AT4G14819

Protein of unknown function (DUF1677)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012208
Physical Location & Seq
Forward (+)
8507263 .. 8507789
527 bp
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UTR
Exon/CDS
Intron
AT4G14819.1

Sequence Viewer

Length: 315 bp
ATGGAGATTGAATCGGTGACGTGCGAGTGTTGCGGCTTAATGGAAGATTGTACACAACACTACATTAGTAAAGTCAAAGCTAACTTCGCCGGGAAATGGCTTTGTGGGCTTTGCTCCGAGGCGGTAAGCGACGAATTCAGCCGTAGTTCGAAGACGGTGGAGGAAGCTGTTAATGCACACATGTCGTTTTGTGGCAAGTTTAACGCTAACCCCGCAGAACTCGTCGCCGACGGCATGAGACAGATGCTACGAAGGAGGTCCGGTGAGTTATCACCGAAGATGTCCAAGAAGTTCGGAAGATCTAACACCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1677

Protein Analysis

104

Amino Acids

11.53

Weight (kDa)

7.56

Isoelectric Point (pI)

76.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1677 PF07911 3 - 88 2.2e-37 Protein of unknown function (DUF1677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22540 AT4G14819
fragaria_vesca FvH4_4g16260
malus_domestica MD07G1114800.v1.1 MD13G1195100.v1.1 MD16G1195800.v1.1
prunus_persica Prupe.1G015800_v2.0.a1
pyrus_communis pycom13g16730 pycom16g16500
rosa_chinensis RchiOBHm_Chr4g0415821
rosa_laevigata RLG00000008037
rosa_multiflora Rmu_sc0002438.1_g000024
rosa_roxburghii Rroxscaffold_5G00359670
rosa_rugosa Rorug04G0137000
rosa_samantha Rh4AG198200 Rh4BG196200 Rh4CG209300 Rh4DG196000
rosa_wichuraiana Rw4G016810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 33, 122, 213
AcsI RAATTY 1 cut(s) 134
AfaI GTAC 1 cut(s) 52
AfiI CCNNNNNNNGG 1 cut(s) 96
AflIII ACRYGT 1 cut(s) 180
AgsI TTSAA 1 cut(s) 11
AjiI CACGTC 1 cut(s) 21
AluBI AGCT 2 cut(s) 80, 167
AluI AGCT 2 cut(s) 80, 167
Alw26I GTCTC 1 cut(s) 232
ApoI RAATTY 1 cut(s) 134
AspS9I GGNCC 1 cut(s) 258
AsuC2I CCSGG 1 cut(s) 91
AsuHPI GGTGA 3 cut(s) 28, 264, 275
AsuII TTCGAA 1 cut(s) 149
AvaII GGWCC 1 cut(s) 258
BbsI GAAGAC 1 cut(s) 158
BceAI ACGGC 2 cut(s) 126, 247
BcgI CGANNNNNNTGC 2 cut(s) 165, 199
BcnI CCSGG 1 cut(s) 91
BcoDI GTCTC 1 cut(s) 232
BglII AGATCT 1 cut(s) 299
BisI GCNGC 1 cut(s) 34
BlsI GCNGC 1 cut(s) 35
Bme1390I CCNGG 1 cut(s) 91
Bme18I GGWCC 1 cut(s) 258
BmgBI CACGTC 1 cut(s) 21
BmgT120I GGNCC 1 cut(s) 258
BmrFI CCNGG 1 cut(s) 91
BmsI GCATC 1 cut(s) 234
BpiI GAAGAC 1 cut(s) 158
Bpu14I TTCGAA 1 cut(s) 149
BpuMI CCSGG 1 cut(s) 91
BsaJI CCNNGG 1 cut(s) 117
BsaWI WCCGGW 1 cut(s) 260
BsaXI ACNNNNNCTCC 2 cut(s) 247, 277
Bsc4I CCNNNNNNNGG 1 cut(s) 96
BseDI CCNNGG 1 cut(s) 117
BseLI CCNNNNNNNGG 1 cut(s) 96
BsiSI CCGG 2 cut(s) 90, 261
BslI CCNNNNNNNGG 1 cut(s) 96
BsmAI GTCTC 1 cut(s) 232
Bsp119I TTCGAA 1 cut(s) 149
Bsp1407I TGTACA 1 cut(s) 50
Bsp143I GATC 1 cut(s) 299
BspACI CCGC 3 cut(s) 33, 122, 213
BspT104I TTCGAA 1 cut(s) 149
BsrGI TGTACA 1 cut(s) 50
BssECI CCNNGG 1 cut(s) 117
BssMI GATC 1 cut(s) 299
Bst4CI ACNGT 1 cut(s) 157
BstAUI TGTACA 1 cut(s) 50
BstBI TTCGAA 1 cut(s) 149
BstKTI GATC 1 cut(s) 302
BstMAI GTCTC 1 cut(s) 232
BstMBI GATC 1 cut(s) 299
BstMWI GCNNNNNNNGC 5 cut(s) 30, 86, 106, 173, 212
BstNSI RCATGY 1 cut(s) 184
BstSCI CCNGG 1 cut(s) 89
BstV2I GAAGAC 1 cut(s) 158
BstX2I RGATCY 1 cut(s) 299
BstYI RGATCY 1 cut(s) 299
BtrI CACGTC 1 cut(s) 21
Cfr13I GGNCC 1 cut(s) 258
Csp6I GTAC 1 cut(s) 51
CviAII CATG 2 cut(s) 181, 235
CviJI RGCY 6 cut(s) 36, 80, 100, 109, 141, 167
CviKI_1 RGCY 6 cut(s) 36, 80, 100, 109, 141, 167
CviQI GTAC 1 cut(s) 51
DpnI GATC 1 cut(s) 301
DpnII GATC 1 cut(s) 299
Eco47I GGWCC 1 cut(s) 258
EcoRI GAATTC 1 cut(s) 134
FaeI CATG 2 cut(s) 184, 238
FaiI YATR 3 cut(s) 182, 236, 313
FatI CATG 2 cut(s) 180, 234
FauI CCCGC 1 cut(s) 220
Fnu4HI GCNGC 1 cut(s) 34
Fsp4HI GCNGC 1 cut(s) 34
GluI GCNGC 1 cut(s) 34
HapII CCGG 2 cut(s) 90, 261
Hin1II CATG 2 cut(s) 184, 238
HinfI GANTC 1 cut(s) 11
HpaII CCGG 2 cut(s) 90, 261
HphI GGTGA 3 cut(s) 28, 264, 275
Hpy166II GTNNAC 1 cut(s) 53
Hpy188I TCNGA 2 cut(s) 118, 296
Hpy8I GTNNAC 1 cut(s) 53
Hpy99I CGWCG 3 cut(s) 134, 227, 233
HpyAV CCTTC 1 cut(s) 246
HpyCH4III ACNGT 1 cut(s) 157
HpyCH4IV ACGT 1 cut(s) 20
HpyCH4V TGCA 1 cut(s) 176
HpyF10VI GCNNNNNNNGC 5 cut(s) 30, 86, 106, 173, 212
HpySE526I ACGT 1 cut(s) 20
Hsp92II CATG 2 cut(s) 184, 238
Kzo9I GATC 1 cut(s) 299
LmnI GCTCC 1 cut(s) 119
LpnPI CCDG 2 cut(s) 103, 274
LweI GCATC 1 cut(s) 234
MaeII ACGT 1 cut(s) 20
MaeIII GTNAC 1 cut(s) 16
MalI GATC 1 cut(s) 301
MboI GATC 1 cut(s) 299
MboII GAAGA 4 cut(s) 56, 163, 289, 309
MflI RGATCY 1 cut(s) 299
MluCI AATT 1 cut(s) 134
MnlI CCTC 3 cut(s) 112, 154, 249
MseI TTAA 3 cut(s) 38, 171, 201
MspI CCGG 2 cut(s) 90, 261
MspR9I CCNGG 1 cut(s) 91
MwoI GCNNNNNNNGC 5 cut(s) 30, 86, 106, 173, 212
NciI CCSGG 1 cut(s) 91
NdeII GATC 1 cut(s) 299
NlaIII CATG 2 cut(s) 184, 238
NmuCI GTSAC 1 cut(s) 16
NspI RCATGY 1 cut(s) 184
NspV TTCGAA 1 cut(s) 149
PciI ACATGT 1 cut(s) 180
PfeI GAWTC 1 cut(s) 11
PkrI GCNGC 1 cut(s) 35
PscI ACATGT 1 cut(s) 180
PspPI GGNCC 1 cut(s) 258
PsuI RGATCY 1 cut(s) 299
RsaI GTAC 1 cut(s) 52
RsaNI GTAC 1 cut(s) 51
SaqAI TTAA 3 cut(s) 38, 171, 201
SatI GCNGC 1 cut(s) 34
Sau3AI GATC 1 cut(s) 299
Sau96I GGNCC 1 cut(s) 258
ScrFI CCNGG 1 cut(s) 91
SetI ASST 4 cut(s) 23, 82, 169, 260
SfaNI GCATC 1 cut(s) 234
SfuI TTCGAA 1 cut(s) 149
SinI GGWCC 1 cut(s) 258
Sse9I AATT 1 cut(s) 134
SsiI CCGC 3 cut(s) 33, 122, 213
StyD4I CCNGG 1 cut(s) 89
TaaI ACNGT 1 cut(s) 157
TaiI ACGT 1 cut(s) 23
TaqI TCGA 1 cut(s) 149
TasI AATT 1 cut(s) 134
TatI WGTACW 1 cut(s) 50
TauI GCSGC 1 cut(s) 36
TfiI GAWTC 1 cut(s) 11
Tru1I TTAA 3 cut(s) 38, 171, 201
Tru9I TTAA 3 cut(s) 38, 171, 201
TseFI GTSAC 1 cut(s) 16
Tsp45I GTSAC 1 cut(s) 16
VpaK11BI GGWCC 1 cut(s) 258
XapI RAATTY 1 cut(s) 134
XceI RCATGY 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.