Plant pleckstrin homology-like region
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G22810 AT3G22810 AT3G22810 AT4G14740 AT4G14740 AT4G14740 AT4G14740 AT5G43870 AT5G43870 |
| fragaria_vesca | FvH4_4g01030 FvH4_4g01030 FvH4_4g01030 FvH4_4g01030 |
| malus_domestica | MD13G1198600.v1.1 MD16G1198700.v1.1 |
| prunus_persica | Prupe.1G020300_v2.0.a1 Prupe.1G020300_v2.0.a1 |
| pyrus_communis | pycom13g17240 pycom16g16750 |
| rosa_chinensis | RchiOBHm_Chr4g0387611 |
| rosa_laevigata | RLG00000010107 |
| rosa_multiflora | Rmu_sc0003953.1_g000004 Rmu_sc0012183.1_g000002 |
| rosa_roxburghii | Rroxscaffold_5G00334290 |
| rosa_rugosa | Rorug03G0311200 Rorug03G0311300 Rorug03G0311400 |
| rosa_samantha | Rh4AG017100 Rh4BG011900 Rh4CG018300 Rh4DG012900 |
| rosa_wichuraiana | Rw4G001090 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 105 |
| AcoI | YGGCCR | 1 cut(s) | 69 |
| AcsI | RAATTY | 1 cut(s) | 149 |
| AcuI | CTGAAG | 1 cut(s) | 117 |
| AflIII | ACRYGT | 1 cut(s) | 88 |
| AluBI | AGCT | 2 cut(s) | 131, 137 |
| AluI | AGCT | 2 cut(s) | 131, 137 |
| AlwI | GGATC | 1 cut(s) | 105 |
| AoxI | GGCC | 1 cut(s) | 69 |
| ApoI | RAATTY | 1 cut(s) | 149 |
| AsuC2I | CCSGG | 2 cut(s) | 41, 56 |
| BalI | TGGCCA | 1 cut(s) | 71 |
| BcnI | CCSGG | 2 cut(s) | 41, 56 |
| Bme1390I | CCNGG | 2 cut(s) | 41, 56 |
| BmrFI | CCNGG | 2 cut(s) | 41, 56 |
| BmsI | GCATC | 1 cut(s) | 100 |
| BpuMI | CCSGG | 2 cut(s) | 41, 56 |
| Bse3DI | GCAATG | 1 cut(s) | 55 |
| BseGI | GGATG | 1 cut(s) | 115 |
| BseMI | GCAATG | 1 cut(s) | 55 |
| BshFI | GGCC | 1 cut(s) | 71 |
| BsiSI | CCGG | 2 cut(s) | 40, 56 |
| BslFI | GGGAC | 1 cut(s) | 38 |
| BsmFI | GGGAC | 1 cut(s) | 38 |
| BsnI | GGCC | 1 cut(s) | 71 |
| Bsp143I | GATC | 1 cut(s) | 97 |
| BspANI | GGCC | 1 cut(s) | 71 |
| BspPI | GGATC | 1 cut(s) | 105 |
| BsrDI | GCAATG | 1 cut(s) | 55 |
| BssMI | GATC | 1 cut(s) | 97 |
| Bst6I | CTCTTC | 1 cut(s) | 139 |
| BstEII | GGTNACC | 1 cut(s) | 25 |
| BstF5I | GGATG | 1 cut(s) | 115 |
| BstKTI | GATC | 1 cut(s) | 100 |
| BstMBI | GATC | 1 cut(s) | 97 |
| BstNSI | RCATGY | 1 cut(s) | 92 |
| BstPI | GGTNACC | 1 cut(s) | 25 |
| BstSCI | CCNGG | 2 cut(s) | 39, 54 |
| BsuRI | GGCC | 1 cut(s) | 71 |
| BtsCI | GGATG | 1 cut(s) | 115 |
| CviAII | CATG | 1 cut(s) | 89 |
| CviJI | RGCY | 4 cut(s) | 59, 71, 131, 137 |
| CviKI_1 | RGCY | 4 cut(s) | 59, 71, 131, 137 |
| DpnI | GATC | 1 cut(s) | 99 |
| DpnII | GATC | 1 cut(s) | 97 |
| EaeI | YGGCCR | 1 cut(s) | 69 |
| Eam1104I | CTCTTC | 1 cut(s) | 139 |
| EarI | CTCTTC | 1 cut(s) | 139 |
| Eco57I | CTGAAG | 1 cut(s) | 117 |
| Eco91I | GGTNACC | 1 cut(s) | 25 |
| EcoO65I | GGTNACC | 1 cut(s) | 25 |
| EcoRI | GAATTC | 1 cut(s) | 149 |
| FaeI | CATG | 1 cut(s) | 92 |
| FaiI | YATR | 8 cut(s) | 7, 14, 33, 78, 90, 104, 106, 157 |
| FaqI | GGGAC | 1 cut(s) | 38 |
| FatI | CATG | 1 cut(s) | 88 |
| FauNDI | CATATG | 1 cut(s) | 104 |
| FokI | GGATG | 1 cut(s) | 122 |
| HaeIII | GGCC | 1 cut(s) | 71 |
| HapII | CCGG | 2 cut(s) | 40, 56 |
| Hin1II | CATG | 1 cut(s) | 92 |
| HpaII | CCGG | 2 cut(s) | 40, 56 |
| HpyAV | CCTTC | 1 cut(s) | 38 |
| Hsp92II | CATG | 1 cut(s) | 92 |
| Kzo9I | GATC | 1 cut(s) | 97 |
| LpnPI | CCDG | 3 cut(s) | 53, 53, 69 |
| LweI | GCATC | 1 cut(s) | 100 |
| MaeIII | GTNAC | 1 cut(s) | 25 |
| MalI | GATC | 1 cut(s) | 99 |
| MboI | GATC | 1 cut(s) | 97 |
| MboII | GAAGA | 1 cut(s) | 156 |
| MlsI | TGGCCA | 1 cut(s) | 71 |
| MluCI | AATT | 2 cut(s) | 73, 149 |
| MluNI | TGGCCA | 1 cut(s) | 71 |
| MnlI | CCTC | 1 cut(s) | 129 |
| Mox20I | TGGCCA | 1 cut(s) | 71 |
| MscI | TGGCCA | 1 cut(s) | 71 |
| Msp20I | TGGCCA | 1 cut(s) | 71 |
| MspI | CCGG | 2 cut(s) | 40, 56 |
| MspR9I | CCNGG | 2 cut(s) | 41, 56 |
| NciI | CCSGG | 2 cut(s) | 41, 56 |
| NdeI | CATATG | 1 cut(s) | 104 |
| NdeII | GATC | 1 cut(s) | 97 |
| NlaIII | CATG | 1 cut(s) | 92 |
| NspI | RCATGY | 1 cut(s) | 92 |
| PciI | ACATGT | 1 cut(s) | 88 |
| PfoI | TCCNGGA | 1 cut(s) | 39 |
| PscI | ACATGT | 1 cut(s) | 88 |
| PspEI | GGTNACC | 1 cut(s) | 25 |
| Sau3AI | GATC | 1 cut(s) | 97 |
| ScrFI | CCNGG | 2 cut(s) | 41, 56 |
| SetI | ASST | 2 cut(s) | 133, 139 |
| SfaNI | GCATC | 1 cut(s) | 100 |
| SgeI | CNNG | 7 cut(s) | 35, 52, 53, 67, 68, 80, 101 |
| Sse9I | AATT | 2 cut(s) | 73, 149 |
| StyD4I | CCNGG | 2 cut(s) | 39, 54 |
| TasI | AATT | 2 cut(s) | 73, 149 |
| XapI | RAATTY | 1 cut(s) | 149 |
| XceI | RCATGY | 1 cut(s) | 92 |