Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004295

Physical Location & Seq

Genomic Coordinates Forward (+)

8068418 .. 8071795

Gene Structure 3378 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G22810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

ATGGAGAAACCAGTGTTTGCACCATGGCGTTCCGACCAAGTTTTCCGGCCACCGGAGACACCATTAGAGCCGATGGAGTTTCTCTCTCGCTCCTGGAGCGTATCAGCTCACGAAGTCTCCAAAGCTCTCACTCCTTCTCAGCAACTCCTCTCAAAAGCCTCAATCGAAAACACCACCGTCATTCTCGAAGAACCCATCGCCGCCGGCGAGACCGAAACGGAGGACAACAGCTTCGTCTCCGGAAACCCTTTCTCCTTCGCTTGCTCAGAAACTTCTCAGATGGTCATGGATCGTATCTTATCTCAGTCTCAGGAAGTGTCGCCACGAACATCTGGTCGGCTTTCTCATAGCAGCGGTCCTCTCAATGGTTCTTTAACCGACAGTCCTCCGATTTCGCCGCATCAAGTCGACGACATTAAGCAATTTTGCCGATCAAACAACAATTTCAACTCTCAATACCGTTCAACGGGAACAACTCCGGGACCTATCACTGCAACAACTACACAGTCCAAGACAGTTGGACGGTGGTTGAAAGACAGGAGGGAGAAAAAGAAGGAAGAGATGAGAGCACACAATGCTCAGATACATGCTGCTGTATCAGTAGCTGGTGTGGCAGCCGCGGTGGCTGCTATCGCGGCTGCAACTGCTGCTTCGTCGAGTGCTGGAAAAGATGAGAATATGGCTAAGACGGATATGGCTGTGGCTTCTGCTGCAACACTTGTGGCTGCTCAATGTGTGGAAGCTGCTGAAGTTATGGGAGCTGAGAGGGATCATTTAGCTTCCGTTGTTAGTTCTGCTGTTAATGTTCGATCTGCGGGAGATATCATGACATTAACCGCTGGAGCAGCCACAGCGTTAAGAGGAGTGGCTACATTGAAGGCTAGAGCTATGAAGGAGGTGTGGCACATTGCATCAGTTATTCCAATGGATAAAGGAATCAATCTCGGAGGTTGCAGCAATGTTAATGGTAACGGGAGCTATGTCAGCTCAAGCAGCAGTCATAGTGGCGAATTTCTAGTTGAGGATAATTTCTTGGGACATTGCAATAGAGAATGGCTTGCTCGAGGTGGCCAACTTCTTAAACGCACCCGCAAAGGTGATCTTCATTGGAAAATAGTTTCAGTTTACATAAACAGGCTAAATCAAGTTATATTGAAGATGAAGAGCAGGCATGTAGGAGGGACCTTCACGAAGAAGAACAAAAATGTTGTGATTGATGTGATCAAAAACGTTCAAGCTTGGCCAGGCCGCCATTTGCTGGAAGGAGGAGAGGATTTGAGATACTTTGGGTTAAAGACGGTTCCGCGAGGGATTGTAGAATTTCAGTGCAAGAGCCAGAGAGAGTATGAAATGTGGACACAAGGTGTCTCAAGGCTTATTGCTGTTGCTGCCGAGAGGAATAACAGATATAGGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_canalis PH_2

Protein Analysis

472

Amino Acids

51.27

Weight (kDa)

9.2

Isoelectric Point (pI)

36.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_canalis	PF05703	18 - 312	2.7e-119	Auxin canalisation
PH_2	PF08458	358 - 462	2.3e-42	Plant pleckstrin homology-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22810 AT3G22810 AT3G22810 AT4G14740 AT4G14740 AT4G14740 AT4G14740 AT5G43870 AT5G43870
fragaria_vesca	FvH4_4g01030 FvH4_4g01030 FvH4_4g01030 FvH4_4g01030
malus_domestica	MD13G1198600.v1.1 MD16G1198700.v1.1
prunus_persica	Prupe.1G020300_v2.0.a1 Prupe.1G020300_v2.0.a1
pyrus_communis	pycom13g17240 pycom16g16750
rosa_chinensis	RchiOBHm_Chr4g0387611
rosa_laevigata	RLG00000010107
rosa_multiflora	Rmu_sc0003953.1_g000004 Rmu_sc0012183.1_g000002
rosa_roxburghii	Rroxscaffold_5G00334290
rosa_rugosa	Rorug03G0311200 Rorug03G0311300 Rorug03G0311400
rosa_samantha	Rh4AG017100 Rh4BG011900 Rh4CG018300 Rh4DG012900
rosa_wichuraiana	Rw4G001090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1258
AccI	GTMKAC	1 cut(s)	408
AccII	CGCG	3 cut(s)	620, 635, 1306
AccIII	TCCGGA	1 cut(s)	239
AclI	AACGTT	1 cut(s)	1230
AclWI	GGATC	2 cut(s)	297, 777
AcoI	YGGCCR	3 cut(s)	47, 1069, 1241
AcsI	RAATTY	2 cut(s)	1010, 1319
AcuI	CTGAAG	1 cut(s)	768
AdeI	CACNNNGTG	1 cut(s)	1364
AfiI	CCNNNNNNNGG	4 cut(s)	52, 365, 466, 1258
AgsI	TTSAA	6 cut(s)	448, 465, 532, 877, 1156, 1235
AjnI	CCWGG	2 cut(s)	92, 1243
Alw21I	GWGCWC	1 cut(s)	571
Alw26I	GTCTC	6 cut(s)	50, 121, 203, 241, 312, 1372
AlwI	GGATC	2 cut(s)	297, 777
AlwNI	CAGNNNCTG	1 cut(s)	605
Ama87I	CYCGRG	1 cut(s)	1062
Aor13HI	TCCGGA	1 cut(s)	239
AoxI	GGCC	4 cut(s)	47, 1069, 1241, 1246
ApoI	RAATTY	2 cut(s)	1010, 1319
ArsI	GACNNNNNNTTYG	4 cut(s)	215, 247, 319, 351
AspS9I	GGNCC	3 cut(s)	356, 482, 1182
AsuC2I	CCSGG	1 cut(s)	480
AsuHPI	GGTGA	1 cut(s)	1109
AvaI	CYCGRG	1 cut(s)	1062
AvaII	GGWCC	3 cut(s)	356, 482, 1182
BalI	TGGCCA	2 cut(s)	1071, 1243
Bbv12I	GWGCWC	1 cut(s)	571
BccI	CCATC	3 cut(s)	67, 203, 274
BciT130I	CCWGG	2 cut(s)	94, 1245
BclI	TGATCA	1 cut(s)	1221
BcnI	CCSGG	1 cut(s)	480
BcoDI	GTCTC	6 cut(s)	50, 121, 203, 241, 312, 1372
BfaI	CTAG	2 cut(s)	882, 1016
BglI	GCCNNNNNGGC	1 cut(s)	623
Bme1390I	CCNGG	3 cut(s)	94, 480, 1245
Bme18I	GGWCC	3 cut(s)	356, 482, 1182
BmeT110I	CYCGRG	1 cut(s)	1062
BmgT120I	GGNCC	3 cut(s)	356, 482, 1182
BmiI	GGNNCC	3 cut(s)	483, 1183, 1302
BmrFI	CCNGG	3 cut(s)	94, 480, 1245
BmsI	GCATC	2 cut(s)	409, 920
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
BpmI	CTGGAG	2 cut(s)	115, 861
BpuEI	CTTGAG	2 cut(s)	973, 1354
BpuMI	CCSGG	1 cut(s)	480
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	2 cut(s)	23, 618
BsaWI	WCCGGW	2 cut(s)	52, 239
BsaXI	ACNNNNNCTCC	4 cut(s)	101, 131, 236, 266
Bsc4I	CCNNNNNNNGG	4 cut(s)	52, 365, 466, 1258
Bse118I	RCCGGY	1 cut(s)	203
Bse1I	ACTGG	1 cut(s)	11
Bse3DI	GCAATG	3 cut(s)	906, 964, 1039
BseAI	TCCGGA	1 cut(s)	239
BseBI	CCWGG	2 cut(s)	94, 1245
BseDI	CCNNGG	2 cut(s)	23, 618
BseLI	CCNNNNNNNGG	4 cut(s)	52, 365, 466, 1258
BseMI	GCAATG	3 cut(s)	906, 964, 1039
BseMII	CTCAG	7 cut(s)	152, 279, 290, 317, 323, 593, 753
BseNI	ACTGG	1 cut(s)	11
BseRI	GAGGAG	3 cut(s)	137, 876, 1281
Bsh1236I	CGCG	3 cut(s)	620, 635, 1306
BshFI	GGCC	4 cut(s)	49, 1071, 1243, 1248
BsiHKAI	GWGCWC	1 cut(s)	571
BsiHKCI	CYCGRG	1 cut(s)	1062
BsiSI	CCGG	5 cut(s)	46, 53, 204, 240, 479
BslFI	GGGAC	3 cut(s)	495, 1050, 1195
BslI	CCNNNNNNNGG	4 cut(s)	52, 365, 466, 1258
BsmAI	GTCTC	6 cut(s)	50, 121, 203, 241, 312, 1372
BsmBI	CGTCTC	1 cut(s)	241
BsmFI	GGGAC	3 cut(s)	495, 1050, 1195
BsnI	GGCC	4 cut(s)	49, 1071, 1243, 1248
Bso31I	GGTCTC	1 cut(s)	203
BsoBI	CYCGRG	1 cut(s)	1062
Bsp1286I	GDGCHC	1 cut(s)	571
Bsp13I	TCCGGA	1 cut(s)	239
Bsp143I	GATC	6 cut(s)	289, 431, 769, 809, 1099, 1221
Bsp19I	CCATGG	1 cut(s)	23
BspANI	GGCC	4 cut(s)	49, 1071, 1243, 1248
BspCNI	CTCAG	7 cut(s)	151, 278, 289, 316, 322, 592, 754
BspEI	TCCGGA	1 cut(s)	239
BspFNI	CGCG	3 cut(s)	620, 635, 1306
BspHI	TCATGA	1 cut(s)	825
BspLI	GGNNCC	3 cut(s)	483, 1183, 1302
BspPI	GGATC	2 cut(s)	297, 777
BspQI	GCTCTTC	1 cut(s)	1157
BspTNI	GGTCTC	1 cut(s)	203
BsrDI	GCAATG	3 cut(s)	906, 964, 1039
BsrFI	RCCGGY	1 cut(s)	203
BsrI	ACTGG	1 cut(s)	11
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	2 cut(s)	23, 618
BssMI	GATC	6 cut(s)	289, 431, 769, 809, 1099, 1221
BssT1I	CCWWGG	1 cut(s)	23
Bst2UI	CCWGG	2 cut(s)	94, 1245
Bst4CI	ACNGT	7 cut(s)	178, 383, 461, 507, 517, 525, 1300
Bst6I	CTCTTC	2 cut(s)	552, 1157
BstAPI	GCANNNNNTGC	2 cut(s)	575, 647
BstC8I	GCNNGC	4 cut(s)	205, 262, 1059, 1169
BstDEI	CTNAG	8 cut(s)	138, 265, 276, 303, 309, 579, 684, 762
BstDSI	CCRYGG	2 cut(s)	23, 618
BstFNI	CGCG	3 cut(s)	620, 635, 1306
BstKTI	GATC	6 cut(s)	292, 434, 772, 812, 1102, 1224
BstMAI	GTCTC	6 cut(s)	50, 121, 203, 241, 312, 1372
BstMBI	GATC	6 cut(s)	289, 431, 769, 809, 1099, 1221
BstNI	CCWGG	2 cut(s)	94, 1245
BstNSI	RCATGY	2 cut(s)	590, 1175
BstSCI	CCNGG	3 cut(s)	92, 478, 1243
BstUI	CGCG	3 cut(s)	620, 635, 1306
BsuRI	GGCC	4 cut(s)	49, 1071, 1243, 1248
BtgI	CCRYGG	2 cut(s)	23, 618
BtgZI	GCGATG	1 cut(s)	181
BtsI	GCAGTG	1 cut(s)	489
BtsIMutI	CAGTG	3 cut(s)	18, 489, 1331
Cac8I	GCNNGC	4 cut(s)	205, 262, 1059, 1169
CaiI	CAGNNNCTG	1 cut(s)	605
CciI	TCATGA	1 cut(s)	825
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	3 cut(s)	356, 482, 1182
Cfr42I	CCGCGG	1 cut(s)	621
CspCI	CAANNNNNGTGG	2 cut(s)	702, 737
CviAII	CATG	5 cut(s)	24, 286, 587, 826, 1172
DdeI	CTNAG	8 cut(s)	138, 265, 276, 303, 309, 579, 684, 762
DpnI	GATC	6 cut(s)	291, 433, 771, 811, 1101, 1223
DpnII	GATC	6 cut(s)	289, 431, 769, 809, 1099, 1221
DraIII	CACNNNGTG	1 cut(s)	1364
EaeI	YGGCCR	3 cut(s)	47, 1069, 1241
Eam1104I	CTCTTC	2 cut(s)	552, 1157
EarI	CTCTTC	2 cut(s)	552, 1157
Eco130I	CCWWGG	1 cut(s)	23
Eco31I	GGTCTC	1 cut(s)	203
Eco32I	GATATC	1 cut(s)	823
Eco47I	GGWCC	3 cut(s)	356, 482, 1182
Eco57I	CTGAAG	1 cut(s)	768
Eco88I	CYCGRG	1 cut(s)	1062
EcoO109I	RGGNCCY	2 cut(s)	482, 1182
EcoRII	CCWGG	2 cut(s)	92, 1243
EcoRV	GATATC	1 cut(s)	823
EcoT14I	CCWWGG	1 cut(s)	23
ErhI	CCWWGG	1 cut(s)	23
Esp3I	CGTCTC	1 cut(s)	241
FaeI	CATG	5 cut(s)	27, 289, 590, 829, 1175
FalI	AAGNNNNNCTT	2 cut(s)	1086, 1118
FaqI	GGGAC	3 cut(s)	495, 1050, 1195
FatI	CATG	5 cut(s)	23, 285, 586, 825, 1171
FauI	CCCGC	2 cut(s)	808, 1097
FbaI	TGATCA	1 cut(s)	1221
FblI	GTMKAC	1 cut(s)	408
FspBI	CTAG	2 cut(s)	882, 1016
GsuI	CTGGAG	2 cut(s)	115, 861
HaeIII	GGCC	4 cut(s)	49, 1071, 1243, 1248
HapII	CCGG	5 cut(s)	46, 53, 204, 240, 479
Hin1II	CATG	5 cut(s)	27, 289, 590, 829, 1175
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HindIII	AAGCTT	1 cut(s)	1236
HinfI	GANTC	1 cut(s)	936
HpaII	CCGG	5 cut(s)	46, 53, 204, 240, 479
HphI	GGTGA	1 cut(s)	1109
Hpy166II	GTNNAC	3 cut(s)	409, 1126, 1356
Hpy188I	TCNGA	6 cut(s)	34, 268, 279, 390, 582, 947
Hpy188III	TCNNGA	6 cut(s)	110, 185, 240, 311, 826, 1189
Hpy8I	GTNNAC	3 cut(s)	409, 1126, 1356
Hpy99I	CGWCG	2 cut(s)	413, 658
HpyAV	CCTTC	7 cut(s)	144, 265, 547, 871, 886, 1195, 1256
HpyCH4III	ACNGT	7 cut(s)	178, 383, 461, 507, 517, 525, 1300
HpyCH4IV	ACGT	1 cut(s)	1230
HpyCH4V	TGCA	8 cut(s)	20, 494, 641, 713, 911, 954, 1044, 1329
HpyF3I	CTNAG	8 cut(s)	138, 265, 276, 303, 309, 579, 684, 762
HpySE526I	ACGT	1 cut(s)	1230
Hsp92II	CATG	5 cut(s)	27, 289, 590, 829, 1175
Kpn2I	TCCGGA	1 cut(s)	239
KroI	GCCGGC	1 cut(s)	203
KroNI	GCCGGC	1 cut(s)	205
Ksp22I	TGATCA	1 cut(s)	1221
KspI	CCGCGG	1 cut(s)	621
Kzo9I	GATC	6 cut(s)	289, 431, 769, 809, 1099, 1221
LguI	GCTCTTC	1 cut(s)	1157
LmnI	GCTCC	5 cut(s)	95, 96, 758, 842, 975
LweI	GCATC	2 cut(s)	409, 920
MaeI	CTAG	2 cut(s)	882, 1016
MaeII	ACGT	1 cut(s)	1230
MaeIII	GTNAC	1 cut(s)	968
MalI	GATC	6 cut(s)	291, 433, 771, 811, 1101, 1223
MboI	GATC	6 cut(s)	289, 431, 769, 809, 1099, 1221
MboII	GAAGA	7 cut(s)	200, 569, 1094, 1168, 1174, 1204, 1207
MhlI	GDGCHC	1 cut(s)	571
MlsI	TGGCCA	2 cut(s)	1071, 1243
MluCI	AATT	5 cut(s)	422, 442, 1010, 1027, 1319
MluNI	TGGCCA	2 cut(s)	1071, 1243
MmeI	TCCRAC	2 cut(s)	57, 499
Mox20I	TGGCCA	2 cut(s)	1071, 1243
MreI	CGCCGGCG	1 cut(s)	203
MroI	TCCGGA	1 cut(s)	239
MroNI	GCCGGC	1 cut(s)	203
MscI	TGGCCA	2 cut(s)	1071, 1243
MseI	TTAA	8 cut(s)	374, 417, 801, 833, 857, 963, 1080, 1292
Msp20I	TGGCCA	2 cut(s)	1071, 1243
MspA1I	CMGCKG	3 cut(s)	354, 620, 839
MspI	CCGG	5 cut(s)	46, 53, 204, 240, 479
MspR9I	CCNGG	3 cut(s)	94, 480, 1245
MvaI	CCWGG	2 cut(s)	94, 1245
MvnI	CGCG	3 cut(s)	620, 635, 1306
NaeI	GCCGGC	1 cut(s)	205
NciI	CCSGG	1 cut(s)	480
NcoI	CCATGG	1 cut(s)	23
NdeII	GATC	6 cut(s)	289, 431, 769, 809, 1099, 1221
NgoMIV	GCCGGC	1 cut(s)	203
NlaIII	CATG	5 cut(s)	27, 289, 590, 829, 1175
NlaIV	GGNNCC	3 cut(s)	483, 1183, 1302
NmeAIII	GCCGAG	1 cut(s)	1417
NspI	RCATGY	2 cut(s)	590, 1175
PaeR7I	CTCGAG	1 cut(s)	1062
PagI	TCATGA	1 cut(s)	825
PciSI	GCTCTTC	1 cut(s)	1157
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PdiI	GCCGGC	1 cut(s)	205
PfeI	GAWTC	1 cut(s)	936
PflMI	CCANNNNNTGG	1 cut(s)	1258
PfoI	TCCNGGA	2 cut(s)	92, 478
PpuMI	RGGWCCY	2 cut(s)	482, 1182
Psp1406I	AACGTT	1 cut(s)	1230
Psp5II	RGGWCCY	2 cut(s)	482, 1182
Psp6I	CCWGG	2 cut(s)	92, 1243
PspGI	CCWGG	2 cut(s)	92, 1243
PspN4I	GGNNCC	3 cut(s)	483, 1183, 1302
PspPI	GGNCC	3 cut(s)	356, 482, 1182
PspPPI	RGGWCCY	2 cut(s)	482, 1182
PspXI	VCTCGAGB	1 cut(s)	1062
PstNI	CAGNNNCTG	1 cut(s)	605
SacII	CCGCGG	1 cut(s)	621
SalI	GTCGAC	1 cut(s)	407
SapI	GCTCTTC	1 cut(s)	1157
SaqAI	TTAA	8 cut(s)	374, 417, 801, 833, 857, 963, 1080, 1292
Sau3AI	GATC	6 cut(s)	289, 431, 769, 809, 1099, 1221
Sau96I	GGNCC	3 cut(s)	356, 482, 1182
ScrFI	CCNGG	3 cut(s)	94, 480, 1245
SduI	GDGCHC	1 cut(s)	571
SfaNI	GCATC	2 cut(s)	409, 920
Sfr274I	CTCGAG	1 cut(s)	1062
Sfr303I	CCGCGG	1 cut(s)	621
SgrAI	CRCCGGYG	1 cut(s)	203
SgrBI	CCGCGG	1 cut(s)	621
SinI	GGWCC	3 cut(s)	356, 482, 1182
SlaI	CTCGAG	1 cut(s)	1062
SmlI	CTYRAG	3 cut(s)	988, 1062, 1369
SmoI	CTYRAG	3 cut(s)	988, 1062, 1369
Sse9I	AATT	5 cut(s)	422, 442, 1010, 1027, 1319
SspMI	CTAG	2 cut(s)	882, 1016
StyD4I	CCNGG	3 cut(s)	92, 478, 1243
StyI	CCWWGG	1 cut(s)	23
TaaI	ACNGT	7 cut(s)	178, 383, 461, 507, 517, 525, 1300
TaiI	ACGT	1 cut(s)	1233
TaqI	TCGA	6 cut(s)	165, 186, 408, 656, 808, 1063
TaqII	GACCGA	1 cut(s)	227
TasI	AATT	5 cut(s)	422, 442, 1010, 1027, 1319
TauI	GCSGC	5 cut(s)	203, 400, 620, 638, 1251
TfiI	GAWTC	1 cut(s)	936
Tru1I	TTAA	8 cut(s)	374, 417, 801, 833, 857, 963, 1080, 1292
Tru9I	TTAA	8 cut(s)	374, 417, 801, 833, 857, 963, 1080, 1292
TscAI	CASTG	3 cut(s)	18, 496, 1331
TspDTI	ATGAA	4 cut(s)	905, 1094, 1175, 1362
TspGWI	ACGGA	3 cut(s)	233, 704, 772
TspRI	CASTG	3 cut(s)	18, 496, 1331
Van91I	CCANNNNNTGG	1 cut(s)	1258
VpaK11BI	GGWCC	3 cut(s)	356, 482, 1182
XapI	RAATTY	2 cut(s)	1010, 1319
XceI	RCATGY	2 cut(s)	590, 1175
XhoI	CTCGAG	1 cut(s)	1062
XmiI	GTMKAC	1 cut(s)	408
XspI	CTAG	2 cut(s)	882, 1016

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.