AT5G43870

Plant pleckstrin homology-like region

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
17631426 .. 17635945
4520 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G43870.2

Sequence Viewer

Length: 1362 bp
ATGGATCAAAAAAGTAAAACGATTGGAGAACAATGGTGGAGGTCAAATCCAACGTTTAAACCGCCTGAAACGCCATTAGATTCTATGGAGTTTTTGTCACGTACTTGGAGTGCTTCCGCTACTGAAGTTTCAAGAGCTGTCGTCGCGTCTCCACCGACTTCTCAACCGCCGCAAATGCGTTTCTCGGAGATCCAAAACGGTTCTTCTGACGTCACTTTGGTGCCGGAAGATGAAGAAAACGGCATCGTTCTTGGAAATACTTTTTCTTTTGCTTCTTCAGAAACTTCTTTAATGGTCATGGAACGTATCATGGCTCAGTCACCGGAGATTTCATCGCCACGAACATCAGGGAGACTTTCTCATAGCTCATTCACCGACAGTCCTCCGATCTCTCCCTCCGACATCGACGACTTTAAGCAATTCTACCGTGTGAGCCCTTCCTTTAACGGCCACATACGTGGTTCATCAGCCATTCCCGGCACCGCCGGAGGGTCTAAAACTGTTGGTCGTTGGCTAAAGGACCGGCGAGAGAAGAAGAGAGAAGAGACGCGTGCACAAAATGCACAGCTTCACGCGGCTGTATCTGTAGCTGGAGTGGCTGCCGCGGTGGCTGCTATCGCTGCAGCCACTGCCTCTCAGTCGAGTTCTGGAACTGACGAGCAAGTGGCCAAAAATGACTCCGCGGTGGCTTCTGCCGCGACTTTGGTGGCGGCGAAGTGTGTGGAAGCTGCAGAGATTATGGGAGCTGATCGTGAGCACTTGGCCTCCGTTGTTAGTTCTGCGGTTAACGTTCGTTCTGCCGGAGATATCATGACTTTGACCGCCGCTGCTGCCACAGCTTTGAGAGGAGCTGCACAATTAAAGGCAAGAGCATTGAAGGAGGTATGGAACATTGCGGCTGTGATTCCTGTAGATAAGGGTACACCAAAAGGCGGTGGTGGTGGTTATAGAGGTGGCGAGTTAGCCCCTGTAGATAATTTTCTTGGGATTTGCAGTAAAGAATTGCTAGCTAAAGGTTGCGAATTGCTTAAACGCACCCGCAAAGGTGATCTTCATTGGAAAGTTGTTTCGATCTACATTAATAGAACAAAGCAGGTAATATTGAAGACTAAGAGCAAACATGTTGCTGGGACCATCACAAAGAAGAAAAAGAATGTGGTGGTGGGATTGGTTAAGGGATTACCGGCGTGGCCTGGCCGGGAAATGCTCGAGGGTGGAGAGAATTTGAGGTATTTCGGGCTGAAGACGGTGGAGAAAAGAGTGATTGAATTCGAGTGCAAAAGCCAAAGGGAATATGATCTTTGGACACAAGGTGTTTCCATGCTTCTTTCCATTGCTTCTGATAGGAAACATAAATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

453

Amino Acids

48.64

Weight (kDa)

9.44

Isoelectric Point (pI)

42.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_canalis PF05703 22 - 307 8.1e-109 Auxin canalisation
PH_2 PF08458 341 - 385 7.4e-16 Plant pleckstrin homology-like region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 213
Acc36I ACCTGC 1 cut(s) 1084
AccB1I GGYRCC 2 cut(s) 220, 479
AccII CGCG 6 cut(s) 146, 550, 575, 605, 683, 698
AclI AACGTT 2 cut(s) 53, 789
AclWI GGATC 2 cut(s) 12, 184
AcoI YGGCCR 3 cut(s) 448, 666, 1195
AcsI RAATTY 2 cut(s) 1222, 1268
AcuI CTGAAG 3 cut(s) 144, 261, 1262
AcyI GRCGYC 1 cut(s) 210
AdeI CACNNNGTG 1 cut(s) 1313
AfaI GTAC 2 cut(s) 103, 922
AfiI CCNNNNNNNGG 2 cut(s) 489, 932
AflIII ACRYGT 2 cut(s) 548, 1120
AgsI TTSAA 4 cut(s) 132, 877, 1105, 1268
AjnI CCWGG 1 cut(s) 1192
AleI CACNNNNGTG 2 cut(s) 218, 456
AluBI AGCT 9 cut(s) 137, 366, 568, 590, 728, 746, 839, 851, 1010
AluI AGCT 9 cut(s) 137, 366, 568, 590, 728, 746, 839, 851, 1010
Alw21I GWGCWC 2 cut(s) 556, 759
Alw26I GTCTC 3 cut(s) 153, 346, 539
Alw44I GTGCAC 1 cut(s) 552
AlwI GGATC 2 cut(s) 12, 184
AlwNI CAGNNNCTG 1 cut(s) 629
Ama87I CYCGRG 1 cut(s) 1208
AoxI GGCC 5 cut(s) 448, 666, 762, 1190, 1195
ApaLI GTGCAC 1 cut(s) 552
ApeKI GCWGC 8 cut(s) 599, 611, 620, 623, 728, 827, 830, 851
ApoI RAATTY 2 cut(s) 1222, 1268
AseI ATTAAT 1 cut(s) 1080
AspS9I GGNCC 2 cut(s) 520, 1131
AsuC2I CCSGG 2 cut(s) 477, 1199
AsuHPI GGTGA 3 cut(s) 312, 364, 1058
AsuNHI GCTAGC 1 cut(s) 1006
AvaI CYCGRG 1 cut(s) 1208
AvaII GGWCC 2 cut(s) 520, 1131
BaeGI GKGCMC 1 cut(s) 556
BalI TGGCCA 1 cut(s) 668
BanI GGYRCC 2 cut(s) 220, 479
BanII GRGCYC 1 cut(s) 437
BbsI GAAGAC 2 cut(s) 1112, 1250
Bbv12I GWGCWC 2 cut(s) 556, 759
BbvI GCAGC 8 cut(s) 586, 598, 607, 635, 715, 814, 817, 838
BccI CCATC 1 cut(s) 1142
BceAI ACGGC 2 cut(s) 256, 463
BciT130I CCWGG 1 cut(s) 1194
BcnI CCSGG 2 cut(s) 477, 1199
BcoDI GTCTC 3 cut(s) 153, 346, 539
BfaI CTAG 1 cut(s) 1007
BfmI CTRYAG 5 cut(s) 585, 621, 729, 909, 969
BfuAI ACCTGC 1 cut(s) 1084
BglI GCCNNNNNGGC 1 cut(s) 608
Bme1390I CCNGG 3 cut(s) 477, 1194, 1199
Bme18I GGWCC 2 cut(s) 520, 1131
BmeT110I CYCGRG 1 cut(s) 1208
BmgT120I GGNCC 2 cut(s) 520, 1131
BmiI GGNNCC 3 cut(s) 222, 481, 1132
BmrFI CCNGG 3 cut(s) 477, 1194, 1199
BmsI GCATC 1 cut(s) 252
BmtI GCTAGC 1 cut(s) 1010
BpiI GAAGAC 2 cut(s) 1112, 1250
BplI GAGNNNNNCTC 2 cut(s) 343, 375
BpmI CTGGAG 1 cut(s) 612
BpuMI CCSGG 2 cut(s) 477, 1199
BsaAI YACGTR 2 cut(s) 101, 458
BsaHI GRCGYC 1 cut(s) 210
BsaJI CCNNGG 2 cut(s) 603, 681
BsaWI WCCGGW 1 cut(s) 322
BsaXI ACNNNNNCTCC 4 cut(s) 80, 110, 749, 779
Bsc4I CCNNNNNNNGG 2 cut(s) 489, 932
Bse118I RCCGGY 2 cut(s) 522, 1183
Bse3DI GCAATG 2 cut(s) 891, 1332
BseBI CCWGG 1 cut(s) 1194
BseDI CCNNGG 2 cut(s) 603, 681
BseLI CCNNNNNNNGG 2 cut(s) 489, 932
BseMI GCAATG 2 cut(s) 891, 1332
BseMII CTCAG 2 cut(s) 329, 650
BseRI GAGGAG 1 cut(s) 861
BseSI GKGCMC 1 cut(s) 556
BseXI GCAGC 8 cut(s) 586, 598, 607, 635, 715, 814, 817, 838
BseYI CCCAGC 1 cut(s) 1127
BsgI GTGCAG 1 cut(s) 837
Bsh1236I CGCG 6 cut(s) 146, 550, 575, 605, 683, 698
BshFI GGCC 5 cut(s) 450, 668, 764, 1192, 1197
BshNI GGYRCC 2 cut(s) 220, 479
BsiHKAI GWGCWC 2 cut(s) 556, 759
BsiHKCI CYCGRG 1 cut(s) 1208
BsiSI CCGG 8 cut(s) 224, 323, 477, 486, 523, 801, 1184, 1198
BslFI GGGAC 1 cut(s) 1144
BslI CCNNNNNNNGG 2 cut(s) 489, 932
BsmAI GTCTC 3 cut(s) 153, 346, 539
BsmBI CGTCTC 2 cut(s) 153, 539
BsmFI GGGAC 1 cut(s) 1144
BsnI GGCC 5 cut(s) 450, 668, 764, 1192, 1197
BsoBI CYCGRG 1 cut(s) 1208
Bsp1286I GDGCHC 3 cut(s) 437, 556, 759
Bsp143I GATC 7 cut(s) 4, 189, 387, 748, 1048, 1071, 1297
BspANI GGCC 5 cut(s) 450, 668, 764, 1192, 1197
BspCNI CTCAG 2 cut(s) 328, 649
BspFNI CGCG 6 cut(s) 146, 550, 575, 605, 683, 698
BspHI TCATGA 1 cut(s) 810
BspLI GGNNCC 3 cut(s) 222, 481, 1132
BspMAI CTGCAG 2 cut(s) 625, 733
BspMI ACCTGC 1 cut(s) 1084
BspOI GCTAGC 1 cut(s) 1010
BspPI GGATC 2 cut(s) 12, 184
BspT107I GGYRCC 2 cut(s) 220, 479
BsrDI GCAATG 2 cut(s) 891, 1332
BsrFI RCCGGY 2 cut(s) 522, 1183
BssAI RCCGGY 2 cut(s) 522, 1183
BssECI CCNNGG 2 cut(s) 603, 681
BssMI GATC 7 cut(s) 4, 189, 387, 748, 1048, 1071, 1297
BssNI GRCGYC 1 cut(s) 210
Bst2UI CCWGG 1 cut(s) 1194
Bst4CI ACNGT 5 cut(s) 200, 380, 428, 502, 1249
Bst6I CTCTTC 2 cut(s) 530, 537
BstACI GRCGYC 1 cut(s) 210
BstAPI GCANNNNNTGC 2 cut(s) 560, 629
BstBAI YACGTR 2 cut(s) 101, 458
BstC8I GCNNGC 2 cut(s) 552, 1008
BstDEI CTNAG 3 cut(s) 315, 636, 1110
BstDSI CCRYGG 2 cut(s) 603, 681
BstFNI CGCG 6 cut(s) 146, 550, 575, 605, 683, 698
BstKTI GATC 7 cut(s) 7, 192, 390, 751, 1051, 1074, 1300
BstMAI GTCTC 3 cut(s) 153, 346, 539
BstMBI GATC 7 cut(s) 4, 189, 387, 748, 1048, 1071, 1297
BstNI CCWGG 1 cut(s) 1194
BstNSI RCATGY 1 cut(s) 1124
BstSCI CCNGG 3 cut(s) 475, 1192, 1197
BstSFI CTRYAG 5 cut(s) 585, 621, 729, 909, 969
BstSLI GKGCMC 1 cut(s) 556
BstUI CGCG 6 cut(s) 146, 550, 575, 605, 683, 698
BstV1I GCAGC 8 cut(s) 586, 598, 607, 635, 715, 814, 817, 838
BstV2I GAAGAC 2 cut(s) 1112, 1250
BstX2I RGATCY 1 cut(s) 189
BstXI CCANNNNNNTGG 1 cut(s) 458
BstYI RGATCY 1 cut(s) 189
BsuRI GGCC 5 cut(s) 450, 668, 764, 1192, 1197
BtgI CCRYGG 2 cut(s) 603, 681
BtgZI GCGATG 1 cut(s) 318
BtsI GCAGTG 1 cut(s) 627
BtsIMutI CAGTG 1 cut(s) 627
BveI ACCTGC 1 cut(s) 1084
Cac8I GCNNGC 2 cut(s) 552, 1008
CaiI CAGNNNCTG 1 cut(s) 629
CciI TCATGA 1 cut(s) 810
Cfr10I RCCGGY 2 cut(s) 522, 1183
Cfr13I GGNCC 2 cut(s) 520, 1131
Cfr42I CCGCGG 2 cut(s) 606, 684
CseI GACGC 2 cut(s) 135, 556
Csp6I GTAC 2 cut(s) 102, 921
CviAII CATG 5 cut(s) 298, 310, 811, 1121, 1321
CviQI GTAC 2 cut(s) 102, 921
DdeI CTNAG 3 cut(s) 315, 636, 1110
DpnI GATC 7 cut(s) 6, 191, 389, 750, 1050, 1073, 1299
DpnII GATC 7 cut(s) 4, 189, 387, 748, 1048, 1071, 1297
DraI TTTAAA 1 cut(s) 58
DraIII CACNNNGTG 1 cut(s) 1313
EaeI YGGCCR 3 cut(s) 448, 666, 1195
Eam1104I CTCTTC 2 cut(s) 530, 537
EarI CTCTTC 2 cut(s) 530, 537
Eco24I GRGCYC 1 cut(s) 437
Eco32I GATATC 1 cut(s) 808
Eco47I GGWCC 2 cut(s) 520, 1131
Eco57I CTGAAG 3 cut(s) 144, 261, 1262
Eco88I CYCGRG 1 cut(s) 1208
EcoRI GAATTC 1 cut(s) 1268
EcoRII CCWGG 1 cut(s) 1192
EcoRV GATATC 1 cut(s) 808
EcoT38I GRGCYC 1 cut(s) 437
Esp3I CGTCTC 2 cut(s) 153, 539
FaeI CATG 5 cut(s) 301, 313, 814, 1124, 1324
FalI AAGNNNNNCTT 2 cut(s) 1035, 1067
FaqI GGGAC 1 cut(s) 1144
FatI CATG 5 cut(s) 297, 309, 810, 1120, 1320
FauI CCCGC 1 cut(s) 1046
FriOI GRGCYC 1 cut(s) 437
FspBI CTAG 1 cut(s) 1007
GsaI CCCAGC 1 cut(s) 1131
GsuI CTGGAG 1 cut(s) 612
HaeIII GGCC 5 cut(s) 450, 668, 764, 1192, 1197
HapII CCGG 8 cut(s) 224, 323, 477, 486, 523, 801, 1184, 1198
HgaI GACGC 2 cut(s) 135, 556
Hin1I GRCGYC 1 cut(s) 210
Hin1II CATG 5 cut(s) 301, 313, 814, 1124, 1324
HincII GTYRAC 1 cut(s) 787
HindII GTYRAC 1 cut(s) 787
HinfI GANTC 3 cut(s) 80, 677, 904
HpaI GTTAAC 1 cut(s) 787
HpaII CCGG 8 cut(s) 224, 323, 477, 486, 523, 801, 1184, 1198
HphI GGTGA 3 cut(s) 312, 364, 1058
Hpy166II GTNNAC 3 cut(s) 554, 787, 923
Hpy188I TCNGA 6 cut(s) 187, 208, 280, 387, 400, 1342
Hpy188III TCNNGA 4 cut(s) 132, 648, 752, 811
Hpy8I GTNNAC 3 cut(s) 554, 787, 923
Hpy99I CGWCG 2 cut(s) 146, 410
HpyAV CCTTC 2 cut(s) 447, 871
HpyCH4III ACNGT 5 cut(s) 200, 380, 428, 502, 1249
HpyCH4IV ACGT 6 cut(s) 53, 100, 210, 304, 457, 789
HpyCH4V TGCA 7 cut(s) 554, 563, 623, 731, 854, 993, 1278
HpyF3I CTNAG 3 cut(s) 315, 636, 1110
HpySE526I ACGT 6 cut(s) 53, 100, 210, 304, 457, 789
Hsp92I GRCGYC 1 cut(s) 210
Hsp92II CATG 5 cut(s) 301, 313, 814, 1124, 1324
KspAI GTTAAC 1 cut(s) 787
KspI CCGCGG 2 cut(s) 606, 684
Kzo9I GATC 7 cut(s) 4, 189, 387, 748, 1048, 1071, 1297
LmnI GCTCC 2 cut(s) 743, 848
Lsp1109I GCAGC 8 cut(s) 586, 598, 607, 635, 715, 814, 817, 838
LweI GCATC 1 cut(s) 252
MaeI CTAG 1 cut(s) 1007
MaeII ACGT 6 cut(s) 53, 100, 210, 304, 457, 789
MaeIII GTNAC 3 cut(s) 96, 211, 318
MalI GATC 7 cut(s) 6, 191, 389, 750, 1050, 1073, 1299
MboI GATC 7 cut(s) 4, 189, 387, 748, 1048, 1071, 1297
MflI RGATCY 1 cut(s) 189
MhlI GDGCHC 3 cut(s) 437, 556, 759
MlsI TGGCCA 1 cut(s) 668
MluCI AATT 7 cut(s) 419, 857, 976, 1001, 1022, 1222, 1268
MluI ACGCGT 1 cut(s) 548
MluNI TGGCCA 1 cut(s) 668
MlyI GAGTC 1 cut(s) 671
MmeI TCCRAC 2 cut(s) 74, 423
Mox20I TGGCCA 1 cut(s) 668
MscI TGGCCA 1 cut(s) 668
MseI TTAA 9 cut(s) 57, 290, 414, 444, 786, 860, 1029, 1080, 1173
MslI CAYNNNNRTG 2 cut(s) 218, 456
Msp20I TGGCCA 1 cut(s) 668
MspA1I CMGCKG 3 cut(s) 605, 683, 827
MspI CCGG 8 cut(s) 224, 323, 477, 486, 523, 801, 1184, 1198
MspR9I CCNGG 3 cut(s) 477, 1194, 1199
MssI GTTTAAAC 1 cut(s) 58
MvaI CCWGG 1 cut(s) 1194
MvnI CGCG 6 cut(s) 146, 550, 575, 605, 683, 698
NciI CCSGG 2 cut(s) 477, 1199
NdeII GATC 7 cut(s) 4, 189, 387, 748, 1048, 1071, 1297
NheI GCTAGC 1 cut(s) 1006
NlaIII CATG 5 cut(s) 301, 313, 814, 1124, 1324
NlaIV GGNNCC 3 cut(s) 222, 481, 1132
NmuCI GTSAC 3 cut(s) 96, 211, 318
NspI RCATGY 1 cut(s) 1124
OliI CACNNNNGTG 2 cut(s) 218, 456
PaeR7I CTCGAG 1 cut(s) 1208
PagI TCATGA 1 cut(s) 810
PciI ACATGT 1 cut(s) 1120
PfeI GAWTC 2 cut(s) 80, 904
PleI GAGTC 1 cut(s) 671
PmeI GTTTAAAC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 671
Ppu21I YACGTR 2 cut(s) 101, 458
PscI ACATGT 1 cut(s) 1120
PshBI ATTAAT 1 cut(s) 1080
Psp1406I AACGTT 2 cut(s) 53, 789
Psp6I CCWGG 1 cut(s) 1192
PspFI CCCAGC 1 cut(s) 1127
PspGI CCWGG 1 cut(s) 1192
PspN4I GGNNCC 3 cut(s) 222, 481, 1132
PspPI GGNCC 2 cut(s) 520, 1131
PspXI VCTCGAGB 1 cut(s) 1208
PstI CTGCAG 2 cut(s) 625, 733
PstNI CAGNNNCTG 1 cut(s) 629
PsuI RGATCY 1 cut(s) 189
RsaI GTAC 2 cut(s) 103, 922
RsaNI GTAC 2 cut(s) 102, 921
RseI CAYNNNNRTG 2 cut(s) 218, 456
SacII CCGCGG 2 cut(s) 606, 684
SaqAI TTAA 9 cut(s) 57, 290, 414, 444, 786, 860, 1029, 1080, 1173
Sau3AI GATC 7 cut(s) 4, 189, 387, 748, 1048, 1071, 1297
Sau96I GGNCC 2 cut(s) 520, 1131
SchI GAGTC 1 cut(s) 671
ScrFI CCNGG 3 cut(s) 477, 1194, 1199
SduI GDGCHC 3 cut(s) 437, 556, 759
SfaNI GCATC 1 cut(s) 252
SfcI CTRYAG 5 cut(s) 585, 621, 729, 909, 969
Sfr274I CTCGAG 1 cut(s) 1208
Sfr303I CCGCGG 2 cut(s) 606, 684
SgrBI CCGCGG 2 cut(s) 606, 684
SinI GGWCC 2 cut(s) 520, 1131
SlaI CTCGAG 1 cut(s) 1208
SmiMI CAYNNNNRTG 2 cut(s) 218, 456
SmlI CTYRAG 1 cut(s) 1208
SmoI CTYRAG 1 cut(s) 1208
Sse9I AATT 7 cut(s) 419, 857, 976, 1001, 1022, 1222, 1268
SspI AATATT 1 cut(s) 1101
SspMI CTAG 1 cut(s) 1007
StyD4I CCNGG 3 cut(s) 475, 1192, 1197
TaaI ACNGT 5 cut(s) 200, 380, 428, 502, 1249
TaiI ACGT 6 cut(s) 56, 103, 213, 307, 460, 792
TaqI TCGA 5 cut(s) 405, 641, 1070, 1209, 1272
TasI AATT 7 cut(s) 419, 857, 976, 1001, 1022, 1222, 1268
TauI GCSGC 7 cut(s) 172, 578, 605, 698, 713, 827, 899
TfiI GAWTC 2 cut(s) 80, 904
Tru1I TTAA 9 cut(s) 57, 290, 414, 444, 786, 860, 1029, 1080, 1173
Tru9I TTAA 9 cut(s) 57, 290, 414, 444, 786, 860, 1029, 1080, 1173
TscAI CASTG 1 cut(s) 634
TseFI GTSAC 3 cut(s) 96, 211, 318
TseI GCWGC 8 cut(s) 599, 611, 620, 623, 728, 827, 830, 851
Tsp45I GTSAC 3 cut(s) 96, 211, 318
TspDTI ATGAA 4 cut(s) 246, 321, 453, 1043
TspGWI ACGGA 1 cut(s) 757
TspRI CASTG 1 cut(s) 634
VneI GTGCAC 1 cut(s) 552
VpaK11BI GGWCC 2 cut(s) 520, 1131
VspI ATTAAT 1 cut(s) 1080
XapI RAATTY 2 cut(s) 1222, 1268
XceI RCATGY 1 cut(s) 1124
XhoI CTCGAG 1 cut(s) 1208
XspI CTAG 1 cut(s) 1007
ZraI GACGTC 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.