Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007891

Physical Location & Seq

Genomic Coordinates Reverse (-)

8355238 .. 8356393

Gene Structure 1156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G23360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGGCTTCTTAGATCTCCCTTTCATGCTCAAGGCGTTCCGGTTTAGAAGACTTGTAGTTGAAGATGGGAAGAGAAGGAAGAAGAAGAAACCATTATGGTTAACTCCGGTTTCTCATGGATACTATACGGTTGACCGGTTAAGCTATGCCGACAATTCATCGAATGATGATTCGGTTTTTGTTCAGAGAGAGCAACAAAGTGATGAGCTTGAGATTTGGTTATTTGGAGTCTCAAATGCTGGAACAGGGAAAGAGATTGTCAAATATATGCAAAACCATCTATTTGATAAGCTCCCCAATGAGCTCGGGATTATGAGAAAGTGTAAAGAGACTATGAGAAGAGCGTACGTTGAGGAAGAGAGAACCGGTGGCTCAGCCGCTTCGGTTATGGTGGTGAACGGAGAGAAGCTAGCTATAGCGAGTATTGGGGACCATAGAGTAGTGGTTTGCAAAGATGGTGAGGCTCATCAAATCAGAGATAGGAAAGCCTCAACAAAACATTGGTCACAATTTATTTTCCCTGTTTGTAATCAAGGAGAAGAAGAAGATGAATCAGATCCAAGAAATTCAGAGCTTGTAGTGATTACAGAAAAGATTAATTCAGATACAGAATTTATCATTATCGGTAGCCCCGGGATTTGGGAGGTGATGAAGAGTCAAGAAGCGATTAACCTAATAAGACACATAGAGGATCCTAAAGAAGCTGCAAAATGTTTAGCTAAAGAAGCTTTAAACAGGATTAGCAAAAGCAGCATTTCTTGCGTTGTAATTCGGTTTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 map04011

Pfam Domains

Protein Families

PP2C

Protein Analysis

260

Amino Acids

29.61

Weight (kDa)

7.02

Isoelectric Point (pI)

44.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	47 - 167	9.6e-07	Protein phosphatase 2C
PP2C	PF00481	194 - 251	9.3e-10	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23360
fragaria_vesca	FvH4_4g03890 FvH4_4g03890 FvH4_4g03890 FvH4_4g03890
malus_domestica	MD13G1215600.v1.1 MD16G1220800.v1.1
prunus_persica	Prupe.1G041200_v2.0.a1 Prupe.1G041200_v2.0.a1
pyrus_communis	pycom13g18910 pycom16g18520
rosa_chinensis	RchiOBHm_Chr4g0393921
rosa_laevigata	RLG00000009727
rosa_multiflora	Rmu_sc0000928.1_g000036
rosa_roxburghii	Rroxscaffold_5G00338990
rosa_rugosa	Rorug03G0370700.1 Rorug03G0370800 Rorug03G0370900.1 Rorug03G0371000.1
rosa_samantha	Rh4AG049500 Rh4BG045900 Rh4CG053000 Rh4DG046500
rosa_wichuraiana	Rw4G003920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	378
AclWI	GGATC	3 cut(s)	551, 686, 699
AcsI	RAATTY	2 cut(s)	565, 611
AfaI	GTAC	1 cut(s)	347
AfiI	CCNNNNNNNGG	1 cut(s)	639
AgeI	ACCGGT	2 cut(s)	135, 365
AgsI	TTSAA	1 cut(s)	62
Alw21I	GWGCWC	1 cut(s)	306
Alw26I	GTCTC	2 cut(s)	235, 323
AlwI	GGATC	3 cut(s)	551, 686, 699
Ama87I	CYCGRG	2 cut(s)	305, 632
ApeKI	GCWGC	2 cut(s)	704, 750
ApoI	RAATTY	2 cut(s)	565, 611
ArsI	GACNNNNNNTTYG	2 cut(s)	488, 520
AseI	ATTAAT	1 cut(s)	597
AsiGI	ACCGGT	2 cut(s)	135, 365
AspS9I	GGNCC	1 cut(s)	430
AsuC2I	CCSGG	2 cut(s)	633, 634
AsuHPI	GGTGA	3 cut(s)	406, 470, 658
AsuNHI	GCTAGC	1 cut(s)	409
AvaI	CYCGRG	2 cut(s)	305, 632
AvaII	GGWCC	1 cut(s)	430
BamHI	GGATCC	1 cut(s)	691
BanII	GRGCYC	1 cut(s)	306
BbsI	GAAGAC	1 cut(s)	55
Bbv12I	GWGCWC	1 cut(s)	306
BbvI	GCAGC	2 cut(s)	691, 762
BccI	CCATC	3 cut(s)	59, 285, 449
BciVI	GTATCC	1 cut(s)	113
BcnI	CCSGG	2 cut(s)	633, 634
BcoDI	GTCTC	2 cut(s)	235, 323
BfaI	CTAG	1 cut(s)	410
BfmI	CTRYAG	1 cut(s)	414
BfuI	GTATCC	1 cut(s)	113
BglII	AGATCT	1 cut(s)	13
BisI	GCNGC	3 cut(s)	378, 705, 751
BlpI	GCTNAGC	1 cut(s)	373
BlsI	GCNGC	3 cut(s)	379, 706, 752
Bme1390I	CCNGG	2 cut(s)	633, 634
Bme18I	GGWCC	1 cut(s)	430
BmeT110I	CYCGRG	2 cut(s)	305, 632
BmgT120I	GGNCC	1 cut(s)	430
BmiI	GGNNCC	2 cut(s)	431, 693
BmrFI	CCNGG	2 cut(s)	633, 634
BmtI	GCTAGC	1 cut(s)	413
BpiI	GAAGAC	1 cut(s)	55
Bpu1102I	GCTNAGC	1 cut(s)	373
BpuEI	CTTGAG	2 cut(s)	14, 230
BpuMI	CCSGG	2 cut(s)	633, 634
BsaJI	CCNNGG	2 cut(s)	631, 632
BsaWI	WCCGGW	4 cut(s)	39, 106, 135, 365
Bsc4I	CCNNNNNNNGG	1 cut(s)	639
Bse118I	RCCGGY	2 cut(s)	135, 365
BseDI	CCNNGG	2 cut(s)	631, 632
BseLI	CCNNNNNNNGG	1 cut(s)	639
BseMII	CTCAG	1 cut(s)	387
BseXI	GCAGC	2 cut(s)	691, 762
BshTI	ACCGGT	2 cut(s)	135, 365
BsiHKAI	GWGCWC	1 cut(s)	306
BsiHKCI	CYCGRG	2 cut(s)	305, 632
BsiSI	CCGG	5 cut(s)	40, 107, 136, 366, 633
BsiWI	CGTACG	1 cut(s)	345
BslFI	GGGAC	1 cut(s)	443
BslI	CCNNNNNNNGG	1 cut(s)	639
BsmAI	GTCTC	2 cut(s)	235, 323
BsmFI	GGGAC	1 cut(s)	443
BsoBI	CYCGRG	2 cut(s)	305, 632
Bsp1286I	GDGCHC	1 cut(s)	306
Bsp143I	GATC	3 cut(s)	13, 556, 691
Bsp1720I	GCTNAGC	1 cut(s)	373
BspACI	CCGC	1 cut(s)	378
BspCNI	CTCAG	1 cut(s)	386
BspLI	GGNNCC	2 cut(s)	431, 693
BspOI	GCTAGC	1 cut(s)	413
BspPI	GGATC	3 cut(s)	551, 686, 699
BspQI	GCTCTTC	1 cut(s)	334
BsrFI	RCCGGY	2 cut(s)	135, 365
BssAI	RCCGGY	2 cut(s)	135, 365
BssECI	CCNNGG	2 cut(s)	631, 632
BssMI	GATC	3 cut(s)	13, 556, 691
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	4 cut(s)	65, 334, 351, 647
BstAPI	GCANNNNNTGC	1 cut(s)	759
BstC8I	GCNNGC	1 cut(s)	411
BstDEI	CTNAG	2 cut(s)	10, 373
BstKTI	GATC	3 cut(s)	16, 559, 694
BstMAI	GTCTC	2 cut(s)	235, 323
BstMBI	GATC	3 cut(s)	13, 556, 691
BstMWI	GCNNNNNNNGC	3 cut(s)	725, 750, 759
BstSCI	CCNGG	2 cut(s)	631, 632
BstSFI	CTRYAG	1 cut(s)	414
BstV1I	GCAGC	2 cut(s)	691, 762
BstV2I	GAAGAC	1 cut(s)	55
BstX2I	RGATCY	3 cut(s)	13, 556, 691
BstYI	RGATCY	3 cut(s)	13, 556, 691
BsuI	GTATCC	1 cut(s)	113
Cac8I	GCNNGC	1 cut(s)	411
Cfr10I	RCCGGY	2 cut(s)	135, 365
Cfr13I	GGNCC	1 cut(s)	430
Cfr9I	CCCGGG	1 cut(s)	632
Csp6I	GTAC	1 cut(s)	346
CspAI	ACCGGT	2 cut(s)	135, 365
CviAII	CATG	2 cut(s)	25, 116
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	2 cut(s)	10, 373
DpnI	GATC	3 cut(s)	15, 558, 693
DpnII	GATC	3 cut(s)	13, 556, 691
DraI	TTTAAA	1 cut(s)	732
Eam1104I	CTCTTC	4 cut(s)	65, 334, 351, 647
EarI	CTCTTC	4 cut(s)	65, 334, 351, 647
Ecl136II	GAGCTC	1 cut(s)	304
Eco24I	GRGCYC	1 cut(s)	306
Eco47I	GGWCC	1 cut(s)	430
Eco53kI	GAGCTC	1 cut(s)	304
Eco88I	CYCGRG	2 cut(s)	305, 632
EcoICRI	GAGCTC	1 cut(s)	304
EcoT38I	GRGCYC	1 cut(s)	306
FaeI	CATG	2 cut(s)	28, 119
FaqI	GGGAC	1 cut(s)	443
FatI	CATG	2 cut(s)	24, 115
Fnu4HI	GCNGC	3 cut(s)	378, 705, 751
FriOI	GRGCYC	1 cut(s)	306
Fsp4HI	GCNGC	3 cut(s)	378, 705, 751
FspBI	CTAG	1 cut(s)	410
GluI	GCNGC	3 cut(s)	378, 705, 751
HapII	CCGG	5 cut(s)	40, 107, 136, 366, 633
Hin1II	CATG	2 cut(s)	28, 119
HincII	GTYRAC	2 cut(s)	102, 133
HindII	GTYRAC	2 cut(s)	102, 133
HindIII	AAGCTT	1 cut(s)	726
HinfI	GANTC	4 cut(s)	170, 228, 551, 655
HpaI	GTTAAC	1 cut(s)	102
HpaII	CCGG	5 cut(s)	40, 107, 136, 366, 633
HphI	GGTGA	3 cut(s)	406, 470, 658
Hpy166II	GTNNAC	3 cut(s)	102, 133, 397
Hpy188I	TCNGA	5 cut(s)	186, 476, 556, 571, 604
Hpy188III	TCNNGA	2 cut(s)	307, 659
Hpy8I	GTNNAC	3 cut(s)	102, 133, 397
HpyAV	CCTTC	1 cut(s)	69
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	3 cut(s)	271, 450, 707
HpyF10VI	GCNNNNNNNGC	3 cut(s)	725, 750, 759
HpyF3I	CTNAG	2 cut(s)	10, 373
HpySE526I	ACGT	1 cut(s)	348
Hsp92II	CATG	2 cut(s)	28, 119
KspAI	GTTAAC	1 cut(s)	102
Kzo9I	GATC	3 cut(s)	13, 556, 691
LguI	GCTCTTC	1 cut(s)	334
LmnI	GCTCC	1 cut(s)	297
LpnPI	CCDG	9 cut(s)	53, 120, 149, 225, 231, 379, 534, 646, 721
Lsp1109I	GCAGC	2 cut(s)	691, 762
MaeI	CTAG	1 cut(s)	410
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	1 cut(s)	504
MalI	GATC	3 cut(s)	15, 558, 693
MboI	GATC	3 cut(s)	13, 556, 691
MflI	RGATCY	3 cut(s)	13, 556, 691
MhlI	GDGCHC	1 cut(s)	306
MluCI	AATT	6 cut(s)	154, 509, 565, 598, 611, 768
MlyI	GAGTC	2 cut(s)	237, 664
MnlI	CCTC	5 cut(s)	346, 454, 499, 637, 682
MseI	TTAA	5 cut(s)	101, 140, 597, 669, 731
MspI	CCGG	5 cut(s)	40, 107, 136, 366, 633
MspR9I	CCNGG	2 cut(s)	633, 634
MwoI	GCNNNNNNNGC	3 cut(s)	725, 750, 759
NciI	CCSGG	2 cut(s)	633, 634
NdeII	GATC	3 cut(s)	13, 556, 691
NheI	GCTAGC	1 cut(s)	409
NlaIII	CATG	2 cut(s)	28, 119
NlaIV	GGNNCC	2 cut(s)	431, 693
NmuCI	GTSAC	1 cut(s)	504
PciSI	GCTCTTC	1 cut(s)	334
PfeI	GAWTC	2 cut(s)	170, 551
Pfl23II	CGTACG	1 cut(s)	345
PinAI	ACCGGT	2 cut(s)	135, 365
PkrI	GCNGC	3 cut(s)	379, 706, 752
PleI	GAGTC	2 cut(s)	236, 663
PpsI	GAGTC	2 cut(s)	236, 663
PshBI	ATTAAT	1 cut(s)	597
Psp124BI	GAGCTC	1 cut(s)	306
PspLI	CGTACG	1 cut(s)	345
PspN4I	GGNNCC	2 cut(s)	431, 693
PspPI	GGNCC	1 cut(s)	430
PsuI	RGATCY	3 cut(s)	13, 556, 691
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
SacI	GAGCTC	1 cut(s)	306
SapI	GCTCTTC	1 cut(s)	334
SaqAI	TTAA	5 cut(s)	101, 140, 597, 669, 731
SatI	GCNGC	3 cut(s)	378, 705, 751
Sau3AI	GATC	3 cut(s)	13, 556, 691
Sau96I	GGNCC	1 cut(s)	430
SchI	GAGTC	2 cut(s)	237, 664
ScrFI	CCNGG	2 cut(s)	633, 634
SduI	GDGCHC	1 cut(s)	306
SfcI	CTRYAG	1 cut(s)	414
SinI	GGWCC	1 cut(s)	430
SmaI	CCCGGG	1 cut(s)	634
SmlI	CTYRAG	2 cut(s)	29, 209
SmoI	CTYRAG	2 cut(s)	29, 209
Sse9I	AATT	6 cut(s)	154, 509, 565, 598, 611, 768
SsiI	CCGC	1 cut(s)	378
SspMI	CTAG	1 cut(s)	410
SstI	GAGCTC	1 cut(s)	306
StyD4I	CCNGG	2 cut(s)	631, 632
TaaI	ACNGT	1 cut(s)	130
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	1 cut(s)	161
TasI	AATT	6 cut(s)	154, 509, 565, 598, 611, 768
TauI	GCSGC	1 cut(s)	380
TfiI	GAWTC	2 cut(s)	170, 551
Tru1I	TTAA	5 cut(s)	101, 140, 597, 669, 731
Tru9I	TTAA	5 cut(s)	101, 140, 597, 669, 731
TseFI	GTSAC	1 cut(s)	504
TseI	GCWGC	2 cut(s)	704, 750
Tsp45I	GTSAC	1 cut(s)	504
TspDTI	ATGAA	4 cut(s)	13, 147, 564, 665
TspGWI	ACGGA	1 cut(s)	414
TspMI	CCCGGG	1 cut(s)	632
VpaK11BI	GGWCC	1 cut(s)	430
VspI	ATTAAT	1 cut(s)	597
XapI	RAATTY	2 cut(s)	565, 611
XmaI	CCCGGG	1 cut(s)	632
XspI	CTAG	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.