Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004295

Physical Location & Seq

Genomic Coordinates Forward (+)

33213558 .. 33214115

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0311300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGATGTTCCAGCAAGTTACTGCAACTAGTGTTTATGCTTGGGCACCATCATCTGGTGTACTTCCACATGATGATCTAGAAGTTAACAATGTTGCAGTTCTGTTAGATAGCAATGATAACTTGGCCTGTCCCATTAAGGTCATTGCAGGTTCTTTGGGTAAGAGGAAAATGACACCAACAAACCAGGTTAATGCAGGTACTGAGAAAAATAATAAAGGCAAAGGTACAGGATCAAGAAAGATGGGAGGTGCAGCCAAGTTATCACTACAGATTGATCGGATGGTGGAATCAATTCAAAATAGGAGCATTGTGACTTTAGTAGTGAATAAAGGTGTGTTGGGGACTTCTATTGCTGAAGTGATGAAATTAGTTTCATCTTTACCTGGGGAAGAGCCAGGTAGTCCTTGTGGTTTTTTGCAACTCAGTTGTTTCTCAGTCAAGAAAAGAAAGAGATGTTTGTCACCACAGAAGAGACAGATATCAAGATTCAGTGGCTTTATTATGAAATGGGAACTGGTGGCAAATAAGATGACTAAGAAGCTACTAGGAAGAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_canalis PH_2

Protein Analysis

185

Amino Acids

20.05

Weight (kDa)

10.07

Isoelectric Point (pI)

49.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22810 AT3G22810 AT3G22810 AT4G14740 AT4G14740 AT4G14740 AT4G14740 AT5G43870 AT5G43870
fragaria_vesca	FvH4_4g01030 FvH4_4g01030 FvH4_4g01030 FvH4_4g01030
malus_domestica	MD13G1198600.v1.1 MD16G1198700.v1.1
prunus_persica	Prupe.1G020300_v2.0.a1 Prupe.1G020300_v2.0.a1
pyrus_communis	pycom13g17240 pycom16g16750
rosa_chinensis	RchiOBHm_Chr4g0387611
rosa_laevigata	RLG00000010107
rosa_multiflora	Rmu_sc0003953.1_g000004 Rmu_sc0012183.1_g000002
rosa_roxburghii	Rroxscaffold_5G00334290
rosa_rugosa	Rorug03G0311200 Rorug03G0311300 Rorug03G0311400
rosa_samantha	Rh4AG017100 Rh4BG011900 Rh4CG018300 Rh4DG012900
rosa_wichuraiana	Rw4G001090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	137, 185
AccB1I	GGYRCC	1 cut(s)	43
AccB7I	CCANNNNNTGG	1 cut(s)	53
AclWI	GGATC	1 cut(s)	238
AcuI	CTGAAG	1 cut(s)	375
AfaI	GTAC	3 cut(s)	60, 199, 226
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgsI	TTSAA	1 cut(s)	296
AhlI	ACTAGT	1 cut(s)	26
AjnI	CCWGG	3 cut(s)	183, 382, 394
AluBI	AGCT	1 cut(s)	541
AluI	AGCT	1 cut(s)	541
Alw26I	GTCTC	1 cut(s)	466
AlwI	GGATC	1 cut(s)	238
AlwNI	CAGNNNCTG	1 cut(s)	200
AoxI	GGCC	1 cut(s)	123
ApeKI	GCWGC	1 cut(s)	251
Asp700I	GAANNNNTTC	1 cut(s)	291
AsuHPI	GGTGA	1 cut(s)	453
BaeGI	GKGCMC	1 cut(s)	46
BanI	GGYRCC	1 cut(s)	43
BbvI	GCAGC	1 cut(s)	263
BccI	CCATC	3 cut(s)	55, 235, 274
BciT130I	CCWGG	3 cut(s)	185, 384, 396
BcoDI	GTCTC	1 cut(s)	466
BcuI	ACTAGT	1 cut(s)	26
BfaI	CTAG	4 cut(s)	27, 77, 545, 556
BfmI	CTRYAG	1 cut(s)	266
BfuAI	ACCTGC	2 cut(s)	137, 185
BisI	GCNGC	1 cut(s)	252
BlsI	GCNGC	1 cut(s)	253
Bme1390I	CCNGG	3 cut(s)	185, 384, 396
BmiI	GGNNCC	1 cut(s)	45
BmrFI	CCNGG	3 cut(s)	185, 384, 396
BsaJI	CCNNGG	1 cut(s)	383
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	519
Bse3DI	GCAATG	2 cut(s)	118, 141
BseBI	CCWGG	3 cut(s)	185, 384, 396
BseDI	CCNNGG	1 cut(s)	383
BseGI	GGATG	1 cut(s)	285
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMI	GCAATG	2 cut(s)	118, 141
BseMII	CTCAG	3 cut(s)	192, 436, 447
BseNI	ACTGG	1 cut(s)	519
BseSI	GKGCMC	1 cut(s)	46
BseXI	GCAGC	1 cut(s)	263
BsgI	GTGCAG	1 cut(s)	270
BshFI	GGCC	1 cut(s)	125
BshNI	GGYRCC	1 cut(s)	43
BslFI	GGGAC	2 cut(s)	114, 355
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmAI	GTCTC	1 cut(s)	466
BsmFI	GGGAC	2 cut(s)	114, 355
BsnI	GGCC	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp143I	GATC	3 cut(s)	73, 230, 274
BspANI	GGCC	1 cut(s)	125
BspCNI	CTCAG	3 cut(s)	193, 435, 446
BspLI	GGNNCC	1 cut(s)	45
BspMI	ACCTGC	2 cut(s)	137, 185
BspPI	GGATC	1 cut(s)	238
BspQI	GCTCTTC	1 cut(s)	384
BspT107I	GGYRCC	1 cut(s)	43
BsrDI	GCAATG	2 cut(s)	118, 141
BsrI	ACTGG	1 cut(s)	519
BssECI	CCNNGG	1 cut(s)	383
BssMI	GATC	3 cut(s)	73, 230, 274
Bst2UI	CCWGG	3 cut(s)	185, 384, 396
Bst6I	CTCTTC	2 cut(s)	384, 464
BstDEI	CTNAG	4 cut(s)	201, 422, 433, 534
BstF5I	GGATG	1 cut(s)	285
BstKTI	GATC	3 cut(s)	76, 233, 277
BstMAI	GTCTC	1 cut(s)	466
BstMBI	GATC	3 cut(s)	73, 230, 274
BstNI	CCWGG	3 cut(s)	185, 384, 396
BstSCI	CCNGG	3 cut(s)	183, 382, 394
BstSFI	CTRYAG	1 cut(s)	266
BstSLI	GKGCMC	1 cut(s)	46
BstV1I	GCAGC	1 cut(s)	263
BsuRI	GGCC	1 cut(s)	125
BtsCI	GGATG	1 cut(s)	285
BtsIMutI	CAGTG	1 cut(s)	496
BveI	ACCTGC	2 cut(s)	137, 185
CaiI	CAGNNNCTG	1 cut(s)	200
CsiI	ACCWGGT	1 cut(s)	183
Csp6I	GTAC	3 cut(s)	59, 198, 225
CviAII	CATG	1 cut(s)	68
CviJI	RGCY	5 cut(s)	125, 254, 394, 495, 541
CviKI_1	RGCY	5 cut(s)	125, 254, 394, 495, 541
CviQI	GTAC	3 cut(s)	59, 198, 225
DdeI	CTNAG	4 cut(s)	201, 422, 433, 534
DpnI	GATC	3 cut(s)	75, 232, 276
DpnII	GATC	3 cut(s)	73, 230, 274
Eam1104I	CTCTTC	2 cut(s)	384, 464
EarI	CTCTTC	2 cut(s)	384, 464
Eco32I	GATATC	1 cut(s)	480
Eco57I	CTGAAG	1 cut(s)	375
EcoRII	CCWGG	3 cut(s)	183, 382, 394
EcoRV	GATATC	1 cut(s)	480
FaeI	CATG	1 cut(s)	71
FaiI	YATR	3 cut(s)	36, 69, 503
FaqI	GGGAC	2 cut(s)	114, 355
FatI	CATG	1 cut(s)	67
Fnu4HI	GCNGC	1 cut(s)	252
FokI	GGATG	1 cut(s)	292
Fsp4HI	GCNGC	1 cut(s)	252
FspBI	CTAG	4 cut(s)	27, 77, 545, 556
GluI	GCNGC	1 cut(s)	252
HaeIII	GGCC	1 cut(s)	125
Hin1II	CATG	1 cut(s)	71
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	2 cut(s)	287, 486
HpaI	GTTAAC	1 cut(s)	85
HphI	GGTGA	1 cut(s)	453
Hpy166II	GTNNAC	2 cut(s)	59, 85
Hpy188I	TCNGA	1 cut(s)	279
Hpy188III	TCNNGA	4 cut(s)	77, 234, 439, 483
Hpy8I	GTNNAC	2 cut(s)	59, 85
HpyCH4V	TGCA	6 cut(s)	23, 95, 146, 194, 251, 418
HpyF3I	CTNAG	4 cut(s)	201, 422, 433, 534
Hsp92II	CATG	1 cut(s)	71
KspAI	GTTAAC	1 cut(s)	85
Kzo9I	GATC	3 cut(s)	73, 230, 274
LguI	GCTCTTC	1 cut(s)	384
LmnI	GCTCC	1 cut(s)	303
Lsp1109I	GCAGC	1 cut(s)	263
MabI	ACCWGGT	1 cut(s)	183
MaeI	CTAG	4 cut(s)	27, 77, 545, 556
MaeIII	GTNAC	3 cut(s)	16, 310, 459
MalI	GATC	3 cut(s)	75, 232, 276
MboI	GATC	3 cut(s)	73, 230, 274
MboII	GAAGA	2 cut(s)	401, 481
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	2 cut(s)	291, 365
MnlI	CCTC	2 cut(s)	156, 239
MroXI	GAANNNNTTC	1 cut(s)	291
MseI	TTAA	3 cut(s)	84, 135, 189
MspR9I	CCNGG	3 cut(s)	185, 384, 396
MvaI	CCWGG	3 cut(s)	185, 384, 396
NdeII	GATC	3 cut(s)	73, 230, 274
NlaIII	CATG	1 cut(s)	71
NlaIV	GGNNCC	1 cut(s)	45
NmuCI	GTSAC	2 cut(s)	310, 459
PciSI	GCTCTTC	1 cut(s)	384
PdmI	GAANNNNTTC	1 cut(s)	291
PfeI	GAWTC	2 cut(s)	287, 486
PflMI	CCANNNNNTGG	1 cut(s)	53
PkrI	GCNGC	1 cut(s)	253
Psp6I	CCWGG	3 cut(s)	183, 382, 394
PspGI	CCWGG	3 cut(s)	183, 382, 394
PspN4I	GGNNCC	1 cut(s)	45
PstNI	CAGNNNCTG	1 cut(s)	200
RsaI	GTAC	3 cut(s)	60, 199, 226
RsaNI	GTAC	3 cut(s)	59, 198, 225
SapI	GCTCTTC	1 cut(s)	384
SaqAI	TTAA	3 cut(s)	84, 135, 189
SatI	GCNGC	1 cut(s)	252
Sau3AI	GATC	3 cut(s)	73, 230, 274
ScrFI	CCNGG	3 cut(s)	185, 384, 396
SduI	GDGCHC	1 cut(s)	46
SexAI	ACCWGGT	1 cut(s)	183
SfcI	CTRYAG	1 cut(s)	266
SpeI	ACTAGT	1 cut(s)	26
Sse9I	AATT	2 cut(s)	291, 365
SspMI	CTAG	4 cut(s)	27, 77, 545, 556
StyD4I	CCNGG	3 cut(s)	183, 382, 394
TasI	AATT	2 cut(s)	291, 365
TatI	WGTACW	1 cut(s)	58
TfiI	GAWTC	2 cut(s)	287, 486
Tru1I	TTAA	3 cut(s)	84, 135, 189
Tru9I	TTAA	3 cut(s)	84, 135, 189
TscAI	CASTG	1 cut(s)	496
TseFI	GTSAC	2 cut(s)	310, 459
TseI	GCWGC	1 cut(s)	251
Tsp45I	GTSAC	2 cut(s)	310, 459
TspDTI	ATGAA	3 cut(s)	363, 377, 518
TspRI	CASTG	1 cut(s)	496
Van91I	CCANNNNNTGG	1 cut(s)	53
XbaI	TCTAGA	1 cut(s)	76
XmnI	GAANNNNTTC	1 cut(s)	291
XspI	CTAG	4 cut(s)	27, 77, 545, 556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.