCATGY 2 cut(s) 190, 274
OliI CACNNNNGTG 1 cut(s) 71
PagI TCATGA 1 cut(s) 370
PciI ACATGT 2 cut(s) 186, 270
PcsI WCGNNNNNNNCGW 2 cut(s) 290, 299
PdmI GAANNNNTTC 1 cut(s) 155
PscI ACATGT 2 cut(s) 186, 270
Psp124BI GAGCTC 1 cut(s) 184
Psp6I CCWGG 1 cut(s) 424
PspGI CCWGG 1 cut(s) 424
PstI CTGCAG 1 cut(s) 223
RseI CAYNNNNRTG 2 cut(s) 71, 372
SacI GAGCTC 1 cut(s) 184
Sau3AI GATC 2 cut(s) 317, 358
ScrFI CCNGG 1 cut(s) 426
SduI GDGCHC 2 cut(s) 116, 184
SetI ASST 4 cut(s) 138, 175, 184, 266
SfaNI GCATC 1 cut(s) 240
SfcI CTRYAG 1 cut(s) 219
SmiMI CAYNNNNRTG 2 cut(s) 71, 372
SmlI CTYRAG 1 cut(s) 69
SmoI CTYRAG 1 cut(s) 69
Sse9I AATT 2 cut(s) 83, 203
SstI GAGCTC 1 cut(s) 184
StyD4I CCNGG 1 cut(s) 424
StyI CCWWGG 1 cut(s) 334
TaqI TCGA 3 cut(s) 87, 226, 302
TasI AATT 2 cut(s) 83, 203
TspDTI ATGAA 2 cut(s) 288, 356
XapI RAATTY 2 cut(s) 83, 203
XceI RCATGY 2 cut(s) 190, 274
XmiI GTMKAC 1 cut(s) 311
XmnI GAANNNNTTC 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.