MD16G1195800.v1.1

Protein of unknown function (DUF1677)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0012208
Physical Location & Seq
Reverse (-)
17406386 .. 17406762
377 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1195800.v1.1.491

Sequence Viewer

Length: 357 bp
ATGGAGATTGAGATGGTGAGGTGTGAGTGTTGTGGACTAAAAGAGGATTGCACGCAAGACTACATCACACAAGTGAAGGCAAAGTTTGATGGGAAATGGCTGTGTGGGTTGTGCTCAGAAGCAGTGAGAGATGAGGTTGGCAAGGGCAGCAAGCAGCCATTTGGCATGGAGGAAGCTGTGAGGGCACACATGTCATTTTGTGGTAAATTTAAATCCAACCCTGCAGTGAGAGTGGCAGATGGGATGAGGCAGATGCTTAGGAGAAGGTCAGACATGTCATCTTCTTCTTCATCGCCAAAAAAGTACACAAGATCAGCAAGCACATCCCAAGTGGGCGATTCATCATCTTTCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1677

Protein Analysis

119

Amino Acids

13.07

Weight (kDa)

8.72

Isoelectric Point (pI)

72.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1677 PF07911 3 - 91 4.6e-38 Protein of unknown function (DUF1677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22540 AT4G14819
fragaria_vesca FvH4_4g16260
malus_domestica MD07G1114800.v1.1 MD13G1195100.v1.1 MD16G1195800.v1.1
prunus_persica Prupe.1G015800_v2.0.a1
pyrus_communis pycom13g16730 pycom16g16500
rosa_chinensis RchiOBHm_Chr4g0415821
rosa_laevigata RLG00000008037
rosa_multiflora Rmu_sc0002438.1_g000024
rosa_roxburghii Rroxscaffold_5G00359670
rosa_rugosa Rorug04G0137000
rosa_samantha Rh4AG198200 Rh4BG196200 Rh4CG209300 Rh4DG196000
rosa_wichuraiana Rw4G016810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 206
AfaI GTAC 1 cut(s) 305
AflIII ACRYGT 2 cut(s) 189, 273
AleI CACNNNNGTG 1 cut(s) 71
AluBI AGCT 1 cut(s) 176
AluI AGCT 1 cut(s) 176
Alw21I GWGCWC 1 cut(s) 116
ApeKI GCWGC 2 cut(s) 147, 154
ApoI RAATTY 1 cut(s) 206
AsuHPI GGTGA 1 cut(s) 28
BaeGI GKGCMC 1 cut(s) 187
Bbv12I GWGCWC 1 cut(s) 116
BbvI GCAGC 2 cut(s) 159, 166
BccI CCATC 3 cut(s) 7, 83, 233
BfmI CTRYAG 1 cut(s) 222
BisI GCNGC 2 cut(s) 148, 155
BlsI GCNGC 2 cut(s) 149, 156
BmsI GCATC 1 cut(s) 243
Bpu10I CCTNAGC 1 cut(s) 257
BseGI GGATG 2 cut(s) 249, 323
BseMII CTCAG 1 cut(s) 129
BseSI GKGCMC 1 cut(s) 187
BseXI GCAGC 2 cut(s) 159, 166
BsiHKAI GWGCWC 1 cut(s) 116
Bsp1286I GDGCHC 2 cut(s) 116, 187
Bsp143I GATC 1 cut(s) 311
BspCNI CTCAG 1 cut(s) 128
BspHI TCATGA 1 cut(s) 353
BspMAI CTGCAG 1 cut(s) 226
BssMI GATC 1 cut(s) 311
BstC8I GCNNGC 3 cut(s) 53, 152, 319
BstDEI CTNAG 2 cut(s) 115, 257
BstF5I GGATG 2 cut(s) 249, 323
BstKTI GATC 1 cut(s) 314
BstMBI GATC 1 cut(s) 311
BstMWI GCNNNNNNNGC 2 cut(s) 147, 182
BstNSI RCATGY 2 cut(s) 193, 277
BstSFI CTRYAG 1 cut(s) 222
BstSLI GKGCMC 1 cut(s) 187
BstV1I GCAGC 2 cut(s) 159, 166
BtgZI GCGATG 1 cut(s) 276
BtsCI GGATG 2 cut(s) 249, 323
BtsI GCAGTG 2 cut(s) 129, 231
BtsIMutI CAGTG 2 cut(s) 129, 231
Cac8I GCNNGC 3 cut(s) 53, 152, 319
CciI TCATGA 1 cut(s) 353
Csp6I GTAC 1 cut(s) 304
CviAII CATG 4 cut(s) 166, 190, 274, 354
CviJI RGCY 3 cut(s) 100, 157, 176
CviKI_1 RGCY 3 cut(s) 100, 157, 176
CviQI GTAC 1 cut(s) 304
DdeI CTNAG 2 cut(s) 115, 257
DpnI GATC 1 cut(s) 313
DpnII GATC 1 cut(s) 311
DraI TTTAAA 1 cut(s) 211
FaeI CATG 4 cut(s) 169, 193, 277, 357
FaiI YATR 4 cut(s) 167, 191, 275, 355
FatI CATG 4 cut(s) 165, 189, 273, 353
Fnu4HI GCNGC 2 cut(s) 148, 155
FokI GGATG 2 cut(s) 256, 310
Fsp4HI GCNGC 2 cut(s) 148, 155
GluI GCNGC 2 cut(s) 148, 155
Hin1II CATG 4 cut(s) 169, 193, 277, 357
HinfI GANTC 1 cut(s) 338
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 2 cut(s) 35, 306
Hpy188I TCNGA 2 cut(s) 118, 271
Hpy188III TCNNGA 1 cut(s) 354
Hpy8I GTNNAC 2 cut(s) 35, 306
HpyAV CCTTC 2 cut(s) 70, 258
HpyCH4V TGCA 2 cut(s) 51, 224
HpyF10VI GCNNNNNNNGC 2 cut(s) 147, 182
HpyF3I CTNAG 2 cut(s) 115, 257
Hsp92II CATG 4 cut(s) 169, 193, 277, 357
Kzo9I GATC 1 cut(s) 311
LpnPI CCDG 1 cut(s) 234
Lsp1109I GCAGC 2 cut(s) 159, 166
LweI GCATC 1 cut(s) 243
MalI GATC 1 cut(s) 313
MboI GATC 1 cut(s) 311
MboII GAAGA 3 cut(s) 273, 276, 279
MhlI GDGCHC 2 cut(s) 116, 187
MluCI AATT 1 cut(s) 206
MmeI TCCRAC 1 cut(s) 240
MnlI CCTC 6 cut(s) 12, 37, 127, 163, 174, 240
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 71
MwoI GCNNNNNNNGC 2 cut(s) 147, 182
NdeII GATC 1 cut(s) 311
NlaIII CATG 4 cut(s) 169, 193, 277, 357
NspI RCATGY 2 cut(s) 193, 277
OliI CACNNNNGTG 1 cut(s) 71
PagI TCATGA 1 cut(s) 353
PciI ACATGT 2 cut(s) 189, 273
PfeI GAWTC 1 cut(s) 338
PkrI GCNGC 2 cut(s) 149, 156
PscI ACATGT 2 cut(s) 189, 273
PstI CTGCAG 1 cut(s) 226
RsaI GTAC 1 cut(s) 305
RsaNI GTAC 1 cut(s) 304
RseI CAYNNNNRTG 1 cut(s) 71
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 2 cut(s) 148, 155
Sau3AI GATC 1 cut(s) 311
SduI GDGCHC 2 cut(s) 116, 187
SetI ASST 4 cut(s) 23, 138, 178, 269
SfaNI GCATC 1 cut(s) 243
SfcI CTRYAG 1 cut(s) 222
SmiI ATTTAAAT 1 cut(s) 211
SmiMI CAYNNNNRTG 1 cut(s) 71
Sse9I AATT 1 cut(s) 206
SwaI ATTTAAAT 1 cut(s) 211
TasI AATT 1 cut(s) 206
TatI WGTACW 1 cut(s) 303
TfiI GAWTC 1 cut(s) 338
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 2 cut(s) 129, 231
TseI GCWGC 2 cut(s) 147, 154
TspDTI ATGAA 2 cut(s) 279, 330
TspRI CASTG 2 cut(s) 129, 231
XapI RAATTY 1 cut(s) 206
XceI RCATGY 2 cut(s) 193, 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.