MD07G1114800.v1.1

Protein of unknown function (DUF1677)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0012208
Physical Location & Seq
Reverse (-)
13816016 .. 13816213
198 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1114800.v1.1.491

Sequence Viewer

Length: 198 bp
ATGGAGGAAGCTGTGAGGGCACACATGTCATTTTGTGGTAAATTCAAATCCAACCCTGCAGTTAGAGTGGCAGATGGGATGAGGCAGATGCTTAGGAGAAGGTCAAACATGTCATCTTCTTCTTCATCACCAAAAAAGTACACAAGATCAGCAAGCACATCCCAAGTGGGCCATTCATCTTCTTTCTCATTGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1677

Protein Analysis

66

Amino Acids

7.22

Weight (kDa)

10.97

Isoelectric Point (pI)

87.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1677 PF07911 1 - 36 1.9e-08 Protein of unknown function (DUF1677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22540 AT4G14819
fragaria_vesca FvH4_4g16260
malus_domestica MD07G1114800.v1.1 MD13G1195100.v1.1 MD16G1195800.v1.1
prunus_persica Prupe.1G015800_v2.0.a1
pyrus_communis pycom13g16730 pycom16g16500
rosa_chinensis RchiOBHm_Chr4g0415821
rosa_laevigata RLG00000008037
rosa_multiflora Rmu_sc0002438.1_g000024
rosa_roxburghii Rroxscaffold_5G00359670
rosa_rugosa Rorug04G0137000
rosa_samantha Rh4AG198200 Rh4BG196200 Rh4CG209300 Rh4DG196000
rosa_wichuraiana Rw4G016810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 41
AfaI GTAC 2 cut(s) 140, 194
AflIII ACRYGT 2 cut(s) 24, 108
AgsI TTSAA 1 cut(s) 46
AluBI AGCT 1 cut(s) 11
AluI AGCT 1 cut(s) 11
AoxI GGCC 1 cut(s) 169
ApoI RAATTY 1 cut(s) 41
AspS9I GGNCC 1 cut(s) 169
AsuHPI GGTGA 1 cut(s) 120
BaeGI GKGCMC 1 cut(s) 22
BccI CCATC 1 cut(s) 68
BfmI CTRYAG 1 cut(s) 57
BmgT120I GGNCC 1 cut(s) 169
BmsI GCATC 1 cut(s) 78
Bpu10I CCTNAGC 1 cut(s) 92
BseGI GGATG 2 cut(s) 84, 158
BseSI GKGCMC 1 cut(s) 22
BshFI GGCC 1 cut(s) 171
BsnI GGCC 1 cut(s) 171
Bsp1286I GDGCHC 1 cut(s) 22
Bsp143I GATC 1 cut(s) 146
BspANI GGCC 1 cut(s) 171
BspMAI CTGCAG 1 cut(s) 61
BssMI GATC 1 cut(s) 146
BstC8I GCNNGC 1 cut(s) 154
BstDEI CTNAG 1 cut(s) 92
BstF5I GGATG 2 cut(s) 84, 158
BstKTI GATC 1 cut(s) 149
BstMBI GATC 1 cut(s) 146
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstNSI RCATGY 2 cut(s) 28, 112
BstSFI CTRYAG 1 cut(s) 57
BstSLI GKGCMC 1 cut(s) 22
BsuRI GGCC 1 cut(s) 171
BtsCI GGATG 2 cut(s) 84, 158
Cac8I GCNNGC 1 cut(s) 154
Cfr13I GGNCC 1 cut(s) 169
Csp6I GTAC 2 cut(s) 139, 193
CviAII CATG 2 cut(s) 25, 109
CviJI RGCY 2 cut(s) 11, 171
CviKI_1 RGCY 2 cut(s) 11, 171
CviQI GTAC 2 cut(s) 139, 193
DdeI CTNAG 1 cut(s) 92
DpnI GATC 1 cut(s) 148
DpnII GATC 1 cut(s) 146
FaeI CATG 2 cut(s) 28, 112
FaiI YATR 2 cut(s) 26, 110
FatI CATG 2 cut(s) 24, 108
FokI GGATG 2 cut(s) 91, 145
HaeIII GGCC 1 cut(s) 171
Hin1II CATG 2 cut(s) 28, 112
HphI GGTGA 1 cut(s) 120
Hpy166II GTNNAC 1 cut(s) 141
Hpy8I GTNNAC 1 cut(s) 141
HpyAV CCTTC 1 cut(s) 93
HpyCH4V TGCA 1 cut(s) 59
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpyF3I CTNAG 1 cut(s) 92
Hsp92II CATG 2 cut(s) 28, 112
Kzo9I GATC 1 cut(s) 146
LpnPI CCDG 1 cut(s) 69
LweI GCATC 1 cut(s) 78
MalI GATC 1 cut(s) 148
MboI GATC 1 cut(s) 146
MboII GAAGA 4 cut(s) 108, 111, 114, 171
MhlI GDGCHC 1 cut(s) 22
MluCI AATT 1 cut(s) 41
MmeI TCCRAC 1 cut(s) 75
MnlI CCTC 2 cut(s) 9, 75
MwoI GCNNNNNNNGC 1 cut(s) 17
NdeII GATC 1 cut(s) 146
NlaIII CATG 2 cut(s) 28, 112
NspI RCATGY 2 cut(s) 28, 112
PciI ACATGT 2 cut(s) 24, 108
PscI ACATGT 2 cut(s) 24, 108
PspPI GGNCC 1 cut(s) 169
PstI CTGCAG 1 cut(s) 61
RsaI GTAC 2 cut(s) 140, 194
RsaNI GTAC 2 cut(s) 139, 193
Sau3AI GATC 1 cut(s) 146
Sau96I GGNCC 1 cut(s) 169
SduI GDGCHC 1 cut(s) 22
SetI ASST 2 cut(s) 13, 104
SfaNI GCATC 1 cut(s) 78
SfcI CTRYAG 1 cut(s) 57
SgeI CNNG 6 cut(s) 37, 68, 121, 156, 165, 176
Sse9I AATT 1 cut(s) 41
TasI AATT 1 cut(s) 41
TatI WGTACW 2 cut(s) 138, 192
TspDTI ATGAA 2 cut(s) 114, 165
XapI RAATTY 1 cut(s) 41
XceI RCATGY 2 cut(s) 28, 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.