Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003953.1

Orthogroup ID

OG0004295

Physical Location & Seq

Genomic Coordinates Forward (+)

20989 .. 22874

Gene Structure 1886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003953.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

atgaccgagcagtggcgacccgacccggcccactcctccctcttccgtcccccggagactccccgtgagcccatggagttcctctcccgctcctggagcgtctccgctctcgaagtctccaaagccttggctcctccccagggccaactctccaagctcaacctcaactctgacgccaccgctattcccgaggacttggccggcgagttggaggacgccgccgccgtctccggaaacccattttcgttcgcttcttccgagacttctcagctcgtcatggagcctgctcaatgtgtggaggcggctgaggccatgggtgctgaaagggagcaccttcactcggttgttagctccgccgtgaatgtcaggtctgccggggatatcatgacgctgaccgccggtgccgcaacagcattgcgtggtgcagcaacattaaaggccagggcgttgaaggaagtctggaacattgcggcggttattcctgttgaaaaagggaatgctgtagctggaaatggaggcagtaatggtaattctaacagtagcttcagtggtgaacttgttcctgaggagaatttcttaggcatttgcaatagagaattactagccaaaggttgtgagctcctgaagcgcacccgcaaaggagatcttcattggaaaattgtttctgtttatatcaacaggagcagtcaggttatgctgaagatgaagagcaggcatgttgctgggaccatcaccaaaaagaaaaagaatgtggtgctggaggtgattacagatatgcccgcctggccaggtcgccaccttctcgagggcggggagcacagacgttactttggtctgaagactgttttgcgtggggtggtggagtttgagtgccggagccaaagggagtacgacatttggactcagggtgtctcaaggctaatctccattgctgcagaaaagaggaacaataggcatagagtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_canalis PH_2

Protein Analysis

321

Amino Acids

35.02

Weight (kDa)

8.86

Isoelectric Point (pI)

38.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22810 AT3G22810 AT3G22810 AT4G14740 AT4G14740 AT4G14740 AT4G14740 AT5G43870 AT5G43870
fragaria_vesca	FvH4_4g01030 FvH4_4g01030 FvH4_4g01030 FvH4_4g01030
malus_domestica	MD13G1198600.v1.1 MD16G1198700.v1.1
prunus_persica	Prupe.1G020300_v2.0.a1 Prupe.1G020300_v2.0.a1
pyrus_communis	pycom13g17240 pycom16g16750
rosa_chinensis	RchiOBHm_Chr4g0387611
rosa_laevigata	RLG00000010107
rosa_multiflora	Rmu_sc0003953.1_g000004 Rmu_sc0012183.1_g000002
rosa_roxburghii	Rroxscaffold_5G00334290
rosa_rugosa	Rorug03G0311200 Rorug03G0311300 Rorug03G0311400
rosa_samantha	Rh4AG017100 Rh4BG011900 Rh4CG018300 Rh4DG012900
rosa_wichuraiana	Rw4G001090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	401
AccBSI	CCGCTC	2 cut(s)	90, 107
AccIII	TCCGGA	1 cut(s)	230
AcoI	YGGCCR	2 cut(s)	198, 785
AcsI	RAATTY	1 cut(s)	571
AcuI	CTGAAG	4 cut(s)	529, 644, 719, 857
AcyI	GRCGYC	2 cut(s)	174, 216
AfaI	GTAC	1 cut(s)	890
AfiI	CCNNNNNNNGG	6 cut(s)	12, 52, 93, 140, 340, 805
AgsI	TTSAA	2 cut(s)	451, 488
AjnI	CCWGG	5 cut(s)	92, 138, 440, 782, 787
AluBI	AGCT	6 cut(s)	157, 271, 351, 506, 543, 619
AluI	AGCT	6 cut(s)	157, 271, 351, 506, 543, 619
Alw21I	GWGCWC	3 cut(s)	333, 621, 819
Alw26I	GTCTC	6 cut(s)	50, 106, 121, 232, 254, 916
Ama87I	CYCGRG	2 cut(s)	188, 803
Aor13HI	TCCGGA	1 cut(s)	230
AoxI	GGCC	6 cut(s)	27, 142, 198, 309, 438, 785
ApeKI	GCWGC	2 cut(s)	425, 932
ApoI	RAATTY	1 cut(s)	571
Asp700I	GAANNNNTTC	1 cut(s)	558
AspLEI	GCGC	1 cut(s)	630
AspS9I	GGNCC	3 cut(s)	28, 142, 726
AsuC2I	CCSGG	3 cut(s)	26, 53, 376
AsuHPI	GGTGA	3 cut(s)	563, 724, 775
AvaI	CYCGRG	2 cut(s)	188, 803
AvaII	GGWCC	1 cut(s)	726
AxyI	CCTNAGG	1 cut(s)	564
BalI	TGGCCA	1 cut(s)	787
BanI	GGYRCC	1 cut(s)	401
BanII	GRGCYC	2 cut(s)	72, 621
BbsI	GAAGAC	1 cut(s)	845
Bbv12I	GWGCWC	3 cut(s)	333, 621, 819
BbvCI	CCTCAGC	1 cut(s)	306
BbvI	GCAGC	2 cut(s)	437, 919
BccI	CCATC	1 cut(s)	737
BceAI	ACGGC	2 cut(s)	209, 341
BciT130I	CCWGG	5 cut(s)	94, 140, 442, 784, 789
BcnI	CCSGG	3 cut(s)	26, 53, 376
BcoDI	GTCTC	6 cut(s)	50, 106, 121, 232, 254, 916
BfaI	CTAG	1 cut(s)	602
BfmI	CTRYAG	2 cut(s)	501, 933
BglI	GCCNNNNNGGC	1 cut(s)	784
BglII	AGATCT	1 cut(s)	643
BisI	GCNGC	7 cut(s)	219, 222, 303, 405, 426, 471, 933
BlsI	GCNGC	7 cut(s)	220, 223, 304, 406, 427, 472, 934
Bme1390I	CCNGG	8 cut(s)	26, 53, 94, 140, 376, 442, 784, 789
Bme18I	GGWCC	1 cut(s)	726
BmeT110I	CYCGRG	2 cut(s)	188, 803
BmgT120I	GGNCC	3 cut(s)	28, 142, 726
BmiI	GGNNCC	5 cut(s)	132, 282, 403, 727, 878
BmrFI	CCNGG	8 cut(s)	26, 53, 94, 140, 376, 442, 784, 789
BpiI	GAAGAC	1 cut(s)	845
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
BpmI	CTGGAG	2 cut(s)	115, 779
Bpu10I	CCTNAGC	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	898
BpuMI	CCSGG	3 cut(s)	26, 53, 376
BsaHI	GRCGYC	2 cut(s)	174, 216
BsaJI	CCNNGG	9 cut(s)	51, 72, 126, 138, 139, 189, 312, 375, 441
BsaWI	WCCGGW	1 cut(s)	230
BsaXI	ACNNNNNCTCC	2 cut(s)	854, 884
Bsc4I	CCNNNNNNNGG	6 cut(s)	12, 52, 93, 140, 340, 805
Bse118I	RCCGGY	2 cut(s)	200, 398
Bse21I	CCTNAGG	1 cut(s)	564
Bse3DI	GCAATG	3 cut(s)	413, 465, 927
BseAI	TCCGGA	1 cut(s)	230
BseBI	CCWGG	5 cut(s)	94, 140, 442, 784, 789
BseDI	CCNNGG	9 cut(s)	51, 72, 126, 138, 139, 189, 312, 375, 441
BseLI	CCNNNNNNNGG	6 cut(s)	12, 52, 93, 140, 340, 805
BseMI	GCAATG	3 cut(s)	413, 465, 927
BseMII	CTCAG	4 cut(s)	281, 297, 555, 917
BseRI	GAGGAG	3 cut(s)	25, 123, 581
BseXI	GCAGC	2 cut(s)	437, 919
BseYI	CCCAGC	1 cut(s)	722
BsgI	GTGCAG	1 cut(s)	444
BshFI	GGCC	6 cut(s)	29, 144, 200, 311, 440, 787
BshNI	GGYRCC	1 cut(s)	401
BsiHKAI	GWGCWC	3 cut(s)	333, 621, 819
BsiHKCI	CYCGRG	2 cut(s)	188, 803
BsiSI	CCGG	7 cut(s)	26, 53, 201, 231, 375, 399, 874
BslFI	GGGAC	2 cut(s)	33, 739
BslI	CCNNNNNNNGG	6 cut(s)	12, 52, 93, 140, 340, 805
BsmAI	GTCTC	6 cut(s)	50, 106, 121, 232, 254, 916
BsmBI	CGTCTC	2 cut(s)	106, 232
BsmFI	GGGAC	2 cut(s)	33, 739
BsmI	GAATGC	1 cut(s)	502
BsnI	GGCC	6 cut(s)	29, 144, 200, 311, 440, 787
BsoBI	CYCGRG	2 cut(s)	188, 803
Bsp1286I	GDGCHC	4 cut(s)	72, 333, 621, 819
Bsp13I	TCCGGA	1 cut(s)	230
Bsp143I	GATC	1 cut(s)	643
Bsp19I	CCATGG	2 cut(s)	72, 312
BspANI	GGCC	6 cut(s)	29, 144, 200, 311, 440, 787
BspCNI	CTCAG	4 cut(s)	280, 298, 556, 916
BspEI	TCCGGA	1 cut(s)	230
BspHI	TCATGA	1 cut(s)	384
BspLI	GGNNCC	5 cut(s)	132, 282, 403, 727, 878
BspMAI	CTGCAG	1 cut(s)	937
BspQI	GCTCTTC	1 cut(s)	701
BspT107I	GGYRCC	1 cut(s)	401
BsrBI	CCGCTC	2 cut(s)	90, 107
BsrDI	GCAATG	3 cut(s)	413, 465, 927
BsrFI	RCCGGY	2 cut(s)	200, 398
BssAI	RCCGGY	2 cut(s)	200, 398
BssECI	CCNNGG	9 cut(s)	51, 72, 126, 138, 139, 189, 312, 375, 441
BssMI	GATC	1 cut(s)	643
BssNI	GRCGYC	2 cut(s)	174, 216
BssT1I	CCWWGG	3 cut(s)	72, 126, 312
Bst2UI	CCWGG	5 cut(s)	94, 140, 442, 784, 789
Bst4CI	ACNGT	2 cut(s)	539, 844
Bst6I	CTCTTC	2 cut(s)	47, 701
BstACI	GRCGYC	2 cut(s)	174, 216
BstC8I	GCNNGC	4 cut(s)	202, 285, 713, 780
BstDEI	CTNAG	5 cut(s)	267, 306, 564, 577, 903
BstDSI	CCRYGG	2 cut(s)	72, 312
BstENI	CCTNNNNNAGG	1 cut(s)	803
BstHHI	GCGC	1 cut(s)	630
BstKTI	GATC	1 cut(s)	646
BstMAI	GTCTC	6 cut(s)	50, 106, 121, 232, 254, 916
BstMBI	GATC	1 cut(s)	643
BstMWI	GCNNNNNNNGC	7 cut(s)	96, 308, 317, 404, 410, 625, 784
BstNI	CCWGG	5 cut(s)	94, 140, 442, 784, 789
BstNSI	RCATGY	1 cut(s)	719
BstSCI	CCNGG	8 cut(s)	24, 51, 92, 138, 374, 440, 782, 787
BstSFI	CTRYAG	2 cut(s)	501, 933
BstV1I	GCAGC	2 cut(s)	437, 919
BstV2I	GAAGAC	1 cut(s)	845
BstX2I	RGATCY	1 cut(s)	643
BstXI	CCANNNNNNTGG	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	643
Bsu36I	CCTNAGG	1 cut(s)	564
BsuRI	GGCC	6 cut(s)	29, 144, 200, 311, 440, 787
BtgI	CCRYGG	2 cut(s)	72, 312
BtsI	GCAGTG	1 cut(s)	17
BtsIMutI	CAGTG	2 cut(s)	17, 553
Cac8I	GCNNGC	4 cut(s)	202, 285, 713, 780
CciI	TCATGA	1 cut(s)	384
CfoI	GCGC	1 cut(s)	630
Cfr10I	RCCGGY	2 cut(s)	200, 398
Cfr13I	GGNCC	3 cut(s)	28, 142, 726
CseI	GACGC	4 cut(s)	88, 182, 224, 397
Csp6I	GTAC	1 cut(s)	889
CviAII	CATG	5 cut(s)	73, 277, 313, 385, 716
CviQI	GTAC	1 cut(s)	889
DdeI	CTNAG	5 cut(s)	267, 306, 564, 577, 903
DpnI	GATC	1 cut(s)	645
DpnII	GATC	1 cut(s)	643
EaeI	YGGCCR	2 cut(s)	198, 785
Eam1104I	CTCTTC	2 cut(s)	47, 701
EarI	CTCTTC	2 cut(s)	47, 701
EciI	GGCGGA	1 cut(s)	343
Ecl136II	GAGCTC	1 cut(s)	619
Eco130I	CCWWGG	3 cut(s)	72, 126, 312
Eco24I	GRGCYC	2 cut(s)	72, 621
Eco32I	GATATC	1 cut(s)	382
Eco47I	GGWCC	1 cut(s)	726
Eco53kI	GAGCTC	1 cut(s)	619
Eco57I	CTGAAG	4 cut(s)	529, 644, 719, 857
Eco81I	CCTNAGG	1 cut(s)	564
Eco88I	CYCGRG	2 cut(s)	188, 803
EcoICRI	GAGCTC	1 cut(s)	619
EcoNI	CCTNNNNNAGG	1 cut(s)	803
EcoRII	CCWGG	5 cut(s)	92, 138, 440, 782, 787
EcoRV	GATATC	1 cut(s)	382
EcoT14I	CCWWGG	3 cut(s)	72, 126, 312
EcoT38I	GRGCYC	2 cut(s)	72, 621
ErhI	CCWWGG	3 cut(s)	72, 126, 312
Esp3I	CGTCTC	2 cut(s)	106, 232
FaeI	CATG	5 cut(s)	76, 280, 316, 388, 719
FaiI	YATR	9 cut(s)	74, 278, 314, 386, 672, 695, 717, 776, 957
FalI	AAGNNNNNCTT	2 cut(s)	630, 662
FaqI	GGGAC	2 cut(s)	33, 739
FatI	CATG	5 cut(s)	72, 276, 312, 384, 715
FauI	CCCGC	4 cut(s)	95, 641, 787, 803
Fnu4HI	GCNGC	7 cut(s)	219, 222, 303, 405, 426, 471, 933
FriOI	GRGCYC	2 cut(s)	72, 621
Fsp4HI	GCNGC	7 cut(s)	219, 222, 303, 405, 426, 471, 933
FspBI	CTAG	1 cut(s)	602
GlaI	GCGC	1 cut(s)	629
GluI	GCNGC	7 cut(s)	219, 222, 303, 405, 426, 471, 933
GsaI	CCCAGC	1 cut(s)	726
GsuI	CTGGAG	2 cut(s)	115, 779
HaeIII	GGCC	6 cut(s)	29, 144, 200, 311, 440, 787
HapII	CCGG	7 cut(s)	26, 53, 201, 231, 375, 399, 874
HgaI	GACGC	4 cut(s)	88, 182, 224, 397
HhaI	GCGC	1 cut(s)	630
Hin1I	GRCGYC	2 cut(s)	174, 216
Hin1II	CATG	5 cut(s)	76, 280, 316, 388, 719
Hin6I	GCGC	1 cut(s)	628
HinP1I	GCGC	1 cut(s)	628
HinfI	GANTC	2 cut(s)	58, 901
HpaII	CCGG	7 cut(s)	26, 53, 201, 231, 375, 399, 874
HphI	GGTGA	3 cut(s)	563, 724, 775
Hpy166II	GTNNAC	1 cut(s)	554
Hpy188I	TCNGA	3 cut(s)	172, 259, 837
Hpy188III	TCNNGA	8 cut(s)	110, 188, 231, 385, 460, 563, 622, 803
Hpy8I	GTNNAC	1 cut(s)	554
HpyAV	CCTTC	3 cut(s)	344, 445, 809
HpyCH4III	ACNGT	2 cut(s)	539, 844
HpyCH4IV	ACGT	1 cut(s)	823
HpyCH4V	TGCA	3 cut(s)	425, 588, 935
HpyF10VI	GCNNNNNNNGC	7 cut(s)	96, 308, 317, 404, 410, 625, 784
HpyF3I	CTNAG	5 cut(s)	267, 306, 564, 577, 903
HpySE526I	ACGT	1 cut(s)	823
Hsp92I	GRCGYC	2 cut(s)	174, 216
Hsp92II	CATG	5 cut(s)	76, 280, 316, 388, 719
HspAI	GCGC	1 cut(s)	628
Kpn2I	TCCGGA	1 cut(s)	230
KroI	GCCGGC	1 cut(s)	200
KroNI	GCCGGC	1 cut(s)	202
Kzo9I	GATC	1 cut(s)	643
LguI	GCTCTTC	1 cut(s)	701
Lsp1109I	GCAGC	2 cut(s)	437, 919
MaeI	CTAG	1 cut(s)	602
MaeII	ACGT	1 cut(s)	823
MaeIII	GTNAC	1 cut(s)	824
MalI	GATC	1 cut(s)	645
MbiI	CCGCTC	2 cut(s)	90, 107
MboI	GATC	1 cut(s)	643
MboII	GAAGA	6 cut(s)	34, 246, 638, 712, 718, 850
MflI	RGATCY	1 cut(s)	643
MhlI	GDGCHC	4 cut(s)	72, 333, 621, 819
MlsI	TGGCCA	1 cut(s)	787
MluCI	AATT	4 cut(s)	529, 571, 596, 657
MluNI	TGGCCA	1 cut(s)	787
MlyI	GAGTC	2 cut(s)	52, 895
MmeI	TCCRAC	1 cut(s)	189
Mox20I	TGGCCA	1 cut(s)	787
MroI	TCCGGA	1 cut(s)	230
MroNI	GCCGGC	1 cut(s)	200
MroXI	GAANNNNTTC	1 cut(s)	558
MscI	TGGCCA	1 cut(s)	787
MseI	TTAA	1 cut(s)	434
Msp20I	TGGCCA	1 cut(s)	787
MspI	CCGG	7 cut(s)	26, 53, 201, 231, 375, 399, 874
MspR9I	CCNGG	8 cut(s)	26, 53, 94, 140, 376, 442, 784, 789
Mva1269I	GAATGC	1 cut(s)	502
MvaI	CCWGG	5 cut(s)	94, 140, 442, 784, 789
MwoI	GCNNNNNNNGC	7 cut(s)	96, 308, 317, 404, 410, 625, 784
NaeI	GCCGGC	1 cut(s)	202
NciI	CCSGG	3 cut(s)	26, 53, 376
NcoI	CCATGG	2 cut(s)	72, 312
NdeII	GATC	1 cut(s)	643
NgoMIV	GCCGGC	1 cut(s)	200
NlaIII	CATG	5 cut(s)	76, 280, 316, 388, 719
NlaIV	GGNNCC	5 cut(s)	132, 282, 403, 727, 878
NspI	RCATGY	1 cut(s)	719
PaeR7I	CTCGAG	1 cut(s)	803
PagI	TCATGA	1 cut(s)	384
PasI	CCCWGGG	1 cut(s)	139
PciSI	GCTCTTC	1 cut(s)	701
PcsI	WCGNNNNNNNCGW	2 cut(s)	222, 255
PctI	GAATGC	1 cut(s)	502
PdiI	GCCGGC	1 cut(s)	202
PdmI	GAANNNNTTC	1 cut(s)	558
PfoI	TCCNGGA	1 cut(s)	92
PkrI	GCNGC	7 cut(s)	220, 223, 304, 406, 427, 472, 934
PleI	GAGTC	2 cut(s)	52, 895
PpsI	GAGTC	2 cut(s)	52, 895
Psp124BI	GAGCTC	1 cut(s)	621
Psp6I	CCWGG	5 cut(s)	92, 138, 440, 782, 787
PspFI	CCCAGC	1 cut(s)	722
PspGI	CCWGG	5 cut(s)	92, 138, 440, 782, 787
PspN4I	GGNNCC	5 cut(s)	132, 282, 403, 727, 878
PspPI	GGNCC	3 cut(s)	28, 142, 726
PstI	CTGCAG	1 cut(s)	937
PsuI	RGATCY	1 cut(s)	643
RsaI	GTAC	1 cut(s)	890
RsaNI	GTAC	1 cut(s)	889
SacI	GAGCTC	1 cut(s)	621
SapI	GCTCTTC	1 cut(s)	701
SaqAI	TTAA	1 cut(s)	434
SatI	GCNGC	7 cut(s)	219, 222, 303, 405, 426, 471, 933
Sau3AI	GATC	1 cut(s)	643
Sau96I	GGNCC	3 cut(s)	28, 142, 726
SchI	GAGTC	2 cut(s)	52, 895
ScrFI	CCNGG	8 cut(s)	26, 53, 94, 140, 376, 442, 784, 789
SduI	GDGCHC	4 cut(s)	72, 333, 621, 819
SfcI	CTRYAG	2 cut(s)	501, 933
Sfr274I	CTCGAG	1 cut(s)	803
SgrAI	CRCCGGYG	1 cut(s)	398
SinI	GGWCC	1 cut(s)	726
SlaI	CTCGAG	1 cut(s)	803
SmlI	CTYRAG	2 cut(s)	803, 913
SmoI	CTYRAG	2 cut(s)	803, 913
Sse9I	AATT	4 cut(s)	529, 571, 596, 657
SspMI	CTAG	1 cut(s)	602
SstI	GAGCTC	1 cut(s)	621
StyD4I	CCNGG	8 cut(s)	24, 51, 92, 138, 374, 440, 782, 787
StyI	CCWWGG	3 cut(s)	72, 126, 312
TaaI	ACNGT	2 cut(s)	539, 844
TaiI	ACGT	1 cut(s)	826
TaqI	TCGA	2 cut(s)	111, 804
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	4 cut(s)	529, 571, 596, 657
TauI	GCSGC	5 cut(s)	221, 224, 305, 407, 473
Tru1I	TTAA	1 cut(s)	434
Tru9I	TTAA	1 cut(s)	434
TscAI	CASTG	2 cut(s)	17, 553
TseI	GCWGC	2 cut(s)	425, 932
TspDTI	ATGAA	2 cut(s)	638, 719
TspGWI	ACGGA	1 cut(s)	35
TspRI	CASTG	2 cut(s)	17, 553
VpaK11BI	GGWCC	1 cut(s)	726
XagI	CCTNNNNNAGG	1 cut(s)	803
XapI	RAATTY	1 cut(s)	571
XceI	RCATGY	1 cut(s)	719
XhoI	CTCGAG	1 cut(s)	803
XmnI	GAANNNNTTC	1 cut(s)	558
XspI	CTAG	1 cut(s)	602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.