Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0007891

Physical Location & Seq

Genomic Coordinates Forward (+)

45410875 .. 45411342

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0370800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCAGGGGGCAATGATACTTTGAAGGAGAGAGTGGCAAGGGTAGAGGAAGTCGTTCAAGTGGAACAATTGAAGCAAGAATTGGCATCATTGCGTGTTGCATTTGATGGCCACATCCACGAGGTGGAAGAAAAGATGGAGACGTCCATCCATGAGATCGAAGCCCTTTCGCAAGAGGCGGAGGCAATGTTTGGGGTTCTTGATGCCGACATTGGACTGCTAAAGCGCGCTAGCATCAATGAAGGTGGGACGAGCACAAGAGGTGGCGTGCCCAATATCAAGGTACCGAAACCAAAGTCATTCCTAGGAGCGAGGAATGCCAAGGAGTTAGAGAACTTCTTGTGGGACATGGAGCAGTATTTCAAGGCTGTTCATGTCGATGTCGACGAGAAGGTGGCCATGACAAGCATGTATCTTATGGGTGATGCTAAGTGTCACGAGCCGCACTTAAGAGTAGTGCTATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 map04011

Pfam Domains

Protein Families

PP2C

Protein Analysis

155

Amino Acids

17.26

Weight (kDa)

5.15

Isoelectric Point (pI)

41.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23360
fragaria_vesca	FvH4_4g03890 FvH4_4g03890 FvH4_4g03890 FvH4_4g03890
malus_domestica	MD13G1215600.v1.1 MD16G1220800.v1.1
prunus_persica	Prupe.1G041200_v2.0.a1 Prupe.1G041200_v2.0.a1
pyrus_communis	pycom13g18910 pycom16g18520
rosa_chinensis	RchiOBHm_Chr4g0393921
rosa_laevigata	RLG00000009727
rosa_multiflora	Rmu_sc0000928.1_g000036
rosa_roxburghii	Rroxscaffold_5G00338990
rosa_rugosa	Rorug03G0370700.1 Rorug03G0370800 Rorug03G0370900.1 Rorug03G0371000.1
rosa_samantha	Rh4AG049500 Rh4BG045900 Rh4CG053000 Rh4DG046500
rosa_wichuraiana	Rw4G003920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	146
Acc65I	GGTACC	1 cut(s)	283
AccB1I	GGYRCC	1 cut(s)	283
AccB7I	CCANNNNNTGG	1 cut(s)	124
AccI	GTMKAC	1 cut(s)	384
AccII	CGCG	1 cut(s)	228
AciI	CCGC	2 cut(s)	179, 443
AcoI	YGGCCR	2 cut(s)	109, 396
AcyI	GRCGYC	1 cut(s)	143
AdeI	CACNNNGTG	1 cut(s)	124
AfaI	GTAC	1 cut(s)	285
AfiI	CCNNNNNNNGG	1 cut(s)	124
AflII	CTTAAG	1 cut(s)	448
AgsI	TTSAA	4 cut(s)	25, 59, 73, 364
AjuI	GAANNNNNNNTTGG	2 cut(s)	65, 97
Alw21I	GWGCWC	1 cut(s)	257
Alw26I	GTCTC	1 cut(s)	134
AoxI	GGCC	2 cut(s)	109, 396
ArsI	GACNNNNNNTTYG	2 cut(s)	281, 313
Asp700I	GAANNNNTTC	1 cut(s)	54
Asp718I	GGTACC	1 cut(s)	283
AspA2I	CCTAGG	1 cut(s)	304
AspLEI	GCGC	2 cut(s)	228, 230
AsuHPI	GGTGA	1 cut(s)	434
AsuNHI	GCTAGC	1 cut(s)	230
AvrII	CCTAGG	1 cut(s)	304
BaeGI	GKGCMC	1 cut(s)	273
BalI	TGGCCA	2 cut(s)	111, 398
BanI	GGYRCC	1 cut(s)	283
BauI	CACGAG	2 cut(s)	119, 437
Bbv12I	GWGCWC	1 cut(s)	257
BccI	CCATC	3 cut(s)	101, 130, 155
BcoDI	GTCTC	1 cut(s)	134
BfaI	CTAG	2 cut(s)	231, 305
BfrI	CTTAAG	1 cut(s)	448
BisI	GCNGC	1 cut(s)	443
BlnI	CCTAGG	1 cut(s)	304
BlsI	GCNGC	1 cut(s)	444
BmiI	GGNNCC	1 cut(s)	285
BmsI	GCATC	4 cut(s)	95, 193, 243, 415
BmtI	GCTAGC	1 cut(s)	234
BsaHI	GRCGYC	1 cut(s)	143
BsaJI	CCNNGG	2 cut(s)	304, 321
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse3DI	GCAATG	3 cut(s)	19, 89, 192
BseDI	CCNNGG	2 cut(s)	304, 321
BseGI	GGATG	2 cut(s)	114, 147
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMI	GCAATG	3 cut(s)	19, 89, 192
BsePI	GCGCGC	1 cut(s)	226
BseSI	GKGCMC	1 cut(s)	273
Bsh1236I	CGCG	1 cut(s)	228
BshFI	GGCC	2 cut(s)	111, 398
BshNI	GGYRCC	1 cut(s)	283
BsiHKAI	GWGCWC	1 cut(s)	257
BslFI	GGGAC	2 cut(s)	262, 359
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmAI	GTCTC	1 cut(s)	134
BsmBI	CGTCTC	1 cut(s)	134
BsmFI	GGGAC	2 cut(s)	262, 359
BsmI	GAATGC	1 cut(s)	322
BsnI	GGCC	2 cut(s)	111, 398
Bsp1286I	GDGCHC	2 cut(s)	257, 273
Bsp143I	GATC	1 cut(s)	156
BspACI	CCGC	2 cut(s)	179, 443
BspANI	GGCC	2 cut(s)	111, 398
BspFNI	CGCG	1 cut(s)	228
BspHI	TCATGA	1 cut(s)	464
BspLI	GGNNCC	1 cut(s)	285
BspOI	GCTAGC	1 cut(s)	234
BspT107I	GGYRCC	1 cut(s)	283
BspTI	CTTAAG	1 cut(s)	448
BsrDI	GCAATG	3 cut(s)	19, 89, 192
BssECI	CCNNGG	2 cut(s)	304, 321
BssHII	GCGCGC	1 cut(s)	226
BssMI	GATC	1 cut(s)	156
BssNI	GRCGYC	1 cut(s)	143
BssSI	CACGAG	2 cut(s)	119, 437
BssT1I	CCWWGG	2 cut(s)	304, 321
Bst2BI	CACGAG	2 cut(s)	119, 437
BstACI	GRCGYC	1 cut(s)	143
BstAFI	CTTAAG	1 cut(s)	448
BstC8I	GCNNGC	3 cut(s)	228, 232, 269
BstDEI	CTNAG	1 cut(s)	429
BstF5I	GGATG	2 cut(s)	114, 147
BstFNI	CGCG	1 cut(s)	228
BstHHI	GCGC	2 cut(s)	228, 230
BstKTI	GATC	1 cut(s)	159
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	1 cut(s)	156
BstMWI	GCNNNNNNNGC	1 cut(s)	317
BstNSI	RCATGY	1 cut(s)	412
BstSLI	GKGCMC	1 cut(s)	273
BstUI	CGCG	1 cut(s)	228
BsuRI	GGCC	2 cut(s)	111, 398
BtsCI	GGATG	2 cut(s)	114, 147
Cac8I	GCNNGC	3 cut(s)	228, 232, 269
CciI	TCATGA	1 cut(s)	464
CfoI	GCGC	2 cut(s)	228, 230
Csp6I	GTAC	1 cut(s)	284
CspCI	CAANNNNNGTGG	2 cut(s)	226, 261
CviAII	CATG	6 cut(s)	152, 349, 374, 400, 409, 465
CviJI	RGCY	5 cut(s)	111, 164, 368, 398, 442
CviKI_1	RGCY	5 cut(s)	111, 164, 368, 398, 442
CviQI	GTAC	1 cut(s)	284
DdeI	CTNAG	1 cut(s)	429
DpnI	GATC	1 cut(s)	158
DpnII	GATC	1 cut(s)	156
DraIII	CACNNNGTG	1 cut(s)	124
EaeI	YGGCCR	2 cut(s)	109, 396
EciI	GGCGGA	1 cut(s)	194
Eco130I	CCWWGG	2 cut(s)	304, 321
EcoT14I	CCWWGG	2 cut(s)	304, 321
ErhI	CCWWGG	2 cut(s)	304, 321
Esp3I	CGTCTC	1 cut(s)	134
FaeI	CATG	6 cut(s)	155, 352, 377, 403, 412, 468
FaiI	YATR	7 cut(s)	153, 350, 375, 401, 410, 419, 466
FaqI	GGGAC	2 cut(s)	262, 359
FatI	CATG	6 cut(s)	151, 348, 373, 399, 408, 464
FblI	GTMKAC	1 cut(s)	384
Fnu4HI	GCNGC	1 cut(s)	443
FokI	GGATG	2 cut(s)	101, 134
Fsp4HI	GCNGC	1 cut(s)	443
FspBI	CTAG	2 cut(s)	231, 305
GlaI	GCGC	2 cut(s)	227, 229
GluI	GCNGC	1 cut(s)	443
HaeIII	GGCC	2 cut(s)	111, 398
HhaI	GCGC	2 cut(s)	228, 230
Hin1I	GRCGYC	1 cut(s)	143
Hin1II	CATG	6 cut(s)	155, 352, 377, 403, 412, 468
Hin6I	GCGC	2 cut(s)	226, 228
HinP1I	GCGC	2 cut(s)	226, 228
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HphI	GGTGA	1 cut(s)	434
Hpy166II	GTNNAC	1 cut(s)	385
Hpy188III	TCNNGA	3 cut(s)	200, 437, 465
Hpy8I	GTNNAC	1 cut(s)	385
Hpy99I	CGWCG	1 cut(s)	389
HpyAV	CCTTC	3 cut(s)	19, 236, 385
HpyCH4IV	ACGT	1 cut(s)	143
HpyCH4V	TGCA	1 cut(s)	101
HpyF10VI	GCNNNNNNNGC	1 cut(s)	317
HpyF3I	CTNAG	1 cut(s)	429
HpySE526I	ACGT	1 cut(s)	143
Hsp92I	GRCGYC	1 cut(s)	143
Hsp92II	CATG	6 cut(s)	155, 352, 377, 403, 412, 468
HspAI	GCGC	2 cut(s)	226, 228
KpnI	GGTACC	1 cut(s)	287
Kzo9I	GATC	1 cut(s)	156
LmnI	GCTCC	2 cut(s)	308, 352
LweI	GCATC	4 cut(s)	95, 193, 243, 415
MaeI	CTAG	2 cut(s)	231, 305
MaeII	ACGT	1 cut(s)	143
MaeIII	GTNAC	1 cut(s)	434
MalI	GATC	1 cut(s)	158
MboI	GATC	1 cut(s)	156
MboII	GAAGA	1 cut(s)	140
MfeI	CAATTG	1 cut(s)	68
MhlI	GDGCHC	2 cut(s)	257, 273
MlsI	TGGCCA	2 cut(s)	111, 398
MluCI	AATT	2 cut(s)	68, 80
MluNI	TGGCCA	2 cut(s)	111, 398
MnlI	CCTC	6 cut(s)	40, 115, 169, 175, 254, 306
Mox20I	TGGCCA	2 cut(s)	111, 398
MroXI	GAANNNNTTC	1 cut(s)	54
MscI	TGGCCA	2 cut(s)	111, 398
MseI	TTAA	1 cut(s)	449
MslI	CAYNNNNRTG	1 cut(s)	378
Msp20I	TGGCCA	2 cut(s)	111, 398
MspCI	CTTAAG	1 cut(s)	448
MunI	CAATTG	1 cut(s)	68
Mva1269I	GAATGC	1 cut(s)	322
MvnI	CGCG	1 cut(s)	228
MwoI	GCNNNNNNNGC	1 cut(s)	317
NdeII	GATC	1 cut(s)	156
NheI	GCTAGC	1 cut(s)	230
NlaIII	CATG	6 cut(s)	155, 352, 377, 403, 412, 468
NlaIV	GGNNCC	1 cut(s)	285
NmuCI	GTSAC	1 cut(s)	434
NspI	RCATGY	1 cut(s)	412
PagI	TCATGA	1 cut(s)	464
PauI	GCGCGC	1 cut(s)	226
PcsI	WCGNNNNNNNCGW	1 cut(s)	384
PctI	GAATGC	1 cut(s)	322
PdmI	GAANNNNTTC	1 cut(s)	54
PflMI	CCANNNNNTGG	1 cut(s)	124
PkrI	GCNGC	1 cut(s)	444
PspN4I	GGNNCC	1 cut(s)	285
PteI	GCGCGC	1 cut(s)	226
RsaI	GTAC	1 cut(s)	285
RsaNI	GTAC	1 cut(s)	284
RseI	CAYNNNNRTG	1 cut(s)	378
SalI	GTCGAC	1 cut(s)	383
SaqAI	TTAA	1 cut(s)	449
SatI	GCNGC	1 cut(s)	443
Sau3AI	GATC	1 cut(s)	156
SduI	GDGCHC	2 cut(s)	257, 273
SetI	ASST	6 cut(s)	126, 146, 247, 265, 285, 396
SfaNI	GCATC	4 cut(s)	95, 193, 243, 415
SmiMI	CAYNNNNRTG	1 cut(s)	378
SmlI	CTYRAG	1 cut(s)	448
SmoI	CTYRAG	1 cut(s)	448
Sse9I	AATT	2 cut(s)	68, 80
SsiI	CCGC	2 cut(s)	179, 443
SspMI	CTAG	2 cut(s)	231, 305
StyI	CCWWGG	2 cut(s)	304, 321
TaiI	ACGT	1 cut(s)	146
TaqI	TCGA	3 cut(s)	159, 378, 384
TasI	AATT	2 cut(s)	68, 80
TauI	GCSGC	1 cut(s)	445
Tru1I	TTAA	1 cut(s)	449
Tru9I	TTAA	1 cut(s)	449
TseFI	GTSAC	1 cut(s)	434
Tsp45I	GTSAC	1 cut(s)	434
TspDTI	ATGAA	2 cut(s)	255, 362
Van91I	CCANNNNNTGG	1 cut(s)	124
Vha464I	CTTAAG	1 cut(s)	448
XceI	RCATGY	1 cut(s)	412
XmaJI	CCTAGG	1 cut(s)	304
XmiI	GTMKAC	1 cut(s)	384
XmnI	GAANNNNTTC	1 cut(s)	54
XspI	CTAG	2 cut(s)	231, 305
ZraI	GACGTC	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.