RLG00000010107

Plant pleckstrin homology-like region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0004295
Physical Location & Seq
Reverse (-)
63057707 .. 63061596
3890 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010107

Sequence Viewer

Length: 1098 bp
ATGACCGAGCAGTGGCGACCCGACCCGGCCCACTCCTCCCTCTTCCGGCCCCCGGAGACTCCCTGCGAGCCCATGGAGTTCCTCTCCCGCTCCTGGAGCGTCTCCGCTCTCGAAGTCTCCAAAGCCTTGGCTCCACCCCAAGGCCAACTCTCCAAGCTCAACCTCAACTCTGACACCACCGCTATTCCCGAGGACTTGGCCGGCGAGTTGGAGGACGCCGCCGCCGTCTCCGGCAACCCATTTTCGTTCGCTTCTTCCGAGACTTCTCAGCTCGTCATGGAGCGTATTATGTCACAGTCGCAGGAGGTGTCTCCCAGAACTTCAGGCAGGCTCTCTCACAGTAGTGGCCCTCTCAACGGTTCCTTAACCGACAGCCCGCCGGTCTCTCCTTCCGAAAACGATGACGTCAAGTATTGTCGCTCCAGCAATCACCACCTCAACAACCAATATAGAGCCGCCACGAACGGCGGAGTTACGGTGGCTGCGGGCGGTAAGACGGTGGGGAGGTGGCTGAAGGACAGGAGGGAGAAGAAGAAAGAGGAGGCGAGGGCTCATAATGCACAGCTCCATGCTGCTGTGTCTGTTGCCGGGGTGGCTTCTGCCATTGCCGCCATTGCTGCCGCCACGGCAGCTACTTCCGGGTCTGGAAAAGACGAGCAGATGGCTAAAACCGACATGGCAGTCGCCTCTGCTGCCACGTTGGTAGCTGCTCAATGTGTGGAGGCGGCTGAGGCCATGGGTGCTGAAAGGGAGCACCTTCACTCGGTTGTTAGCTCCGCCGTGAATGTCAGGTCTGCCGGGGATATCATGACGCTGACTGCCGGTGCTGCAACAGCATTGCGTGGTGCAGCAACTTTGAAGGCCAGGGCGTTGAAGGAAGTCTGGAACATTGCGGCGGTTATTCCTGTTGAAAAAGGGAATGCTGTAGCTGGAAATGGAGGCAGTAATGGTAATTCTAACAGTAGCTTCAGTGGTGAACTTGTTGCTGAGGAGAATTTCTTAGGCATTTGCAATAGAGAATTACTAGCCAAAGGCTGTGAGCTCCTGAAGCGCACCCGCAAAGGTAAATTTTTGCAGGCAGTAACTTTTCTTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_canalis PH_2

Protein Analysis

366

Amino Acids

38.16

Weight (kDa)

6.52

Isoelectric Point (pI)

37.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_canalis PF05703 18 - 306 1.1e-116 Auxin canalisation
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 680
AatII GACGTC 1 cut(s) 408
AccBSI CCGCTC 2 cut(s) 90, 107
AcoI YGGCCR 1 cut(s) 198
AcsI RAATTY 2 cut(s) 994, 1067
AcuI CTGAAG 4 cut(s) 306, 533, 952, 1067
AcyI GRCGYC 2 cut(s) 216, 405
AfiI CCNNNNNNNGG 7 cut(s) 12, 45, 52, 93, 140, 356, 763
AgsI TTSAA 3 cut(s) 859, 874, 911
AjnI CCWGG 2 cut(s) 92, 863
AleI CACNNNNGTG 1 cut(s) 342
AluBI AGCT 9 cut(s) 157, 271, 565, 632, 707, 774, 929, 966, 1042
AluI AGCT 9 cut(s) 157, 271, 565, 632, 707, 774, 929, 966, 1042
Alw21I GWGCWC 2 cut(s) 756, 1044
Alw26I GTCTC 7 cut(s) 50, 106, 121, 232, 254, 315, 388
Ama87I CYCGRG 1 cut(s) 188
AoxI GGCC 7 cut(s) 27, 47, 142, 198, 346, 732, 861
ApeKI GCWGC 8 cut(s) 482, 572, 617, 629, 692, 707, 827, 848
ApoI RAATTY 2 cut(s) 994, 1067
AspLEI GCGC 1 cut(s) 1053
AspS9I GGNCC 3 cut(s) 28, 48, 347
AsuC2I CCSGG 5 cut(s) 26, 53, 589, 640, 799
AsuHPI GGTGA 2 cut(s) 422, 986
AvaI CYCGRG 1 cut(s) 188
BanII GRGCYC 3 cut(s) 72, 553, 1044
BarI GAAGNNNNNNTAC 1 cut(s) 1074
Bbv12I GWGCWC 2 cut(s) 756, 1044
BbvCI CCTCAGC 2 cut(s) 729, 987
BbvI GCAGC 8 cut(s) 469, 559, 604, 641, 679, 694, 814, 860
BccI CCATC 1 cut(s) 655
BceAI ACGGC 4 cut(s) 209, 481, 642, 764
BciT130I CCWGG 2 cut(s) 94, 865
BcnI CCSGG 5 cut(s) 26, 53, 589, 640, 799
BcoDI GTCTC 7 cut(s) 50, 106, 121, 232, 254, 315, 388
BfaI CTAG 1 cut(s) 1025
BfmI CTRYAG 1 cut(s) 924
BglI GCCNNNNNGGC 2 cut(s) 593, 626
Bme1390I CCNGG 7 cut(s) 26, 53, 94, 589, 640, 799, 865
BmeT110I CYCGRG 1 cut(s) 188
BmgT120I GGNCC 3 cut(s) 28, 48, 347
BmiI GGNNCC 3 cut(s) 50, 132, 361
BmrFI CCNGG 7 cut(s) 26, 53, 94, 589, 640, 799, 865
BplI GAGNNNNNCTC 2 cut(s) 68, 100
BpmI CTGGAG 2 cut(s) 115, 406
Bpu10I CCTNAGC 2 cut(s) 729, 987
BpuMI CCSGG 5 cut(s) 26, 53, 589, 640, 799
BsaHI GRCGYC 2 cut(s) 216, 405
BsaI GGTCTC 1 cut(s) 388
BsaXI ACNNNNNCTCC 2 cut(s) 462, 492
Bsc4I CCNNNNNNNGG 7 cut(s) 12, 45, 52, 93, 140, 356, 763
Bse118I RCCGGY 3 cut(s) 200, 379, 821
Bse3DI GCAATG 4 cut(s) 603, 612, 836, 888
BseBI CCWGG 2 cut(s) 94, 865
BseLI CCNNNNNNNGG 7 cut(s) 12, 45, 52, 93, 140, 356, 763
BseMI GCAATG 4 cut(s) 603, 612, 836, 888
BseMII CTCAG 3 cut(s) 281, 720, 978
BseRI GAGGAG 3 cut(s) 25, 554, 1004
BseXI GCAGC 8 cut(s) 469, 559, 604, 641, 679, 694, 814, 860
BsgI GTGCAG 1 cut(s) 867
BshFI GGCC 7 cut(s) 29, 49, 144, 200, 348, 734, 863
BsiHKAI GWGCWC 2 cut(s) 756, 1044
BsiHKCI CYCGRG 1 cut(s) 188
BslI CCNNNNNNNGG 7 cut(s) 12, 45, 52, 93, 140, 356, 763
BsmAI GTCTC 7 cut(s) 50, 106, 121, 232, 254, 315, 388
BsmBI CGTCTC 2 cut(s) 106, 232
BsmI GAATGC 1 cut(s) 925
BsnI GGCC 7 cut(s) 29, 49, 144, 200, 348, 734, 863
Bso31I GGTCTC 1 cut(s) 388
BsoBI CYCGRG 1 cut(s) 188
Bsp1286I GDGCHC 4 cut(s) 72, 553, 756, 1044
Bsp19I CCATGG 2 cut(s) 72, 735
BspANI GGCC 7 cut(s) 29, 49, 144, 200, 348, 734, 863
BspCNI CTCAG 3 cut(s) 280, 721, 979
BspHI TCATGA 1 cut(s) 807
BspLI GGNNCC 3 cut(s) 50, 132, 361
BspTNI GGTCTC 1 cut(s) 388
BsrBI CCGCTC 2 cut(s) 90, 107
BsrDI GCAATG 4 cut(s) 603, 612, 836, 888
BsrFI RCCGGY 3 cut(s) 200, 379, 821
BssAI RCCGGY 3 cut(s) 200, 379, 821
BssNI GRCGYC 2 cut(s) 216, 405
BssT1I CCWWGG 4 cut(s) 72, 126, 139, 735
Bst2UI CCWGG 2 cut(s) 94, 865
Bst4CI ACNGT 6 cut(s) 297, 341, 359, 478, 499, 962
Bst6I CTCTTC 1 cut(s) 47
BstACI GRCGYC 2 cut(s) 216, 405
BstC8I GCNNGC 6 cut(s) 68, 202, 329, 377, 487, 1077
BstDEI CTNAG 4 cut(s) 267, 729, 987, 1000
BstDSI CCRYGG 3 cut(s) 72, 624, 735
BstHHI GCGC 1 cut(s) 1053
BstMAI GTCTC 7 cut(s) 50, 106, 121, 232, 254, 315, 388
BstNI CCWGG 2 cut(s) 94, 865
BstSCI CCNGG 7 cut(s) 24, 51, 92, 587, 638, 797, 863
BstSFI CTRYAG 1 cut(s) 924
BstV1I GCAGC 8 cut(s) 469, 559, 604, 641, 679, 694, 814, 860
BstXI CCANNNNNNTGG 1 cut(s) 127
BsuRI GGCC 7 cut(s) 29, 49, 144, 200, 348, 734, 863
BtgI CCRYGG 3 cut(s) 72, 624, 735
BtsI GCAGTG 1 cut(s) 17
BtsIMutI CAGTG 3 cut(s) 17, 976, 1093
Cac8I GCNNGC 6 cut(s) 68, 202, 329, 377, 487, 1077
CciI TCATGA 1 cut(s) 807
CfoI GCGC 1 cut(s) 1053
Cfr10I RCCGGY 3 cut(s) 200, 379, 821
Cfr13I GGNCC 3 cut(s) 28, 48, 347
CseI GACGC 3 cut(s) 88, 224, 820
CviAII CATG 6 cut(s) 73, 277, 569, 676, 736, 808
DdeI CTNAG 4 cut(s) 267, 729, 987, 1000
DrdI GACNNNNNNGTC 1 cut(s) 680
DseDI GACNNNNNNGTC 1 cut(s) 680
EaeI YGGCCR 1 cut(s) 198
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
EciI GGCGGA 2 cut(s) 483, 766
Ecl136II GAGCTC 1 cut(s) 1042
Eco130I CCWWGG 4 cut(s) 72, 126, 139, 735
Eco24I GRGCYC 3 cut(s) 72, 553, 1044
Eco31I GGTCTC 1 cut(s) 388
Eco32I GATATC 1 cut(s) 805
Eco53kI GAGCTC 1 cut(s) 1042
Eco57I CTGAAG 4 cut(s) 306, 533, 952, 1067
Eco88I CYCGRG 1 cut(s) 188
EcoICRI GAGCTC 1 cut(s) 1042
EcoRII CCWGG 2 cut(s) 92, 863
EcoRV GATATC 1 cut(s) 805
EcoT14I CCWWGG 4 cut(s) 72, 126, 139, 735
EcoT38I GRGCYC 3 cut(s) 72, 553, 1044
ErhI CCWWGG 4 cut(s) 72, 126, 139, 735
Esp3I CGTCTC 2 cut(s) 106, 232
FaeI CATG 6 cut(s) 76, 280, 572, 679, 739, 811
FaiI YATR 9 cut(s) 74, 278, 290, 450, 555, 570, 677, 737, 809
FatI CATG 6 cut(s) 72, 276, 568, 675, 735, 807
FauI CCCGC 4 cut(s) 95, 384, 478, 1064
FriOI GRGCYC 3 cut(s) 72, 553, 1044
FspBI CTAG 1 cut(s) 1025
GlaI GCGC 1 cut(s) 1052
GsuI CTGGAG 2 cut(s) 115, 406
HaeIII GGCC 7 cut(s) 29, 49, 144, 200, 348, 734, 863
HgaI GACGC 3 cut(s) 88, 224, 820
HhaI GCGC 1 cut(s) 1053
Hin1I GRCGYC 2 cut(s) 216, 405
Hin1II CATG 6 cut(s) 76, 280, 572, 679, 739, 811
Hin6I GCGC 1 cut(s) 1051
HinP1I GCGC 1 cut(s) 1051
HinfI GANTC 1 cut(s) 58
HphI GGTGA 2 cut(s) 422, 986
Hpy166II GTNNAC 1 cut(s) 977
Hpy188I TCNGA 3 cut(s) 172, 259, 394
Hpy188III TCNNGA 6 cut(s) 110, 188, 645, 808, 883, 1045
Hpy8I GTNNAC 1 cut(s) 977
HpyAV CCTTC 5 cut(s) 399, 508, 767, 853, 868
HpyCH4III ACNGT 6 cut(s) 297, 341, 359, 478, 499, 962
HpyCH4IV ACGT 2 cut(s) 405, 698
HpyCH4V TGCA 5 cut(s) 560, 830, 848, 1011, 1075
HpyF3I CTNAG 4 cut(s) 267, 729, 987, 1000
HpySE526I ACGT 2 cut(s) 405, 698
Hsp92I GRCGYC 2 cut(s) 216, 405
Hsp92II CATG 6 cut(s) 76, 280, 572, 679, 739, 811
HspAI GCGC 1 cut(s) 1051
KroI GCCGGC 1 cut(s) 200
KroNI GCCGGC 1 cut(s) 202
LmnI GCTCC 9 cut(s) 95, 96, 136, 280, 425, 570, 751, 779, 1047
Lsp1109I GCAGC 8 cut(s) 469, 559, 604, 641, 679, 694, 814, 860
MaeI CTAG 1 cut(s) 1025
MaeII ACGT 2 cut(s) 405, 698
MaeIII GTNAC 3 cut(s) 291, 472, 1081
MbiI CCGCTC 2 cut(s) 90, 107
MboII GAAGA 5 cut(s) 34, 246, 541, 544, 1082
MhlI GDGCHC 4 cut(s) 72, 553, 756, 1044
MluCI AATT 4 cut(s) 952, 994, 1019, 1067
MlyI GAGTC 1 cut(s) 52
MmeI TCCRAC 1 cut(s) 189
MroNI GCCGGC 1 cut(s) 200
MseI TTAA 1 cut(s) 365
MslI CAYNNNNRTG 1 cut(s) 342
MspR9I CCNGG 7 cut(s) 26, 53, 94, 589, 640, 799, 865
Mva1269I GAATGC 1 cut(s) 925
MvaI CCWGG 2 cut(s) 94, 865
NaeI GCCGGC 1 cut(s) 202
NciI CCSGG 5 cut(s) 26, 53, 589, 640, 799
NcoI CCATGG 2 cut(s) 72, 735
NgoMIV GCCGGC 1 cut(s) 200
NlaIII CATG 6 cut(s) 76, 280, 572, 679, 739, 811
NlaIV GGNNCC 3 cut(s) 50, 132, 361
NmuCI GTSAC 1 cut(s) 291
OliI CACNNNNGTG 1 cut(s) 342
PagI TCATGA 1 cut(s) 807
PcsI WCGNNNNNNNCGW 2 cut(s) 222, 255
PctI GAATGC 1 cut(s) 925
PdiI GCCGGC 1 cut(s) 202
PfoI TCCNGGA 1 cut(s) 92
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
Psp124BI GAGCTC 1 cut(s) 1044
Psp6I CCWGG 2 cut(s) 92, 863
PspGI CCWGG 2 cut(s) 92, 863
PspN4I GGNNCC 3 cut(s) 50, 132, 361
PspPI GGNCC 3 cut(s) 28, 48, 347
RseI CAYNNNNRTG 1 cut(s) 342
SacI GAGCTC 1 cut(s) 1044
SaqAI TTAA 1 cut(s) 365
Sau96I GGNCC 3 cut(s) 28, 48, 347
SchI GAGTC 1 cut(s) 52
ScrFI CCNGG 7 cut(s) 26, 53, 94, 589, 640, 799, 865
SduI GDGCHC 4 cut(s) 72, 553, 756, 1044
SfcI CTRYAG 1 cut(s) 924
SmiMI CAYNNNNRTG 1 cut(s) 342
Sse9I AATT 4 cut(s) 952, 994, 1019, 1067
SspMI CTAG 1 cut(s) 1025
SstI GAGCTC 1 cut(s) 1044
StyD4I CCNGG 7 cut(s) 24, 51, 92, 587, 638, 797, 863
StyI CCWWGG 4 cut(s) 72, 126, 139, 735
TaaI ACNGT 6 cut(s) 297, 341, 359, 478, 499, 962
TaiI ACGT 2 cut(s) 408, 701
TaqI TCGA 1 cut(s) 111
TaqII GACCGA 1 cut(s) 20
TasI AATT 4 cut(s) 952, 994, 1019, 1067
TauI GCSGC 7 cut(s) 221, 224, 458, 611, 623, 728, 896
Tru1I TTAA 1 cut(s) 365
Tru9I TTAA 1 cut(s) 365
TscAI CASTG 2 cut(s) 17, 976
TseFI GTSAC 1 cut(s) 291
TseI GCWGC 8 cut(s) 482, 572, 617, 629, 692, 707, 827, 848
Tsp45I GTSAC 1 cut(s) 291
TspRI CASTG 2 cut(s) 17, 976
XapI RAATTY 2 cut(s) 994, 1067
XspI CTAG 1 cut(s) 1025
ZraI GACGTC 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.