Rroxscaffold_5G00359670

Protein of unknown function (DUF1677)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0012208
Physical Location & Seq
Forward (+)
39841487 .. 39842036
550 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00359670.1

Sequence Viewer

Length: 441 bp
ATGGAGATTGAGATGGTCAAGTGCGAGTGTTGTGGACTAAAAGAGGATTGCACGCAAGACTACATCACTCAAGTGAAGGTGAAATTCGACGGCAAATGGCTCTGTGGGTTGTGCTCGGAAGCAGTAAGAGACGAGGTTAGCAAAGGCAAGAAGCCATTCGGCATGGAAGAAGCTGTGAGAGCTCACATGTCATTTTGTGGTAAATTCAAATCCAACCCTGCAGTTCGAGTTGCAGATGGGATGAGGCAGATGCTTAGAAGAAGGTCAGACATGTCCTCATCATCGCCATCTTCGTCTTCTTCGTCTTCATCGAAGAAGTATACAAGATCATCAAGCACATCCCAAGGGATGTTTTTCCTTTATTATGATCCATTTCATCATGATGGGTATGATGTTGATCTGCTTTTCTTGGCTACAAAGACAAACAAAAGTCCAGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1677

Protein Analysis

146

Amino Acids

16.38

Weight (kDa)

8.66

Isoelectric Point (pI)

71.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1677 PF07911 3 - 90 5.7e-38 Protein of unknown function (DUF1677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22540 AT4G14819
fragaria_vesca FvH4_4g16260
malus_domestica MD07G1114800.v1.1 MD13G1195100.v1.1 MD16G1195800.v1.1
prunus_persica Prupe.1G015800_v2.0.a1
pyrus_communis pycom13g16730 pycom16g16500
rosa_chinensis RchiOBHm_Chr4g0415821
rosa_laevigata RLG00000008037
rosa_multiflora Rmu_sc0002438.1_g000024
rosa_roxburghii Rroxscaffold_5G00359670
rosa_rugosa Rorug04G0137000
rosa_samantha Rh4AG198200 Rh4BG196200 Rh4CG209300 Rh4DG196000
rosa_wichuraiana Rw4G016810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 320
AclWI GGATC 1 cut(s) 362
AcsI RAATTY 2 cut(s) 83, 203
AflIII ACRYGT 2 cut(s) 186, 270
AgsI TTSAA 1 cut(s) 208
AjnI CCWGG 1 cut(s) 433
AleI CACNNNNGTG 1 cut(s) 71
AluBI AGCT 2 cut(s) 173, 182
AluI AGCT 2 cut(s) 173, 182
Alw21I GWGCWC 2 cut(s) 116, 184
Alw26I GTCTC 1 cut(s) 123
AlwI GGATC 1 cut(s) 362
ApoI RAATTY 2 cut(s) 83, 203
Asp700I GAANNNNTTC 1 cut(s) 155
AsuHPI GGTGA 1 cut(s) 91
BanII GRGCYC 1 cut(s) 184
BbsI GAAGAC 2 cut(s) 288, 297
Bbv12I GWGCWC 2 cut(s) 116, 184
BccI CCATC 4 cut(s) 7, 230, 295, 377
BceAI ACGGC 1 cut(s) 106
BciT130I CCWGG 1 cut(s) 435
BcoDI GTCTC 1 cut(s) 123
BfmI CTRYAG 1 cut(s) 219
Bme1390I CCNGG 1 cut(s) 435
BmrFI CCNGG 1 cut(s) 435
BmsI GCATC 1 cut(s) 240
BpiI GAAGAC 2 cut(s) 288, 297
BpuEI CTTGAG 1 cut(s) 54
BsaBI GATNNNNATC 1 cut(s) 396
BsaJI CCNNGG 2 cut(s) 343, 434
Bse8I GATNNNNATC 1 cut(s) 396
BseBI CCWGG 1 cut(s) 435
BseDI CCNNGG 2 cut(s) 343, 434
BseGI GGATG 3 cut(s) 246, 338, 354
BseJI GATNNNNATC 1 cut(s) 396
BsiHKAI GWGCWC 2 cut(s) 116, 184
BsmAI GTCTC 1 cut(s) 123
BsmBI CGTCTC 1 cut(s) 123
Bsp1286I GDGCHC 2 cut(s) 116, 184
Bsp143I GATC 3 cut(s) 326, 367, 397
BspHI TCATGA 1 cut(s) 379
BspMAI CTGCAG 1 cut(s) 223
BspPI GGATC 1 cut(s) 362
BssECI CCNNGG 2 cut(s) 343, 434
BssMI GATC 3 cut(s) 326, 367, 397
BssNAI GTATAC 1 cut(s) 321
BssT1I CCWWGG 1 cut(s) 343
Bst1107I GTATAC 1 cut(s) 321
Bst2UI CCWGG 1 cut(s) 435
BstC8I GCNNGC 1 cut(s) 53
BstDEI CTNAG 1 cut(s) 254
BstF5I GGATG 3 cut(s) 246, 338, 354
BstKTI GATC 3 cut(s) 329, 370, 400
BstMAI GTCTC 1 cut(s) 123
BstMBI GATC 3 cut(s) 326, 367, 397
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstNI CCWGG 1 cut(s) 435
BstNSI RCATGY 2 cut(s) 190, 274
BstSCI CCNGG 1 cut(s) 433
BstSFI CTRYAG 1 cut(s) 219
BstV2I GAAGAC 2 cut(s) 288, 297
BstZ17I GTATAC 1 cut(s) 321
BtgZI GCGATG 1 cut(s) 267
BtsCI GGATG 3 cut(s) 246, 338, 354
Cac8I GCNNGC 1 cut(s) 53
CciI TCATGA 1 cut(s) 379
CviAII CATG 4 cut(s) 163, 187, 271, 380
CviJI RGCY 5 cut(s) 100, 154, 173, 182, 413
CviKI_1 RGCY 5 cut(s) 100, 154, 173, 182, 413
DdeI CTNAG 1 cut(s) 254
DpnI GATC 3 cut(s) 328, 369, 399
DpnII GATC 3 cut(s) 326, 367, 397
Ecl136II GAGCTC 1 cut(s) 182
Eco130I CCWWGG 1 cut(s) 343
Eco24I GRGCYC 1 cut(s) 184
Eco53kI GAGCTC 1 cut(s) 182
EcoICRI GAGCTC 1 cut(s) 182
EcoRII CCWGG 1 cut(s) 433
EcoT14I CCWWGG 1 cut(s) 343
EcoT38I GRGCYC 1 cut(s) 184
ErhI CCWWGG 1 cut(s) 343
Esp3I CGTCTC 1 cut(s) 123
FaeI CATG 4 cut(s) 166, 190, 274, 383
FaiI YATR 7 cut(s) 164, 188, 272, 321, 366, 381, 390
FatI CATG 4 cut(s) 162, 186, 270, 379
FblI GTMKAC 1 cut(s) 320
FokI GGATG 3 cut(s) 253, 325, 361
FriOI GRGCYC 1 cut(s) 184
Hin1II CATG 4 cut(s) 166, 190, 274, 383
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 2 cut(s) 35, 321
Hpy188I TCNGA 2 cut(s) 118, 268
Hpy188III TCNNGA 1 cut(s) 380
Hpy8I GTNNAC 2 cut(s) 35, 321
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 2 cut(s) 70, 255
HpyCH4V TGCA 3 cut(s) 51, 221, 233
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpyF3I CTNAG 1 cut(s) 254
Hsp92II CATG 4 cut(s) 166, 190, 274, 383
Kzo9I GATC 3 cut(s) 326, 367, 397
LpnPI CCDG 2 cut(s) 231, 420
LweI GCATC 1 cut(s) 240
MalI GATC 3 cut(s) 328, 369, 399
MboI GATC 3 cut(s) 326, 367, 397
MboII GAAGA 7 cut(s) 179, 270, 282, 288, 291, 297, 325
MhlI GDGCHC 2 cut(s) 116, 184
MluCI AATT 2 cut(s) 83, 203
MmeI TCCRAC 1 cut(s) 237
MnlI CCTC 4 cut(s) 37, 127, 237, 286
MroXI GAANNNNTTC 1 cut(s) 155
MslI CAYNNNNRTG 2 cut(s) 71, 381
MspR9I CCNGG 1 cut(s) 435
MvaI CCWGG 1 cut(s) 435
MwoI GCNNNNNNNGC 1 cut(s) 179
NdeII GATC 3 cut(s) 326, 367, 397
NlaIII CATG 4 cut(s) 166, 190, 274, 383
NspI RCATGY 2 cut(s) 190, 274
OliI CACNNNNGTG 1 cut(s) 71
PagI TCATGA 1 cut(s) 379
PciI ACATGT 2 cut(s) 186, 270
PcsI WCGNNNNNNNCGW 3 cut(s) 290, 299, 308
PdmI GAANNNNTTC 1 cut(s) 155
PscI ACATGT 2 cut(s) 186, 270
Psp124BI GAGCTC 1 cut(s) 184
Psp6I CCWGG 1 cut(s) 433
PspGI CCWGG 1 cut(s) 433
PstI CTGCAG 1 cut(s) 223
RseI CAYNNNNRTG 2 cut(s) 71, 381
SacI GAGCTC 1 cut(s) 184
Sau3AI GATC 3 cut(s) 326, 367, 397
ScrFI CCNGG 1 cut(s) 435
SduI GDGCHC 2 cut(s) 116, 184
SetI ASST 5 cut(s) 81, 138, 175, 184, 266
SfaNI GCATC 1 cut(s) 240
SfcI CTRYAG 1 cut(s) 219
SmiMI CAYNNNNRTG 2 cut(s) 71, 381
SmlI CTYRAG 1 cut(s) 69
SmoI CTYRAG 1 cut(s) 69
Sse9I AATT 2 cut(s) 83, 203
SstI GAGCTC 1 cut(s) 184
StyD4I CCNGG 1 cut(s) 433
StyI CCWWGG 1 cut(s) 343
TaqI TCGA 3 cut(s) 87, 226, 311
TasI AATT 2 cut(s) 83, 203
TspDTI ATGAA 2 cut(s) 297, 365
XapI RAATTY 2 cut(s) 83, 203
XceI RCATGY 2 cut(s) 190, 274
XmiI GTMKAC 1 cut(s) 320
XmnI GAANNNNTTC 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.