Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004295

Physical Location & Seq

Genomic Coordinates Reverse (-)

8450158 .. 8454159

Gene Structure 4002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G14740.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

ATGGAAAAACTCATGGTTCCGACATGGAGACCCGACCCGGTTTACCGTCCACCGGAAACACCACTCGAACCGATGGAGTTTTTAGCTCGTTCATGGAGCGTCTCTGCTCTCGAAGTCTCCAAGGCTCTAACACCACCCAACCCTCAGATTCTCCTCTCCAAAACCGAAGAAGAAGAAGAAGAAGAACCCATCTCCTCTGTCGTAGACGGCGACGGCGACACGGAAGACACCGGACTTGTCACCGGAAACCCATTCTCCTTCGCTTGTTCAGAAACTTCTCAAATGGTCATGGATCGTATCTTGTCTCACTCTCAAGAAGTATCACCAAGAACATCTGGTCGGCTATCTCACAGTAGTGGTCCACTTAATGGTTCTTTGACCGACAGTCCTCCTGTGTCTCCTCCCGAATCCGACGACATTAAGCAATTTTGCAGAGCGAACAAAAATTCATTGAACAGTGTAAATTCTCAGTTCCGTTCAACGGCGGCAACTCCGGGACCTATAACCGCTACAGCTACACAGTCCAAGACGGTGGGACGGTGGCTTAAGGACCGGAGAGAGAAAAAGAAAGAGGAGACTCGGGCTCATAACGCTCAGATTCACGCTGCTGTCTCTGTCGCCGGCGTTGCTGCAGCTGTTGCTGCTATTGCAGCAGCCACCGCTGCGTCTTCTAGCTGTGGTAAGGATGAGCAGATGGCTAAAACTGACATGGCCGTTGCTTCTGCTGCGACCCTTGTGGCTGCTCAGTGTGTGGAAGCTGCTGAAGTTATGGGAGCTGAGAGAGAGTATTTGGCTTCTGTTGTTAGCTCCGCCGTCAATGTTCGTTCTGCCGGAGATATTATGACTCTCACCGCCGGAGCAGCTACAGCTTTAAGAGGAGTGCAAACATTGAAGGCAAGGGCAATGAAGGAAGTGTGGAACATAGCATCAGTGATACCAATGGATAAAGGACTCACTTCTACAGGAGGAAGCAGCAATAATGTTAATGGTAGCAATGGAAGCTCAAGCAGTAGTCACAGTGGTGAACTTGTACAACAGGAGAATTTCTTGGGAACTTGTAGTAGAGAATGGCTCGCTAGAGGTTGTGAACTCCTCAAACGCACTCGCAAAGGTGATCTCCACTGGAAGATAGTATCTGTTTACATCAACAAAATGAATCAGGTTATGTTGAAGATGAAGAGCAGGCATGTTGGAGGAACCTTCACCAAGAAGAAAAAGAACATTGTGCTTGATGTGATCAAGAATGTCCCGGCCTGGCCTGGACGACATTTGCTAGAGGGAGGAGATGATCTAAGATACTTCGGTTTGAAGACGGTTATGCGAGGTGATGTTGAATTCGAGGTCAAGAGCCAAAGGGAATATGAAATGTGGACACAAGGTGTCTCAAGGCTTCTTGTTCTTGCTGCTGAGAGGAAGTTTAGGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_canalis PH_2

Protein Analysis

475

Amino Acids

51.38

Weight (kDa)

8.41

Isoelectric Point (pI)

41.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_canalis	PF05703	2 - 178	1.2e-77	Auxin canalisation
PH_2	PF08458	224 - 328	2.7e-43	Plant pleckstrin homology-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22810 AT3G22810 AT3G22810 AT4G14740 AT4G14740 AT4G14740 AT4G14740 AT5G43870 AT5G43870
fragaria_vesca	FvH4_4g01030 FvH4_4g01030 FvH4_4g01030 FvH4_4g01030
malus_domestica	MD13G1198600.v1.1 MD16G1198700.v1.1
prunus_persica	Prupe.1G020300_v2.0.a1 Prupe.1G020300_v2.0.a1
pyrus_communis	pycom13g17240 pycom16g16750
rosa_chinensis	RchiOBHm_Chr4g0387611
rosa_laevigata	RLG00000010107
rosa_multiflora	Rmu_sc0003953.1_g000004 Rmu_sc0012183.1_g000002
rosa_roxburghii	Rroxscaffold_5G00334290
rosa_rugosa	Rorug03G0311200 Rorug03G0311300 Rorug03G0311400
rosa_samantha	Rh4AG017100 Rh4BG011900 Rh4CG018300 Rh4DG012900
rosa_wichuraiana	Rw4G001090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	368
AccI	GTMKAC	1 cut(s)	204
AciI	CCGC	5 cut(s)	485, 507, 660, 810, 852
AclWI	GGATC	1 cut(s)	300
AcoI	YGGCCR	1 cut(s)	711
AcsI	RAATTY	4 cut(s)	445, 463, 1042, 1334
AcuI	CTGAAG	1 cut(s)	783
AdeI	CACNNNGTG	1 cut(s)	1379
AfaI	GTAC	1 cut(s)	1032
AfiI	CCNNNNNNNGG	3 cut(s)	52, 368, 481
AflII	CTTAAG	1 cut(s)	545
AgsI	TTSAA	6 cut(s)	454, 480, 892, 1171, 1309, 1334
AhdI	GACNNNNNGTC	1 cut(s)	384
AjnI	CCWGG	2 cut(s)	1253, 1258
AleI	CACNNNNGTG	2 cut(s)	354, 1020
Alw26I	GTCTC	8 cut(s)	22, 106, 121, 309, 402, 569, 616, 1387
AlwI	GGATC	1 cut(s)	300
Ama87I	CYCGRG	1 cut(s)	579
AoxI	GGCC	3 cut(s)	711, 1251, 1256
ApoI	RAATTY	4 cut(s)	445, 463, 1042, 1334
AspS9I	GGNCC	3 cut(s)	359, 497, 550
AsuC2I	CCSGG	3 cut(s)	38, 495, 1250
AsuHPI	GGTGA	7 cut(s)	232, 315, 841, 1034, 1124, 1195, 1337
AvaI	CYCGRG	1 cut(s)	579
AvaII	GGWCC	3 cut(s)	359, 497, 550
BaeI	ACNNNNGTAYC	2 cut(s)	1288, 1321
BanII	GRGCYC	1 cut(s)	586
BbsI	GAAGAC	3 cut(s)	231, 660, 1316
BccI	CCATC	3 cut(s)	67, 197, 688
BceAI	ACGGC	5 cut(s)	223, 229, 498, 698, 797
BciT130I	CCWGG	2 cut(s)	1255, 1260
BclI	TGATCA	1 cut(s)	1236
BcnI	CCSGG	3 cut(s)	38, 495, 1250
BcoDI	GTCTC	8 cut(s)	22, 106, 121, 309, 402, 569, 616, 1387
BfaI	CTAG	3 cut(s)	672, 1077, 1274
BfmI	CTRYAG	4 cut(s)	510, 630, 864, 960
BfrI	CTTAAG	1 cut(s)	545
Bme1390I	CCNGG	5 cut(s)	38, 495, 1250, 1255, 1260
Bme18I	GGWCC	3 cut(s)	359, 497, 550
BmeRI	GACNNNNNGTC	1 cut(s)	384
BmeT110I	CYCGRG	1 cut(s)	579
BmgT120I	GGNCC	3 cut(s)	359, 497, 550
BmiI	GGNNCC	3 cut(s)	18, 498, 1198
BmrFI	CCNGG	5 cut(s)	38, 495, 1250, 1255, 1260
BmsI	GCATC	1 cut(s)	935
BpiI	GAAGAC	3 cut(s)	231, 660, 1316
BplI	GAGNNNNNCTC	2 cut(s)	1056, 1088
BpuEI	CTTGAG	3 cut(s)	297, 988, 1369
BpuMI	CCSGG	3 cut(s)	38, 495, 1250
BsaI	GGTCTC	1 cut(s)	22
BsaJI	CCNNGG	1 cut(s)	120
BsaWI	WCCGGW	4 cut(s)	52, 230, 242, 552
BsaXI	ACNNNNNCTCC	2 cut(s)	239, 269
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 368, 481
Bse118I	RCCGGY	1 cut(s)	620
Bse1I	ACTGG	1 cut(s)	1127
Bse3DI	GCAATG	2 cut(s)	909, 1000
BseBI	CCWGG	2 cut(s)	1255, 1260
BseDI	CCNNGG	1 cut(s)	120
BseGI	GGATG	2 cut(s)	691, 1428
BseLI	CCNNNNNNNGG	3 cut(s)	52, 368, 481
BseMI	GCAATG	2 cut(s)	909, 1000
BseMII	CTCAG	6 cut(s)	158, 482, 608, 758, 768, 1398
BseNI	ACTGG	1 cut(s)	1127
BseRI	GAGGAG	7 cut(s)	143, 184, 390, 587, 891, 1082, 1296
BshFI	GGCC	3 cut(s)	713, 1253, 1258
BsiHKCI	CYCGRG	1 cut(s)	579
BslFI	GGGAC	3 cut(s)	510, 549, 1232
BslI	CCNNNNNNNGG	3 cut(s)	52, 368, 481
BsmAI	GTCTC	8 cut(s)	22, 106, 121, 309, 402, 569, 616, 1387
BsmBI	CGTCTC	1 cut(s)	106
BsmFI	GGGAC	3 cut(s)	510, 549, 1232
BsnI	GGCC	3 cut(s)	713, 1253, 1258
Bso31I	GGTCTC	1 cut(s)	22
BsoBI	CYCGRG	1 cut(s)	579
Bsp1286I	GDGCHC	1 cut(s)	586
Bsp1407I	TGTACA	1 cut(s)	1030
Bsp143I	GATC	4 cut(s)	292, 1114, 1236, 1288
BspACI	CCGC	5 cut(s)	485, 507, 660, 810, 852
BspANI	GGCC	3 cut(s)	713, 1253, 1258
BspCNI	CTCAG	6 cut(s)	157, 481, 607, 757, 769, 1399
BspLI	GGNNCC	3 cut(s)	18, 498, 1198
BspMAI	CTGCAG	1 cut(s)	634
BspPI	GGATC	1 cut(s)	300
BspQI	GCTCTTC	1 cut(s)	1172
BspTI	CTTAAG	1 cut(s)	545
BspTNI	GGTCTC	1 cut(s)	22
BsrDI	GCAATG	2 cut(s)	909, 1000
BsrFI	RCCGGY	1 cut(s)	620
BsrGI	TGTACA	1 cut(s)	1030
BsrI	ACTGG	1 cut(s)	1127
BssAI	RCCGGY	1 cut(s)	620
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	4 cut(s)	292, 1114, 1236, 1288
BssT1I	CCWWGG	1 cut(s)	120
Bst2UI	CCWGG	2 cut(s)	1255, 1260
Bst4CI	ACNGT	9 cut(s)	47, 353, 386, 458, 522, 532, 540, 1019, 1315
Bst6I	CTCTTC	1 cut(s)	1172
BstAFI	CTTAAG	1 cut(s)	545
BstAPI	GCANNNNNTGC	1 cut(s)	638
BstAUI	TGTACA	1 cut(s)	1030
BstC8I	GCNNGC	3 cut(s)	622, 1074, 1184
BstDEI	CTNAG	7 cut(s)	144, 468, 594, 744, 777, 1292, 1407
BstF5I	GGATG	2 cut(s)	691, 1428
BstKTI	GATC	4 cut(s)	295, 1117, 1239, 1291
BstMAI	GTCTC	8 cut(s)	22, 106, 121, 309, 402, 569, 616, 1387
BstMBI	GATC	4 cut(s)	292, 1114, 1236, 1288
BstNI	CCWGG	2 cut(s)	1255, 1260
BstNSI	RCATGY	1 cut(s)	1190
BstSCI	CCNGG	5 cut(s)	36, 493, 1248, 1253, 1258
BstSFI	CTRYAG	4 cut(s)	510, 630, 864, 960
BstV2I	GAAGAC	3 cut(s)	231, 660, 1316
BstXI	CCANNNNNNTGG	1 cut(s)	532
BsuRI	GGCC	3 cut(s)	713, 1253, 1258
BtsCI	GGATG	2 cut(s)	691, 1428
BtsIMutI	CAGTG	5 cut(s)	463, 752, 936, 1024, 1120
Cac8I	GCNNGC	3 cut(s)	622, 1074, 1184
Cfr10I	RCCGGY	1 cut(s)	620
Cfr13I	GGNCC	3 cut(s)	359, 497, 550
CseI	GACGC	2 cut(s)	88, 654
Csp6I	GTAC	1 cut(s)	1031
CviAII	CATG	6 cut(s)	13, 24, 93, 289, 709, 1187
CviQI	GTAC	1 cut(s)	1031
DdeI	CTNAG	7 cut(s)	144, 468, 594, 744, 777, 1292, 1407
DpnI	GATC	4 cut(s)	294, 1116, 1238, 1290
DpnII	GATC	4 cut(s)	292, 1114, 1236, 1288
DraIII	CACNNNGTG	1 cut(s)	1379
DriI	GACNNNNNGTC	1 cut(s)	384
EaeI	YGGCCR	1 cut(s)	711
Eam1104I	CTCTTC	1 cut(s)	1172
Eam1105I	GACNNNNNGTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	1172
EciI	GGCGGA	1 cut(s)	799
Eco130I	CCWWGG	1 cut(s)	120
Eco24I	GRGCYC	1 cut(s)	586
Eco31I	GGTCTC	1 cut(s)	22
Eco47I	GGWCC	3 cut(s)	359, 497, 550
Eco57I	CTGAAG	1 cut(s)	783
Eco88I	CYCGRG	1 cut(s)	579
EcoO109I	RGGNCCY	1 cut(s)	497
EcoRI	GAATTC	1 cut(s)	1334
EcoRII	CCWGG	2 cut(s)	1253, 1258
EcoT14I	CCWWGG	1 cut(s)	120
EcoT38I	GRGCYC	1 cut(s)	586
ErhI	CCWWGG	1 cut(s)	120
Esp3I	CGTCTC	1 cut(s)	106
FaeI	CATG	6 cut(s)	16, 27, 96, 292, 712, 1190
FaqI	GGGAC	3 cut(s)	510, 549, 1232
FatI	CATG	6 cut(s)	12, 23, 92, 288, 708, 1186
FbaI	TGATCA	1 cut(s)	1236
FblI	GTMKAC	1 cut(s)	204
FokI	GGATG	1 cut(s)	698
FriOI	GRGCYC	1 cut(s)	586
FspBI	CTAG	3 cut(s)	672, 1077, 1274
HaeIII	GGCC	3 cut(s)	713, 1253, 1258
HgaI	GACGC	2 cut(s)	88, 654
Hin1II	CATG	6 cut(s)	16, 27, 96, 292, 712, 1190
HinfI	GANTC	7 cut(s)	148, 407, 577, 598, 844, 951, 1156
HphI	GGTGA	7 cut(s)	232, 315, 841, 1034, 1124, 1195, 1337
Hpy166II	GTNNAC	8 cut(s)	43, 50, 205, 362, 1025, 1088, 1141, 1371
Hpy188I	TCNGA	5 cut(s)	21, 147, 271, 412, 597
Hpy188III	TCNNGA	5 cut(s)	110, 314, 404, 1240, 1345
Hpy8I	GTNNAC	8 cut(s)	43, 50, 205, 362, 1025, 1088, 1141, 1371
Hpy99I	CGWCG	2 cut(s)	215, 416
HpyAV	CCTTC	4 cut(s)	268, 886, 901, 1210
HpyCH4III	ACNGT	9 cut(s)	47, 353, 386, 458, 522, 532, 540, 1019, 1315
HpyCH4V	TGCA	4 cut(s)	432, 632, 650, 883
HpyF3I	CTNAG	7 cut(s)	144, 468, 594, 744, 777, 1292, 1407
Hsp92II	CATG	6 cut(s)	16, 27, 96, 292, 712, 1190
KroI	GCCGGC	1 cut(s)	620
KroNI	GCCGGC	1 cut(s)	622
Ksp22I	TGATCA	1 cut(s)	1236
Kzo9I	GATC	4 cut(s)	292, 1114, 1236, 1288
LguI	GCTCTTC	1 cut(s)	1172
LmnI	GCTCC	4 cut(s)	96, 773, 812, 857
LweI	GCATC	1 cut(s)	935
MaeI	CTAG	3 cut(s)	672, 1077, 1274
MaeIII	GTNAC	2 cut(s)	238, 1013
MalI	GATC	4 cut(s)	294, 1116, 1238, 1290
MboI	GATC	4 cut(s)	292, 1114, 1236, 1288
MhlI	GDGCHC	1 cut(s)	586
MluCI	AATT	5 cut(s)	425, 445, 463, 1042, 1334
MlyI	GAGTC	3 cut(s)	571, 838, 945
MmeI	TCCRAC	3 cut(s)	44, 435, 1171
MreI	CGCCGGCG	1 cut(s)	620
MroNI	GCCGGC	1 cut(s)	620
MseI	TTAA	5 cut(s)	366, 420, 546, 872, 984
MslI	CAYNNNNRTG	2 cut(s)	354, 1020
MspA1I	CMGCKG	2 cut(s)	635, 662
MspCI	CTTAAG	1 cut(s)	545
MspR9I	CCNGG	5 cut(s)	38, 495, 1250, 1255, 1260
MvaI	CCWGG	2 cut(s)	1255, 1260
NaeI	GCCGGC	1 cut(s)	622
NciI	CCSGG	3 cut(s)	38, 495, 1250
NdeII	GATC	4 cut(s)	292, 1114, 1236, 1288
NgoMIV	GCCGGC	1 cut(s)	620
NlaIII	CATG	6 cut(s)	16, 27, 96, 292, 712, 1190
NlaIV	GGNNCC	3 cut(s)	18, 498, 1198
NmuCI	GTSAC	2 cut(s)	238, 1013
NspI	RCATGY	1 cut(s)	1190
OliI	CACNNNNGTG	2 cut(s)	354, 1020
PciSI	GCTCTTC	1 cut(s)	1172
PcsI	WCGNNNNNNNCGW	2 cut(s)	207, 213
PdiI	GCCGGC	1 cut(s)	622
PfeI	GAWTC	4 cut(s)	148, 407, 598, 1156
PflMI	CCANNNNNTGG	1 cut(s)	368
PfoI	TCCNGGA	1 cut(s)	493
PleI	GAGTC	3 cut(s)	571, 838, 945
PpsI	GAGTC	3 cut(s)	571, 838, 945
PpuMI	RGGWCCY	1 cut(s)	497
Psp5II	RGGWCCY	1 cut(s)	497
Psp6I	CCWGG	2 cut(s)	1253, 1258
PspGI	CCWGG	2 cut(s)	1253, 1258
PspN4I	GGNNCC	3 cut(s)	18, 498, 1198
PspPI	GGNCC	3 cut(s)	359, 497, 550
PspPPI	RGGWCCY	1 cut(s)	497
PstI	CTGCAG	1 cut(s)	634
PvuII	CAGCTG	1 cut(s)	635
RsaI	GTAC	1 cut(s)	1032
RsaNI	GTAC	1 cut(s)	1031
RseI	CAYNNNNRTG	2 cut(s)	354, 1020
SapI	GCTCTTC	1 cut(s)	1172
SaqAI	TTAA	5 cut(s)	366, 420, 546, 872, 984
Sau3AI	GATC	4 cut(s)	292, 1114, 1236, 1288
Sau96I	GGNCC	3 cut(s)	359, 497, 550
SchI	GAGTC	3 cut(s)	571, 838, 945
ScrFI	CCNGG	5 cut(s)	38, 495, 1250, 1255, 1260
SduI	GDGCHC	1 cut(s)	586
SfaNI	GCATC	1 cut(s)	935
SfcI	CTRYAG	4 cut(s)	510, 630, 864, 960
SgrAI	CRCCGGYG	1 cut(s)	620
SinI	GGWCC	3 cut(s)	359, 497, 550
SmiMI	CAYNNNNRTG	2 cut(s)	354, 1020
SmlI	CTYRAG	4 cut(s)	312, 545, 1003, 1384
SmoI	CTYRAG	4 cut(s)	312, 545, 1003, 1384
Sse9I	AATT	5 cut(s)	425, 445, 463, 1042, 1334
SsiI	CCGC	5 cut(s)	485, 507, 660, 810, 852
SspMI	CTAG	3 cut(s)	672, 1077, 1274
StyD4I	CCNGG	5 cut(s)	36, 493, 1248, 1253, 1258
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	9 cut(s)	47, 353, 386, 458, 522, 532, 540, 1019, 1315
TaqI	TCGA	3 cut(s)	66, 111, 1338
TaqII	GACCGA	1 cut(s)	395
TasI	AATT	5 cut(s)	425, 445, 463, 1042, 1334
TatI	WGTACW	1 cut(s)	1030
TauI	GCSGC	1 cut(s)	488
TfiI	GAWTC	4 cut(s)	148, 407, 598, 1156
Tru1I	TTAA	5 cut(s)	366, 420, 546, 872, 984
Tru9I	TTAA	5 cut(s)	366, 420, 546, 872, 984
TscAI	CASTG	5 cut(s)	463, 752, 936, 1024, 1127
TseFI	GTSAC	2 cut(s)	238, 1013
Tsp45I	GTSAC	2 cut(s)	238, 1013
TspDTI	ATGAA	6 cut(s)	81, 438, 920, 1169, 1190, 1377
TspGWI	ACGGA	2 cut(s)	236, 464
TspRI	CASTG	5 cut(s)	463, 752, 936, 1024, 1127
Van91I	CCANNNNNTGG	1 cut(s)	368
Vha464I	CTTAAG	1 cut(s)	545
VpaK11BI	GGWCC	3 cut(s)	359, 497, 550
XapI	RAATTY	4 cut(s)	445, 463, 1042, 1334
XceI	RCATGY	1 cut(s)	1190
XmiI	GTMKAC	1 cut(s)	204
XspI	CTAG	3 cut(s)	672, 1077, 1274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.