Rmu_sc0002438.1_g000024

Protein of unknown function (DUF1677)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002438.1
OG0012208
Physical Location & Seq
Reverse (-)
103092 .. 106547
3456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002438.1_g000024.1.cds

Sequence Viewer

Length: 906 bp
atggagattgagatggtcaagtgcgagtgttgtggactaaaagaggattgcacgcaagactacatcactcaagtgaaggcgaaattcgacggcaaatggctctgtgggttgtgctcggaagcagtaagagacgaggttagcaaaggcaagaagccattcggcatggaagaagctgtgagagctcacatgtcattttgtggtaaattcaaatccaaccctgcagttcgagttgcagatgggatgagacagatgcttagaagaaggtcagacatgtcctcatcatcgccatcttcgtcttcttcgtcttcatcgaagaagtatacaagatcatcaagcacatcccaagtgggggatgttttcctttattatgatccatttcatcatgatgggtatgatgttgctctgcttttcttggctacaaagacgaacaaaagtccaggctcttttcttttgatcgcaaaacagatcgattcattcgatccccaaaaccagcaaaacagacccaagctccaccgcaactcttcgctcttcgccctcccccaagccaccgcagaacagatcaattcattcgatccccaaaaccagcaaaacagacccagccaccgcagctcttccctcttcgccctcccccaagccaccgcagctcttcgctcttcgtactcccccaagccaccgcagctcttcggccttcgccttcccccaagccaccacagctccaccgcaggtcttcgctctccgccctcccccaagccaccgcagctcttcggccttcgccttcccccaagccaccacagctccaccgcaggtcttcgctctccgccctcccccaagccaccgcagctccaccgcgtctctgcctcagactccctctgctccgtgcctctgcctcgaaacgataagttctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1677

Protein Analysis

301

Amino Acids

33.19

Weight (kDa)

9.61

Isoelectric Point (pI)

81.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22540 AT4G14819
fragaria_vesca FvH4_4g16260
malus_domestica MD07G1114800.v1.1 MD13G1195100.v1.1 MD16G1195800.v1.1
prunus_persica Prupe.1G015800_v2.0.a1
pyrus_communis pycom13g16730 pycom16g16500
rosa_chinensis RchiOBHm_Chr4g0415821
rosa_laevigata RLG00000008037
rosa_multiflora Rmu_sc0002438.1_g000024
rosa_roxburghii Rroxscaffold_5G00359670
rosa_rugosa Rorug04G0137000
rosa_samantha Rh4AG198200 Rh4BG196200 Rh4CG209300 Rh4DG196000
rosa_wichuraiana Rw4G016810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 713, 794
AccI GTMKAC 1 cut(s) 320
AccII CGCG 1 cut(s) 849
AclWI GGATC 3 cut(s) 365, 473, 566
AcsI RAATTY 2 cut(s) 83, 203
AfaI GTAC 1 cut(s) 659
AfiI CCNNNNNNNGG 2 cut(s) 348, 349
AflIII ACRYGT 2 cut(s) 186, 270
AgsI TTSAA 1 cut(s) 208
AjnI CCWGG 1 cut(s) 436
AleI CACNNNNGTG 1 cut(s) 71
Alw21I GWGCWC 2 cut(s) 116, 184
Alw26I GTCTC 3 cut(s) 123, 238, 856
AlwI GGATC 3 cut(s) 365, 473, 566
AoxI GGCC 2 cut(s) 685, 766
ApeKI GCWGC 5 cut(s) 606, 641, 676, 757, 838
ApoI RAATTY 2 cut(s) 83, 203
Asp700I GAANNNNTTC 1 cut(s) 155
BanII GRGCYC 1 cut(s) 184
BbsI GAAGAC 4 cut(s) 288, 297, 719, 800
Bbv12I GWGCWC 2 cut(s) 116, 184
BbvI GCAGC 5 cut(s) 618, 653, 688, 769, 850
BccI CCATC 4 cut(s) 7, 230, 295, 380
BceAI ACGGC 1 cut(s) 106
BciT130I CCWGG 1 cut(s) 438
BcoDI GTCTC 3 cut(s) 123, 238, 856
BfmI CTRYAG 1 cut(s) 219
BfuAI ACCTGC 2 cut(s) 713, 794
BisI GCNGC 5 cut(s) 607, 642, 677, 758, 839
BlsI GCNGC 5 cut(s) 608, 643, 678, 759, 840
Bme1390I CCNGG 1 cut(s) 438
BmrFI CCNGG 1 cut(s) 438
BmsI GCATC 1 cut(s) 240
BpiI GAAGAC 4 cut(s) 288, 297, 719, 800
BpuEI CTTGAG 1 cut(s) 54
Bsa29I ATCGAT 1 cut(s) 468
BsaXI ACNNNNNCTCC 8 cut(s) 492, 522, 698, 728, 779, 809, 825, 855
Bsc4I CCNNNNNNNGG 2 cut(s) 348, 349
BseBI CCWGG 1 cut(s) 438
BseCI ATCGAT 1 cut(s) 468
BseGI GGATG 3 cut(s) 246, 338, 358
BseLI CCNNNNNNNGG 2 cut(s) 348, 349
BseMII CTCAG 1 cut(s) 873
BseXI GCAGC 5 cut(s) 618, 653, 688, 769, 850
BseYI CCCAGC 1 cut(s) 596
Bsh1236I CGCG 1 cut(s) 849
BshFI GGCC 2 cut(s) 687, 768
BshVI ATCGAT 1 cut(s) 468
BsiHKAI GWGCWC 2 cut(s) 116, 184
BslI CCNNNNNNNGG 2 cut(s) 348, 349
BsmAI GTCTC 3 cut(s) 123, 238, 856
BsmBI CGTCTC 2 cut(s) 123, 856
BsnI GGCC 2 cut(s) 687, 768
Bsp1286I GDGCHC 2 cut(s) 116, 184
Bsp143I GATC 7 cut(s) 326, 370, 453, 465, 478, 558, 571
BspANI GGCC 2 cut(s) 687, 768
BspCNI CTCAG 1 cut(s) 872
BspDI ATCGAT 1 cut(s) 468
BspFNI CGCG 1 cut(s) 849
BspHI TCATGA 1 cut(s) 382
BspMAI CTGCAG 1 cut(s) 223
BspMI ACCTGC 2 cut(s) 713, 794
BspPI GGATC 3 cut(s) 365, 473, 566
BspQI GCTCTTC 6 cut(s) 533, 616, 651, 658, 686, 767
BssMI GATC 7 cut(s) 326, 370, 453, 465, 478, 558, 571
BssNAI GTATAC 1 cut(s) 321
Bst1107I GTATAC 1 cut(s) 321
Bst2UI CCWGG 1 cut(s) 438
Bst6I CTCTTC 8 cut(s) 526, 533, 616, 623, 651, 658, 686, 767
BstC8I GCNNGC 1 cut(s) 53
BstDEI CTNAG 2 cut(s) 254, 859
BstF5I GGATG 3 cut(s) 246, 338, 358
BstFNI CGCG 1 cut(s) 849
BstKTI GATC 7 cut(s) 329, 373, 456, 468, 481, 561, 574
BstMAI GTCTC 3 cut(s) 123, 238, 856
BstMBI GATC 7 cut(s) 326, 370, 453, 465, 478, 558, 571
BstMWI GCNNNNNNNGC 8 cut(s) 179, 606, 641, 676, 711, 757, 792, 838
BstNI CCWGG 1 cut(s) 438
BstNSI RCATGY 2 cut(s) 190, 274
BstSCI CCNGG 1 cut(s) 436
BstSFI CTRYAG 1 cut(s) 219
BstUI CGCG 1 cut(s) 849
BstV1I GCAGC 5 cut(s) 618, 653, 688, 769, 850
BstV2I GAAGAC 4 cut(s) 288, 297, 719, 800
BstZ17I GTATAC 1 cut(s) 321
Bsu15I ATCGAT 1 cut(s) 468
BsuRI GGCC 2 cut(s) 687, 768
BsuTUI ATCGAT 1 cut(s) 468
BtgZI GCGATG 1 cut(s) 267
BtsCI GGATG 3 cut(s) 246, 338, 358
BveI ACCTGC 2 cut(s) 713, 794
Cac8I GCNNGC 1 cut(s) 53
CciI TCATGA 1 cut(s) 382
ClaI ATCGAT 1 cut(s) 468
CseI GACGC 1 cut(s) 838
Csp6I GTAC 1 cut(s) 658
CviAII CATG 4 cut(s) 163, 187, 271, 383
CviQI GTAC 1 cut(s) 658
DdeI CTNAG 2 cut(s) 254, 859
DpnI GATC 7 cut(s) 328, 372, 455, 467, 480, 560, 573
DpnII GATC 7 cut(s) 326, 370, 453, 465, 478, 558, 571
Eam1104I CTCTTC 8 cut(s) 526, 533, 616, 623, 651, 658, 686, 767
EarI CTCTTC 8 cut(s) 526, 533, 616, 623, 651, 658, 686, 767
EciI GGCGGA 2 cut(s) 726, 807
Ecl136II GAGCTC 1 cut(s) 182
Eco24I GRGCYC 1 cut(s) 184
Eco53kI GAGCTC 1 cut(s) 182
EcoICRI GAGCTC 1 cut(s) 182
EcoRII CCWGG 1 cut(s) 436
EcoT38I GRGCYC 1 cut(s) 184
Esp3I CGTCTC 2 cut(s) 123, 856
FaeI CATG 4 cut(s) 166, 190, 274, 386
FaiI YATR 7 cut(s) 164, 188, 272, 321, 369, 384, 393
FatI CATG 4 cut(s) 162, 186, 270, 382
FblI GTMKAC 1 cut(s) 320
Fnu4HI GCNGC 5 cut(s) 607, 642, 677, 758, 839
FokI GGATG 3 cut(s) 253, 325, 365
FriOI GRGCYC 1 cut(s) 184
Fsp4HI GCNGC 5 cut(s) 607, 642, 677, 758, 839
GluI GCNGC 5 cut(s) 607, 642, 677, 758, 839
GsaI CCCAGC 1 cut(s) 600
HaeIII GGCC 2 cut(s) 687, 768
HgaI GACGC 1 cut(s) 838
Hin1II CATG 4 cut(s) 166, 190, 274, 386
HinfI GANTC 2 cut(s) 470, 863
Hpy166II GTNNAC 2 cut(s) 35, 321
Hpy188I TCNGA 3 cut(s) 118, 268, 862
Hpy188III TCNNGA 1 cut(s) 383
Hpy8I GTNNAC 2 cut(s) 35, 321
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 6 cut(s) 70, 255, 698, 704, 779, 785
HpyCH4V TGCA 3 cut(s) 51, 221, 233
HpyF10VI GCNNNNNNNGC 8 cut(s) 179, 606, 641, 676, 711, 757, 792, 838
HpyF3I CTNAG 2 cut(s) 254, 859
Hsp92II CATG 4 cut(s) 166, 190, 274, 386
Kzo9I GATC 7 cut(s) 326, 370, 453, 465, 478, 558, 571
LguI GCTCTTC 6 cut(s) 533, 616, 651, 658, 686, 767
LmnI GCTCC 5 cut(s) 513, 719, 800, 846, 878
LpnPI CCDG 8 cut(s) 231, 423, 450, 503, 596, 610, 708, 789
Lsp1109I GCAGC 5 cut(s) 618, 653, 688, 769, 850
LweI GCATC 1 cut(s) 240
MalI GATC 7 cut(s) 328, 372, 455, 467, 480, 560, 573
MboI GATC 7 cut(s) 326, 370, 453, 465, 478, 558, 571
MhlI GDGCHC 2 cut(s) 116, 184
MluCI AATT 3 cut(s) 83, 203, 562
MlyI GAGTC 1 cut(s) 857
MmeI TCCRAC 1 cut(s) 237
MroXI GAANNNNTTC 1 cut(s) 155
MslI CAYNNNNRTG 2 cut(s) 71, 384
MspR9I CCNGG 1 cut(s) 438
MvaI CCWGG 1 cut(s) 438
MvnI CGCG 1 cut(s) 849
MwoI GCNNNNNNNGC 8 cut(s) 179, 606, 641, 676, 711, 757, 792, 838
NdeII GATC 7 cut(s) 326, 370, 453, 465, 478, 558, 571
NlaIII CATG 4 cut(s) 166, 190, 274, 386
NspI RCATGY 2 cut(s) 190, 274
OliI CACNNNNGTG 1 cut(s) 71
PagI TCATGA 1 cut(s) 382
PciI ACATGT 2 cut(s) 186, 270
PciSI GCTCTTC 6 cut(s) 533, 616, 651, 658, 686, 767
PcsI WCGNNNNNNNCGW 4 cut(s) 290, 299, 308, 474
PdmI GAANNNNTTC 1 cut(s) 155
PfeI GAWTC 1 cut(s) 470
PkrI GCNGC 5 cut(s) 608, 643, 678, 759, 840
PleI GAGTC 1 cut(s) 857
PpsI GAGTC 1 cut(s) 857
PscI ACATGT 2 cut(s) 186, 270
Psp124BI GAGCTC 1 cut(s) 184
Psp6I CCWGG 1 cut(s) 436
PspFI CCCAGC 1 cut(s) 596
PspGI CCWGG 1 cut(s) 436
PstI CTGCAG 1 cut(s) 223
RsaI GTAC 1 cut(s) 659
RsaNI GTAC 1 cut(s) 658
RseI CAYNNNNRTG 2 cut(s) 71, 384
SacI GAGCTC 1 cut(s) 184
SapI GCTCTTC 6 cut(s) 533, 616, 651, 658, 686, 767
SatI GCNGC 5 cut(s) 607, 642, 677, 758, 839
Sau3AI GATC 7 cut(s) 326, 370, 453, 465, 478, 558, 571
SchI GAGTC 1 cut(s) 857
ScrFI CCNGG 1 cut(s) 438
SduI GDGCHC 2 cut(s) 116, 184
SfaNI GCATC 1 cut(s) 240
SfcI CTRYAG 1 cut(s) 219
SmiMI CAYNNNNRTG 2 cut(s) 71, 384
SmlI CTYRAG 1 cut(s) 69
SmoI CTYRAG 1 cut(s) 69
Sse9I AATT 3 cut(s) 83, 203, 562
SstI GAGCTC 1 cut(s) 184
StyD4I CCNGG 1 cut(s) 436
TaqI TCGA 7 cut(s) 87, 226, 311, 468, 477, 570, 889
TasI AATT 3 cut(s) 83, 203, 562
TfiI GAWTC 1 cut(s) 470
TseI GCWGC 5 cut(s) 606, 641, 676, 757, 838
TspDTI ATGAA 4 cut(s) 297, 368, 462, 555
TspGWI ACGGA 1 cut(s) 865
XapI RAATTY 2 cut(s) 83, 203
XceI RCATGY 2 cut(s) 190, 274
XmiI GTMKAC 1 cut(s) 320
XmnI GAANNNNTTC 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.