pycom13g16730

Protein of unknown function (DUF1677)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0012208
Physical Location & Seq
Reverse (-)
12468844 .. 12469203
360 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g16730.1

Sequence Viewer

Length: 360 bp
ATGGAGATTGAGATGGTTAGGTGTGAGTGCTGTGGACTAAAAGAAGATTGCACACAAGACTACATCACACAAGTGAAGGCAAAATTTGATGGGAAATGGCTGTGTGGGTTGTGCTCAGAAGCAGTGAGGGATGAGGTTGGCAAAGGCAGCAATCAGCCATTTGGCATGGAGGAAGCTGTGAGGGCACACATGTCATTTTGTGGTAAATTCAAATCCAACCCTGCAGTTAGAGTGGCAGATGGGATGAGGCAGATACTTAGGAGAAGGTCAGACCTGTCATCTTCTTCTTCATCACCAAAAAGGTACACAAGATCAGCAAGCACCCAAGTGGGCGATTCATCTTCTTTCTCATTGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1677

Protein Analysis

120

Amino Acids

13.24

Weight (kDa)

8.5

Isoelectric Point (pI)

67.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1677 PF07911 3 - 91 7.2e-38 Protein of unknown function (DUF1677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22540 AT4G14819
fragaria_vesca FvH4_4g16260
malus_domestica MD07G1114800.v1.1 MD13G1195100.v1.1 MD16G1195800.v1.1
prunus_persica Prupe.1G015800_v2.0.a1
pyrus_communis pycom13g16730 pycom16g16500
rosa_chinensis RchiOBHm_Chr4g0415821
rosa_laevigata RLG00000008037
rosa_multiflora Rmu_sc0002438.1_g000024
rosa_roxburghii Rroxscaffold_5G00359670
rosa_rugosa Rorug04G0137000
rosa_samantha Rh4AG198200 Rh4BG196200 Rh4CG209300 Rh4DG196000
rosa_wichuraiana Rw4G016810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 83, 206
AfaI GTAC 2 cut(s) 305, 356
AflIII ACRYGT 1 cut(s) 189
AgsI TTSAA 1 cut(s) 211
AleI CACNNNNGTG 2 cut(s) 71, 326
AluBI AGCT 1 cut(s) 176
AluI AGCT 1 cut(s) 176
Alw21I GWGCWC 1 cut(s) 116
ApeKI GCWGC 1 cut(s) 147
ApoI RAATTY 2 cut(s) 83, 206
AsuHPI GGTGA 1 cut(s) 285
BaeGI GKGCMC 1 cut(s) 187
Bbv12I GWGCWC 1 cut(s) 116
BbvI GCAGC 1 cut(s) 159
BccI CCATC 3 cut(s) 7, 83, 233
BfmI CTRYAG 1 cut(s) 222
BisI GCNGC 1 cut(s) 148
BlsI GCNGC 1 cut(s) 149
BseGI GGATG 2 cut(s) 136, 249
BseMII CTCAG 1 cut(s) 129
BseSI GKGCMC 1 cut(s) 187
BseXI GCAGC 1 cut(s) 159
BsiHKAI GWGCWC 1 cut(s) 116
Bsp1286I GDGCHC 2 cut(s) 116, 187
Bsp143I GATC 1 cut(s) 311
BspCNI CTCAG 1 cut(s) 128
BspMAI CTGCAG 1 cut(s) 226
BssMI GATC 1 cut(s) 311
BstC8I GCNNGC 1 cut(s) 319
BstDEI CTNAG 2 cut(s) 115, 257
BstF5I GGATG 2 cut(s) 136, 249
BstKTI GATC 1 cut(s) 314
BstMBI GATC 1 cut(s) 311
BstMWI GCNNNNNNNGC 2 cut(s) 147, 182
BstNSI RCATGY 1 cut(s) 193
BstSFI CTRYAG 1 cut(s) 222
BstSLI GKGCMC 1 cut(s) 187
BstV1I GCAGC 1 cut(s) 159
BtsCI GGATG 2 cut(s) 136, 249
BtsI GCAGTG 1 cut(s) 129
BtsIMutI CAGTG 1 cut(s) 129
Cac8I GCNNGC 1 cut(s) 319
Csp6I GTAC 2 cut(s) 304, 355
CviAII CATG 2 cut(s) 166, 190
CviJI RGCY 3 cut(s) 100, 157, 176
CviKI_1 RGCY 3 cut(s) 100, 157, 176
CviQI GTAC 2 cut(s) 304, 355
DdeI CTNAG 2 cut(s) 115, 257
DpnI GATC 1 cut(s) 313
DpnII GATC 1 cut(s) 311
FaeI CATG 2 cut(s) 169, 193
FaiI YATR 2 cut(s) 167, 191
FatI CATG 2 cut(s) 165, 189
Fnu4HI GCNGC 1 cut(s) 148
FokI GGATG 2 cut(s) 143, 256
Fsp4HI GCNGC 1 cut(s) 148
GluI GCNGC 1 cut(s) 148
Hin1II CATG 2 cut(s) 169, 193
HinfI GANTC 1 cut(s) 335
HphI GGTGA 1 cut(s) 285
Hpy166II GTNNAC 2 cut(s) 35, 306
Hpy188I TCNGA 2 cut(s) 118, 271
Hpy8I GTNNAC 2 cut(s) 35, 306
HpyAV CCTTC 2 cut(s) 70, 258
HpyCH4V TGCA 2 cut(s) 51, 224
HpyF10VI GCNNNNNNNGC 2 cut(s) 147, 182
HpyF3I CTNAG 2 cut(s) 115, 257
Hsp92II CATG 2 cut(s) 169, 193
Kzo9I GATC 1 cut(s) 311
LpnPI CCDG 2 cut(s) 234, 287
Lsp1109I GCAGC 1 cut(s) 159
MalI GATC 1 cut(s) 313
MboI GATC 1 cut(s) 311
MboII GAAGA 5 cut(s) 56, 273, 276, 279, 333
MhlI GDGCHC 2 cut(s) 116, 187
MluCI AATT 2 cut(s) 83, 206
MmeI TCCRAC 1 cut(s) 240
MnlI CCTC 5 cut(s) 120, 127, 163, 174, 240
MslI CAYNNNNRTG 2 cut(s) 71, 326
MwoI GCNNNNNNNGC 2 cut(s) 147, 182
NdeII GATC 1 cut(s) 311
NlaIII CATG 2 cut(s) 169, 193
NspI RCATGY 1 cut(s) 193
OliI CACNNNNGTG 2 cut(s) 71, 326
PciI ACATGT 1 cut(s) 189
PfeI GAWTC 1 cut(s) 335
PkrI GCNGC 1 cut(s) 149
PscI ACATGT 1 cut(s) 189
PstI CTGCAG 1 cut(s) 226
RsaI GTAC 2 cut(s) 305, 356
RsaNI GTAC 2 cut(s) 304, 355
RseI CAYNNNNRTG 2 cut(s) 71, 326
SatI GCNGC 1 cut(s) 148
Sau3AI GATC 1 cut(s) 311
SduI GDGCHC 2 cut(s) 116, 187
SetI ASST 6 cut(s) 23, 138, 178, 269, 276, 305
SfcI CTRYAG 1 cut(s) 222
SgeI CNNG 9 cut(s) 68, 83, 178, 202, 233, 286, 321, 330, 338
SmiMI CAYNNNNRTG 2 cut(s) 71, 326
Sse9I AATT 2 cut(s) 83, 206
TasI AATT 2 cut(s) 83, 206
TatI WGTACW 1 cut(s) 354
TfiI GAWTC 1 cut(s) 335
TscAI CASTG 1 cut(s) 129
TseI GCWGC 1 cut(s) 147
TspDTI ATGAA 2 cut(s) 279, 327
TspRI CASTG 1 cut(s) 129
XapI RAATTY 2 cut(s) 83, 206
XceI RCATGY 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.