RchiOBHm_Chr4g0415821

Protein of unknown function (DUF1677)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0012208
Physical Location & Seq
Forward (+)
40624806 .. 40625590
785 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38601

Sequence Viewer

Length: 348 bp
ATGGAGATTGAGATGGTCAAGTGCGAGTGTTGTGGACTAAAAGAGGATTGCACGCAAGACTACATCACTCAAGTGAAGGCGAAATTCGACGGCAAATGGCTCTGTGGGTTGTGCTCGGAAGCAGTAAGAGACGAGGTTAGCAAAGGCAAGAAGCCATTCGGCATGGAAGAAGCTGTGAGAGCTCACATGTCATTTTGTGGTAAATTCAAATCCAACCCTGCAGTTCAAGTTGCAGATGGGATGAGACAGATGCTTAGAAGAAGGTCAGACATGTCCTCATCATCGCCATCTTCGTCTTCATCGAAGAAGTATACAAGATCATCAAGCACATCCCAAGTGGCCGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1677

Protein Analysis

115

Amino Acids

12.7

Weight (kDa)

8.88

Isoelectric Point (pI)

73.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1677 PF07911 3 - 90 9.5e-39 Protein of unknown function (DUF1677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22540 AT4G14819
fragaria_vesca FvH4_4g16260
malus_domestica MD07G1114800.v1.1 MD13G1195100.v1.1 MD16G1195800.v1.1
prunus_persica Prupe.1G015800_v2.0.a1
pyrus_communis pycom13g16730 pycom16g16500
rosa_chinensis RchiOBHm_Chr4g0415821
rosa_laevigata RLG00000008037
rosa_multiflora Rmu_sc0002438.1_g000024
rosa_roxburghii Rroxscaffold_5G00359670
rosa_rugosa Rorug04G0137000
rosa_samantha Rh4AG198200 Rh4BG196200 Rh4CG209300 Rh4DG196000
rosa_wichuraiana Rw4G016810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 311
AcoI YGGCCR 1 cut(s) 339
AcsI RAATTY 2 cut(s) 83, 203
AflIII ACRYGT 2 cut(s) 186, 270
AgsI TTSAA 2 cut(s) 208, 227
AleI CACNNNNGTG 1 cut(s) 71
AluBI AGCT 2 cut(s) 173, 182
AluI AGCT 2 cut(s) 173, 182
Alw21I GWGCWC 2 cut(s) 116, 184
Alw26I GTCTC 2 cut(s) 123, 238
AoxI GGCC 1 cut(s) 339
ApoI RAATTY 2 cut(s) 83, 203
Asp700I GAANNNNTTC 1 cut(s) 155
AsuC2I CCSGG 1 cut(s) 343
BanII GRGCYC 1 cut(s) 184
BbsI GAAGAC 1 cut(s) 288
Bbv12I GWGCWC 2 cut(s) 116, 184
BccI CCATC 3 cut(s) 7, 230, 295
BceAI ACGGC 1 cut(s) 106
BcnI CCSGG 1 cut(s) 343
BcoDI GTCTC 2 cut(s) 123, 238
BfmI CTRYAG 1 cut(s) 219
Bme1390I CCNGG 1 cut(s) 343
BmrFI CCNGG 1 cut(s) 343
BmsI GCATC 1 cut(s) 240
BpiI GAAGAC 1 cut(s) 288
BpuEI CTTGAG 1 cut(s) 54
BpuMI CCSGG 1 cut(s) 343
BseGI GGATG 2 cut(s) 246, 329
BshFI GGCC 1 cut(s) 341
BsiHKAI GWGCWC 2 cut(s) 116, 184
BsiSI CCGG 1 cut(s) 342
BsmAI GTCTC 2 cut(s) 123, 238
BsmBI CGTCTC 1 cut(s) 123
BsnI GGCC 1 cut(s) 341
Bsp1286I GDGCHC 2 cut(s) 116, 184
Bsp143I GATC 1 cut(s) 317
BspANI GGCC 1 cut(s) 341
BspMAI CTGCAG 1 cut(s) 223
BssMI GATC 1 cut(s) 317
BssNAI GTATAC 1 cut(s) 312
Bst1107I GTATAC 1 cut(s) 312
BstC8I GCNNGC 1 cut(s) 53
BstDEI CTNAG 1 cut(s) 254
BstF5I GGATG 2 cut(s) 246, 329
BstKTI GATC 1 cut(s) 320
BstMAI GTCTC 2 cut(s) 123, 238
BstMBI GATC 1 cut(s) 317
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstNSI RCATGY 2 cut(s) 190, 274
BstSCI CCNGG 1 cut(s) 341
BstSFI CTRYAG 1 cut(s) 219
BstV2I GAAGAC 1 cut(s) 288
BstZ17I GTATAC 1 cut(s) 312
BsuRI GGCC 1 cut(s) 341
BtgZI GCGATG 1 cut(s) 267
BtsCI GGATG 2 cut(s) 246, 329
Cac8I GCNNGC 1 cut(s) 53
CviAII CATG 3 cut(s) 163, 187, 271
CviJI RGCY 5 cut(s) 100, 154, 173, 182, 341
CviKI_1 RGCY 5 cut(s) 100, 154, 173, 182, 341
DdeI CTNAG 1 cut(s) 254
DpnI GATC 1 cut(s) 319
DpnII GATC 1 cut(s) 317
EaeI YGGCCR 1 cut(s) 339
Ecl136II GAGCTC 1 cut(s) 182
Eco24I GRGCYC 1 cut(s) 184
Eco53kI GAGCTC 1 cut(s) 182
EcoICRI GAGCTC 1 cut(s) 182
EcoT38I GRGCYC 1 cut(s) 184
Esp3I CGTCTC 1 cut(s) 123
FaeI CATG 3 cut(s) 166, 190, 274
FaiI YATR 4 cut(s) 164, 188, 272, 312
FatI CATG 3 cut(s) 162, 186, 270
FblI GTMKAC 1 cut(s) 311
FokI GGATG 2 cut(s) 253, 316
FriOI GRGCYC 1 cut(s) 184
HaeIII GGCC 1 cut(s) 341
HapII CCGG 1 cut(s) 342
Hin1II CATG 3 cut(s) 166, 190, 274
HpaII CCGG 1 cut(s) 342
Hpy166II GTNNAC 2 cut(s) 35, 312
Hpy188I TCNGA 2 cut(s) 118, 268
Hpy8I GTNNAC 2 cut(s) 35, 312
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 2 cut(s) 70, 255
HpyCH4V TGCA 3 cut(s) 51, 221, 233
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpyF3I CTNAG 1 cut(s) 254
Hsp92II CATG 3 cut(s) 166, 190, 274
Kzo9I GATC 1 cut(s) 317
LpnPI CCDG 1 cut(s) 231
LweI GCATC 1 cut(s) 240
MalI GATC 1 cut(s) 319
MboI GATC 1 cut(s) 317
MboII GAAGA 5 cut(s) 179, 270, 282, 288, 316
MhlI GDGCHC 2 cut(s) 116, 184
MluCI AATT 2 cut(s) 83, 203
MmeI TCCRAC 1 cut(s) 237
MnlI CCTC 3 cut(s) 37, 127, 286
MroXI GAANNNNTTC 1 cut(s) 155
MslI CAYNNNNRTG 1 cut(s) 71
MspI CCGG 1 cut(s) 342
MspR9I CCNGG 1 cut(s) 343
MwoI GCNNNNNNNGC 1 cut(s) 179
NciI CCSGG 1 cut(s) 343
NdeII GATC 1 cut(s) 317
NlaIII CATG 3 cut(s) 166, 190, 274
NspI RCATGY 2 cut(s) 190, 274
OliI CACNNNNGTG 1 cut(s) 71
PciI ACATGT 2 cut(s) 186, 270
PcsI WCGNNNNNNNCGW 2 cut(s) 290, 299
PdmI GAANNNNTTC 1 cut(s) 155
PscI ACATGT 2 cut(s) 186, 270
Psp124BI GAGCTC 1 cut(s) 184
PstI CTGCAG 1 cut(s) 223
RseI CAYNNNNRTG 1 cut(s) 71
SacI GAGCTC 1 cut(s) 184
Sau3AI GATC 1 cut(s) 317
ScrFI CCNGG 1 cut(s) 343
SduI GDGCHC 2 cut(s) 116, 184
SetI ASST 4 cut(s) 138, 175, 184, 266
SfaNI GCATC 1 cut(s) 240
SfcI CTRYAG 1 cut(s) 219
SmiMI CAYNNNNRTG 1 cut(s) 71
SmlI CTYRAG 1 cut(s) 69
SmoI CTYRAG 1 cut(s) 69
Sse9I AATT 2 cut(s) 83, 203
SstI GAGCTC 1 cut(s) 184
StyD4I CCNGG 1 cut(s) 341
TaqI TCGA 2 cut(s) 87, 302
TasI AATT 2 cut(s) 83, 203
TspDTI ATGAA 1 cut(s) 288
XapI RAATTY 2 cut(s) 83, 203
XceI RCATGY 2 cut(s) 190, 274
XmiI GTMKAC 1 cut(s) 311
XmnI GAANNNNTTC 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.