Rw4G016810

Protein of unknown function (DUF1677)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0012208
Physical Location & Seq
Forward (+)
38159933 .. 38161068
1136 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G016810.1

Sequence Viewer

Length: 378 bp
ATGGAGATTGAGATGGTCAAGTGCGAGTGTTGTGGACTAAAAGAGGATTGCACGCAAGACTACATCACTCAAGTGAAGGCGAAATTCGACGGCAAATGGCTCTGTGGGTTGTGCTCGGAAGCAGTAAGAGACGAGGTTAGCAAAGGCAAGAAGCCATTCAGCATGGAAGAAGCTGTGAGAGCTCACATGTCATTTTGTGGTAAATTCAAATCCAACCCTGCAGTTCGAGTTGCAGATGGGATGAGACAGATGCTTAGAAGAAGGTCAGACATGTCCTCATCATCGCCATCTTCGTCTTCTTCGTCTTCATCGAAGAAGTATACAAGATCATCAAGCACATCCCAAGTGGGTGATTCGTCTTCTTTCTCTTTGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1677

Protein Analysis

125

Amino Acids

13.83

Weight (kDa)

8.87

Isoelectric Point (pI)

77.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1677 PF07911 3 - 90 1e-38 Protein of unknown function (DUF1677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22540 AT4G14819
fragaria_vesca FvH4_4g16260
malus_domestica MD07G1114800.v1.1 MD13G1195100.v1.1 MD16G1195800.v1.1
prunus_persica Prupe.1G015800_v2.0.a1
pyrus_communis pycom13g16730 pycom16g16500
rosa_chinensis RchiOBHm_Chr4g0415821
rosa_laevigata RLG00000008037
rosa_multiflora Rmu_sc0002438.1_g000024
rosa_roxburghii Rroxscaffold_5G00359670
rosa_rugosa Rorug04G0137000
rosa_samantha Rh4AG198200 Rh4BG196200 Rh4CG209300 Rh4DG196000
rosa_wichuraiana Rw4G016810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 320
AcsI RAATTY 2 cut(s) 83, 203
AfaI GTAC 1 cut(s) 374
AflIII ACRYGT 2 cut(s) 186, 270
AgsI TTSAA 1 cut(s) 208
AleI CACNNNNGTG 1 cut(s) 71
AluBI AGCT 2 cut(s) 173, 182
AluI AGCT 2 cut(s) 173, 182
Alw21I GWGCWC 2 cut(s) 116, 184
Alw26I GTCTC 2 cut(s) 123, 238
ApoI RAATTY 2 cut(s) 83, 203
Asp700I GAANNNNTTC 1 cut(s) 155
AsuHPI GGTGA 1 cut(s) 362
BanII GRGCYC 1 cut(s) 184
BbsI GAAGAC 3 cut(s) 288, 297, 351
Bbv12I GWGCWC 2 cut(s) 116, 184
BccI CCATC 3 cut(s) 7, 230, 295
BceAI ACGGC 1 cut(s) 106
BcoDI GTCTC 2 cut(s) 123, 238
BfmI CTRYAG 1 cut(s) 219
BmsI GCATC 1 cut(s) 240
BpiI GAAGAC 3 cut(s) 288, 297, 351
BpuEI CTTGAG 1 cut(s) 54
BseGI GGATG 2 cut(s) 246, 338
BsiHKAI GWGCWC 2 cut(s) 116, 184
BsmAI GTCTC 2 cut(s) 123, 238
BsmBI CGTCTC 1 cut(s) 123
Bsp1286I GDGCHC 2 cut(s) 116, 184
Bsp143I GATC 1 cut(s) 326
BspMAI CTGCAG 1 cut(s) 223
BssMI GATC 1 cut(s) 326
BssNAI GTATAC 1 cut(s) 321
Bst1107I GTATAC 1 cut(s) 321
BstC8I GCNNGC 1 cut(s) 53
BstDEI CTNAG 1 cut(s) 254
BstF5I GGATG 2 cut(s) 246, 338
BstKTI GATC 1 cut(s) 329
BstMAI GTCTC 2 cut(s) 123, 238
BstMBI GATC 1 cut(s) 326
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstNSI RCATGY 2 cut(s) 190, 274
BstSFI CTRYAG 1 cut(s) 219
BstV2I GAAGAC 3 cut(s) 288, 297, 351
BstZ17I GTATAC 1 cut(s) 321
BtgZI GCGATG 1 cut(s) 267
BtsCI GGATG 2 cut(s) 246, 338
Cac8I GCNNGC 1 cut(s) 53
Csp6I GTAC 1 cut(s) 373
CviAII CATG 3 cut(s) 163, 187, 271
CviJI RGCY 4 cut(s) 100, 154, 173, 182
CviKI_1 RGCY 4 cut(s) 100, 154, 173, 182
CviQI GTAC 1 cut(s) 373
DdeI CTNAG 1 cut(s) 254
DpnI GATC 1 cut(s) 328
DpnII GATC 1 cut(s) 326
Ecl136II GAGCTC 1 cut(s) 182
Eco24I GRGCYC 1 cut(s) 184
Eco53kI GAGCTC 1 cut(s) 182
EcoICRI GAGCTC 1 cut(s) 182
EcoT38I GRGCYC 1 cut(s) 184
Esp3I CGTCTC 1 cut(s) 123
FaeI CATG 3 cut(s) 166, 190, 274
FaiI YATR 4 cut(s) 164, 188, 272, 321
FatI CATG 3 cut(s) 162, 186, 270
FblI GTMKAC 1 cut(s) 320
FokI GGATG 2 cut(s) 253, 325
FriOI GRGCYC 1 cut(s) 184
Hin1II CATG 3 cut(s) 166, 190, 274
HinfI GANTC 1 cut(s) 353
HphI GGTGA 1 cut(s) 362
Hpy166II GTNNAC 2 cut(s) 35, 321
Hpy188I TCNGA 2 cut(s) 118, 268
Hpy8I GTNNAC 2 cut(s) 35, 321
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 2 cut(s) 70, 255
HpyCH4V TGCA 3 cut(s) 51, 221, 233
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpyF3I CTNAG 1 cut(s) 254
Hsp92II CATG 3 cut(s) 166, 190, 274
Kzo9I GATC 1 cut(s) 326
LpnPI CCDG 1 cut(s) 231
LweI GCATC 1 cut(s) 240
MalI GATC 1 cut(s) 328
MboI GATC 1 cut(s) 326
MboII GAAGA 8 cut(s) 179, 270, 282, 288, 291, 297, 325, 351
MhlI GDGCHC 2 cut(s) 116, 184
MluCI AATT 2 cut(s) 83, 203
MmeI TCCRAC 1 cut(s) 237
MnlI CCTC 3 cut(s) 37, 127, 286
MroXI GAANNNNTTC 1 cut(s) 155
MslI CAYNNNNRTG 1 cut(s) 71
MwoI GCNNNNNNNGC 1 cut(s) 179
NdeII GATC 1 cut(s) 326
NlaIII CATG 3 cut(s) 166, 190, 274
NspI RCATGY 2 cut(s) 190, 274
OliI CACNNNNGTG 1 cut(s) 71
PciI ACATGT 2 cut(s) 186, 270
PcsI WCGNNNNNNNCGW 3 cut(s) 290, 299, 308
PdmI GAANNNNTTC 1 cut(s) 155
PfeI GAWTC 1 cut(s) 353
PscI ACATGT 2 cut(s) 186, 270
Psp124BI GAGCTC 1 cut(s) 184
PstI CTGCAG 1 cut(s) 223
RsaI GTAC 1 cut(s) 374
RsaNI GTAC 1 cut(s) 373
RseI CAYNNNNRTG 1 cut(s) 71
SacI GAGCTC 1 cut(s) 184
Sau3AI GATC 1 cut(s) 326
SduI GDGCHC 2 cut(s) 116, 184
SetI ASST 4 cut(s) 138, 175, 184, 266
SfaNI GCATC 1 cut(s) 240
SfcI CTRYAG 1 cut(s) 219
SmiMI CAYNNNNRTG 1 cut(s) 71
SmlI CTYRAG 1 cut(s) 69
SmoI CTYRAG 1 cut(s) 69
Sse9I AATT 2 cut(s) 83, 203
SstI GAGCTC 1 cut(s) 184
TaqI TCGA 3 cut(s) 87, 226, 311
TasI AATT 2 cut(s) 83, 203
TatI WGTACW 1 cut(s) 372
TfiI GAWTC 1 cut(s) 353
TspDTI ATGAA 1 cut(s) 297
XapI RAATTY 2 cut(s) 83, 203
XceI RCATGY 2 cut(s) 190, 274
XmiI GTMKAC 1 cut(s) 320
XmnI GAANNNNTTC 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.