Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0004295

Physical Location & Seq

Genomic Coordinates Forward (+)

3690598 .. 3694713

Gene Structure 4116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG018300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGACCCCCATAACCAGAAGTGGTATTGTCGCTCCAGCAACCACCACCTCAACAACCAATATAGAGCCGCCACGAACGGCGGAGTTACGGTGGCTGCGGGCGGTAAGACGGTGGGGAGGTGGCTGAAGGATAGGAGGGAGAAGAAGAAAGAGGAGGCGAGGGCTCACAATGCACAGCTCCATGCTGCTGTGTCTGTCGCCGGGGTGGCTTCTGCCATTGCCGCCATTGCTGCCGCCACGGCAGCTACTTCCGGGTCTGGAAAAGACGAGCAGATGGCTAAAACCGACATGGCAGTGGCCTCTGCTGCCACGTTGGTAGCTGCTCAATGTGTGGAGGCGGCTGAGGCCATGGGTGCTGAAAGGGAGCACCTTCACTCGGTTGTTAGCTCCGCCGTGAATGTCAGGTCTGCCGGGGATATCATGACGCTGACCGCCGGTGCTGCAACAGCATTGCGTGGTGCAGCAACATTAAAGGCCAGGGCGTTGAAGGAAGTCTGGAACATTGCGGCGGTTATTCCTGTTGAAAAAGGGAATGCTGTAGCTGGAAATGGAGGCAGTAATGGTAATTCTAACAGTAGCTTCAGTGGTGAACTTGTTCCTGAGGAGAATTTCTTAGGCATTTGCAATAGAGAATTACTAGCCAAAGGTTGTGAGCTCCTGAAGCGCACCCGCAAAGGAGATCTTCATTGGAAAATTGTTTCTGTTTATATCAACAGGAGCAGTCAGGTTATGCTGAAGATGAAGAGCAGGCATGTTGCTGGGACCATCACCAAAAAGAAAAAGAATGTGGTGCTGGAGGTGATTACAGATATGCCCGCCTGGCCAGGTCGCCACCTTCTCGAGGGCGGGGAGCACAGACGTTACTTTGGTCTGAAGACTGTTTTGCGTGGGGTGGTGGAGTTTGAGTGCCGGAGCCAAAGGGAGTACGACATTTGGACTCAGGGTGTCTCAAGGCTAATCTCCATTGCTGCAGAAAAGAGGAACAATAGGCATAGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_canalis PH_2

Protein Analysis

333

Amino Acids

35.89

Weight (kDa)

9.9

Isoelectric Point (pI)

31.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_canalis	PF05703	7 - 177	5.5e-78	Auxin canalisation
PH_2	PF08458	218 - 322	1.6e-43	Plant pleckstrin homology-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22810 AT3G22810 AT3G22810 AT4G14740 AT4G14740 AT4G14740 AT4G14740 AT5G43870 AT5G43870
fragaria_vesca	FvH4_4g01030 FvH4_4g01030 FvH4_4g01030 FvH4_4g01030
malus_domestica	MD13G1198600.v1.1 MD16G1198700.v1.1
prunus_persica	Prupe.1G020300_v2.0.a1 Prupe.1G020300_v2.0.a1
pyrus_communis	pycom13g17240 pycom16g16750
rosa_chinensis	RchiOBHm_Chr4g0387611
rosa_laevigata	RLG00000010107
rosa_multiflora	Rmu_sc0003953.1_g000004 Rmu_sc0012183.1_g000002
rosa_roxburghii	Rroxscaffold_5G00334290
rosa_rugosa	Rorug03G0311200 Rorug03G0311300 Rorug03G0311400
rosa_samantha	Rh4AG017100 Rh4BG011900 Rh4CG018300 Rh4DG012900
rosa_wichuraiana	Rw4G001090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	821
AcsI	RAATTY	1 cut(s)	607
AcuI	CTGAAG	5 cut(s)	146, 565, 680, 755, 893
AfaI	GTAC	1 cut(s)	926
AfiI	CCNNNNNNNGG	2 cut(s)	376, 841
AgsI	TTSAA	2 cut(s)	487, 524
AjnI	CCWGG	3 cut(s)	476, 818, 823
AluBI	AGCT	7 cut(s)	178, 245, 320, 387, 542, 579, 655
AluI	AGCT	7 cut(s)	178, 245, 320, 387, 542, 579, 655
Alw21I	GWGCWC	3 cut(s)	369, 657, 855
Alw26I	GTCTC	1 cut(s)	952
Ama87I	CYCGRG	1 cut(s)	839
AoxI	GGCC	4 cut(s)	297, 345, 474, 821
ApeKI	GCWGC	9 cut(s)	95, 185, 230, 242, 305, 320, 440, 461, 968
ApoI	RAATTY	1 cut(s)	607
Asp700I	GAANNNNTTC	1 cut(s)	594
AspLEI	GCGC	1 cut(s)	666
AspS9I	GGNCC	2 cut(s)	4, 762
AsuC2I	CCSGG	3 cut(s)	202, 253, 412
AsuHPI	GGTGA	3 cut(s)	599, 760, 811
AvaI	CYCGRG	1 cut(s)	839
AvaII	GGWCC	2 cut(s)	4, 762
AxyI	CCTNAGG	1 cut(s)	600
BalI	TGGCCA	1 cut(s)	823
BanII	GRGCYC	2 cut(s)	166, 657
BbsI	GAAGAC	1 cut(s)	881
Bbv12I	GWGCWC	3 cut(s)	369, 657, 855
BbvCI	CCTCAGC	1 cut(s)	342
BbvI	GCAGC	9 cut(s)	82, 172, 217, 254, 292, 307, 427, 473, 955
BccI	CCATC	2 cut(s)	268, 773
BceAI	ACGGC	3 cut(s)	94, 255, 377
BciT130I	CCWGG	3 cut(s)	478, 820, 825
BcnI	CCSGG	3 cut(s)	202, 253, 412
BcoDI	GTCTC	1 cut(s)	952
BfaI	CTAG	1 cut(s)	638
BfmI	CTRYAG	2 cut(s)	537, 969
BglI	GCCNNNNNGGC	3 cut(s)	206, 239, 820
BglII	AGATCT	1 cut(s)	679
Bme1390I	CCNGG	6 cut(s)	202, 253, 412, 478, 820, 825
Bme18I	GGWCC	2 cut(s)	4, 762
BmeT110I	CYCGRG	1 cut(s)	839
BmgT120I	GGNCC	2 cut(s)	4, 762
BmiI	GGNNCC	3 cut(s)	6, 763, 914
BmrFI	CCNGG	6 cut(s)	202, 253, 412, 478, 820, 825
BpiI	GAAGAC	1 cut(s)	881
BpmI	CTGGAG	2 cut(s)	19, 815
Bpu10I	CCTNAGC	1 cut(s)	342
BpuEI	CTTGAG	1 cut(s)	934
BpuMI	CCSGG	3 cut(s)	202, 253, 412
BsaJI	CCNNGG	5 cut(s)	201, 237, 348, 411, 477
BsaXI	ACNNNNNCTCC	4 cut(s)	75, 105, 890, 920
Bsc4I	CCNNNNNNNGG	2 cut(s)	376, 841
Bse118I	RCCGGY	1 cut(s)	434
Bse21I	CCTNAGG	1 cut(s)	600
Bse3DI	GCAATG	5 cut(s)	216, 225, 449, 501, 963
BseBI	CCWGG	3 cut(s)	478, 820, 825
BseDI	CCNNGG	5 cut(s)	201, 237, 348, 411, 477
BseLI	CCNNNNNNNGG	2 cut(s)	376, 841
BseMI	GCAATG	5 cut(s)	216, 225, 449, 501, 963
BseMII	CTCAG	3 cut(s)	333, 591, 953
BseRI	GAGGAG	2 cut(s)	167, 617
BseXI	GCAGC	9 cut(s)	82, 172, 217, 254, 292, 307, 427, 473, 955
BseYI	CCCAGC	1 cut(s)	758
BsgI	GTGCAG	1 cut(s)	480
BshFI	GGCC	4 cut(s)	299, 347, 476, 823
BsiHKAI	GWGCWC	3 cut(s)	369, 657, 855
BsiHKCI	CYCGRG	1 cut(s)	839
BsiSI	CCGG	5 cut(s)	201, 252, 411, 435, 910
BslFI	GGGAC	1 cut(s)	775
BslI	CCNNNNNNNGG	2 cut(s)	376, 841
BsmAI	GTCTC	1 cut(s)	952
BsmFI	GGGAC	1 cut(s)	775
BsmI	GAATGC	1 cut(s)	538
BsnI	GGCC	4 cut(s)	299, 347, 476, 823
BsoBI	CYCGRG	1 cut(s)	839
Bsp1286I	GDGCHC	4 cut(s)	166, 369, 657, 855
Bsp143I	GATC	1 cut(s)	679
Bsp19I	CCATGG	1 cut(s)	348
BspANI	GGCC	4 cut(s)	299, 347, 476, 823
BspCNI	CTCAG	3 cut(s)	334, 592, 952
BspHI	TCATGA	1 cut(s)	420
BspLI	GGNNCC	3 cut(s)	6, 763, 914
BspMAI	CTGCAG	1 cut(s)	973
BspQI	GCTCTTC	1 cut(s)	737
BsrDI	GCAATG	5 cut(s)	216, 225, 449, 501, 963
BsrFI	RCCGGY	1 cut(s)	434
BssAI	RCCGGY	1 cut(s)	434
BssECI	CCNNGG	5 cut(s)	201, 237, 348, 411, 477
BssMI	GATC	1 cut(s)	679
BssT1I	CCWWGG	1 cut(s)	348
Bst2UI	CCWGG	3 cut(s)	478, 820, 825
Bst4CI	ACNGT	4 cut(s)	91, 112, 575, 880
Bst6I	CTCTTC	1 cut(s)	737
BstC8I	GCNNGC	3 cut(s)	100, 749, 816
BstDEI	CTNAG	4 cut(s)	342, 600, 613, 939
BstDSI	CCRYGG	2 cut(s)	237, 348
BstENI	CCTNNNNNAGG	1 cut(s)	839
BstHHI	GCGC	1 cut(s)	666
BstKTI	GATC	1 cut(s)	682
BstMAI	GTCTC	1 cut(s)	952
BstMBI	GATC	1 cut(s)	679
BstNI	CCWGG	3 cut(s)	478, 820, 825
BstNSI	RCATGY	1 cut(s)	755
BstSCI	CCNGG	6 cut(s)	200, 251, 410, 476, 818, 823
BstSFI	CTRYAG	2 cut(s)	537, 969
BstV1I	GCAGC	9 cut(s)	82, 172, 217, 254, 292, 307, 427, 473, 955
BstV2I	GAAGAC	1 cut(s)	881
BstX2I	RGATCY	1 cut(s)	679
BstYI	RGATCY	1 cut(s)	679
Bsu36I	CCTNAGG	1 cut(s)	600
BsuRI	GGCC	4 cut(s)	299, 347, 476, 823
BtgI	CCRYGG	2 cut(s)	237, 348
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	2 cut(s)	300, 589
Cac8I	GCNNGC	3 cut(s)	100, 749, 816
CciI	TCATGA	1 cut(s)	420
CfoI	GCGC	1 cut(s)	666
Cfr10I	RCCGGY	1 cut(s)	434
Cfr13I	GGNCC	2 cut(s)	4, 762
CseI	GACGC	1 cut(s)	433
Csp6I	GTAC	1 cut(s)	925
CviAII	CATG	5 cut(s)	182, 289, 349, 421, 752
CviQI	GTAC	1 cut(s)	925
DdeI	CTNAG	4 cut(s)	342, 600, 613, 939
DpnI	GATC	1 cut(s)	681
DpnII	GATC	1 cut(s)	679
EaeI	YGGCCR	1 cut(s)	821
Eam1104I	CTCTTC	1 cut(s)	737
EarI	CTCTTC	1 cut(s)	737
EciI	GGCGGA	2 cut(s)	96, 379
Ecl136II	GAGCTC	1 cut(s)	655
Eco130I	CCWWGG	1 cut(s)	348
Eco24I	GRGCYC	2 cut(s)	166, 657
Eco32I	GATATC	1 cut(s)	418
Eco47I	GGWCC	2 cut(s)	4, 762
Eco53kI	GAGCTC	1 cut(s)	655
Eco57I	CTGAAG	5 cut(s)	146, 565, 680, 755, 893
Eco81I	CCTNAGG	1 cut(s)	600
Eco88I	CYCGRG	1 cut(s)	839
EcoICRI	GAGCTC	1 cut(s)	655
EcoNI	CCTNNNNNAGG	1 cut(s)	839
EcoRII	CCWGG	3 cut(s)	476, 818, 823
EcoRV	GATATC	1 cut(s)	418
EcoT14I	CCWWGG	1 cut(s)	348
EcoT38I	GRGCYC	2 cut(s)	166, 657
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	5 cut(s)	185, 292, 352, 424, 755
FalI	AAGNNNNNCTT	2 cut(s)	666, 698
FaqI	GGGAC	1 cut(s)	775
FatI	CATG	5 cut(s)	181, 288, 348, 420, 751
FauI	CCCGC	4 cut(s)	91, 677, 823, 839
FriOI	GRGCYC	2 cut(s)	166, 657
FspBI	CTAG	1 cut(s)	638
GlaI	GCGC	1 cut(s)	665
GsaI	CCCAGC	1 cut(s)	762
GsuI	CTGGAG	2 cut(s)	19, 815
HaeIII	GGCC	4 cut(s)	299, 347, 476, 823
HapII	CCGG	5 cut(s)	201, 252, 411, 435, 910
HgaI	GACGC	1 cut(s)	433
HhaI	GCGC	1 cut(s)	666
Hin1II	CATG	5 cut(s)	185, 292, 352, 424, 755
Hin6I	GCGC	1 cut(s)	664
HinP1I	GCGC	1 cut(s)	664
HinfI	GANTC	1 cut(s)	937
HpaII	CCGG	5 cut(s)	201, 252, 411, 435, 910
HphI	GGTGA	3 cut(s)	599, 760, 811
Hpy166II	GTNNAC	1 cut(s)	590
Hpy188I	TCNGA	1 cut(s)	873
Hpy188III	TCNNGA	6 cut(s)	258, 421, 496, 599, 658, 839
Hpy8I	GTNNAC	1 cut(s)	590
HpyAV	CCTTC	4 cut(s)	121, 380, 481, 845
HpyCH4III	ACNGT	4 cut(s)	91, 112, 575, 880
HpyCH4IV	ACGT	2 cut(s)	311, 859
HpyCH4V	TGCA	5 cut(s)	173, 443, 461, 624, 971
HpyF3I	CTNAG	4 cut(s)	342, 600, 613, 939
HpySE526I	ACGT	2 cut(s)	311, 859
Hsp92II	CATG	5 cut(s)	185, 292, 352, 424, 755
HspAI	GCGC	1 cut(s)	664
Kzo9I	GATC	1 cut(s)	679
LguI	GCTCTTC	1 cut(s)	737
LmnI	GCTCC	8 cut(s)	38, 183, 364, 392, 660, 717, 850, 912
Lsp1109I	GCAGC	9 cut(s)	82, 172, 217, 254, 292, 307, 427, 473, 955
MaeI	CTAG	1 cut(s)	638
MaeII	ACGT	2 cut(s)	311, 859
MaeIII	GTNAC	2 cut(s)	85, 860
MalI	GATC	1 cut(s)	681
MboI	GATC	1 cut(s)	679
MboII	GAAGA	6 cut(s)	154, 157, 674, 748, 754, 886
MflI	RGATCY	1 cut(s)	679
MhlI	GDGCHC	4 cut(s)	166, 369, 657, 855
MlsI	TGGCCA	1 cut(s)	823
MluCI	AATT	4 cut(s)	565, 607, 632, 693
MluNI	TGGCCA	1 cut(s)	823
MlyI	GAGTC	1 cut(s)	931
Mox20I	TGGCCA	1 cut(s)	823
MroXI	GAANNNNTTC	1 cut(s)	594
MscI	TGGCCA	1 cut(s)	823
MseI	TTAA	1 cut(s)	470
MslI	CAYNNNNRTG	1 cut(s)	293
Msp20I	TGGCCA	1 cut(s)	823
MspI	CCGG	5 cut(s)	201, 252, 411, 435, 910
MspR9I	CCNGG	6 cut(s)	202, 253, 412, 478, 820, 825
Mva1269I	GAATGC	1 cut(s)	538
MvaI	CCWGG	3 cut(s)	478, 820, 825
NciI	CCSGG	3 cut(s)	202, 253, 412
NcoI	CCATGG	1 cut(s)	348
NdeII	GATC	1 cut(s)	679
NlaIII	CATG	5 cut(s)	185, 292, 352, 424, 755
NlaIV	GGNNCC	3 cut(s)	6, 763, 914
NspI	RCATGY	1 cut(s)	755
PaeR7I	CTCGAG	1 cut(s)	839
PagI	TCATGA	1 cut(s)	420
PciSI	GCTCTTC	1 cut(s)	737
PctI	GAATGC	1 cut(s)	538
PdmI	GAANNNNTTC	1 cut(s)	594
PleI	GAGTC	1 cut(s)	931
PpsI	GAGTC	1 cut(s)	931
Psp124BI	GAGCTC	1 cut(s)	657
Psp6I	CCWGG	3 cut(s)	476, 818, 823
PspFI	CCCAGC	1 cut(s)	758
PspGI	CCWGG	3 cut(s)	476, 818, 823
PspN4I	GGNNCC	3 cut(s)	6, 763, 914
PspPI	GGNCC	2 cut(s)	4, 762
PstI	CTGCAG	1 cut(s)	973
PsuI	RGATCY	1 cut(s)	679
RsaI	GTAC	1 cut(s)	926
RsaNI	GTAC	1 cut(s)	925
RseI	CAYNNNNRTG	1 cut(s)	293
SacI	GAGCTC	1 cut(s)	657
SapI	GCTCTTC	1 cut(s)	737
SaqAI	TTAA	1 cut(s)	470
Sau3AI	GATC	1 cut(s)	679
Sau96I	GGNCC	2 cut(s)	4, 762
SchI	GAGTC	1 cut(s)	931
ScrFI	CCNGG	6 cut(s)	202, 253, 412, 478, 820, 825
SduI	GDGCHC	4 cut(s)	166, 369, 657, 855
SfcI	CTRYAG	2 cut(s)	537, 969
Sfr274I	CTCGAG	1 cut(s)	839
SgrAI	CRCCGGYG	1 cut(s)	434
SinI	GGWCC	2 cut(s)	4, 762
SlaI	CTCGAG	1 cut(s)	839
SmiMI	CAYNNNNRTG	1 cut(s)	293
SmlI	CTYRAG	2 cut(s)	839, 949
SmoI	CTYRAG	2 cut(s)	839, 949
Sse9I	AATT	4 cut(s)	565, 607, 632, 693
SspMI	CTAG	1 cut(s)	638
SstI	GAGCTC	1 cut(s)	657
StyD4I	CCNGG	6 cut(s)	200, 251, 410, 476, 818, 823
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	4 cut(s)	91, 112, 575, 880
TaiI	ACGT	2 cut(s)	314, 862
TaqI	TCGA	1 cut(s)	840
TasI	AATT	4 cut(s)	565, 607, 632, 693
TauI	GCSGC	5 cut(s)	71, 224, 236, 341, 509
Tru1I	TTAA	1 cut(s)	470
Tru9I	TTAA	1 cut(s)	470
TscAI	CASTG	2 cut(s)	300, 589
TseI	GCWGC	9 cut(s)	95, 185, 230, 242, 305, 320, 440, 461, 968
TspDTI	ATGAA	2 cut(s)	674, 755
TspRI	CASTG	2 cut(s)	300, 589
VpaK11BI	GGWCC	2 cut(s)	4, 762
XagI	CCTNNNNNAGG	1 cut(s)	839
XapI	RAATTY	1 cut(s)	607
XceI	RCATGY	1 cut(s)	755
XhoI	CTCGAG	1 cut(s)	839
XmnI	GAANNNNTTC	1 cut(s)	594
XspI	CTAG	1 cut(s)	638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.