Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0007891

Physical Location & Seq

Genomic Coordinates Reverse (-)

7720483 .. 7723410

Gene Structure 2928 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G003920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGGTTATTCCGTTTTTGTCATTGAACTACCATGCACTCTTCAAAATTATATCAAGTTGCGAATTCTCAAGATAAAAACTGGGGTTAAGAAGAAAGAGGCTAATTTTACTACAAAACCTTCATGGATGATGCCAGCAGTCTCACATGGGCATCATGTGGTTGAGGGTTATGATGAATTCGACTGTGACTATGTTGTGGCTCAGAGAGAGCAGATTGAAGAGCTTGAGGTGTGGCTTTTCGGAGTTTCCGATCCTCGGATTGGGGGCGGAATTACCAAGTACATGCAGGCACATCTGTTTGATAAGAAGCCAAAAGAGTCTATCATAAAGGGAAAGAGCAACGGGACGATGAGAAAAGCATATCTTGATGCTAAAGCAAAGCTTAGAGACGCCCAGGGAACAGAGGAGACAAATGGAGTCGGTTCAGTTTCGGCAATGGTGATCAATGGTGAAAAGCTAGTATTAGCGAATATGGGAGACTACAGAGCAATTGTTTGCAGAGAGGGTTTGGCTCATGAAATAGGCATTAGGCACAAGCAATCACCCAAAATGAGTTGGACACATAGACTCTTTAAAGTTCACATTCTTATGTATCATACTGGCAATGCAGCAAACAATAAGCAATCTAAAAGCTCAGATCTTGTTGTTGGGGCTGAAAAGATTGAGAACGATATTGAATTTGTCATTTTAGCAAGCAGTGGCATATGGGAGGTGATGAAGTATCAAGAGGCTGTGAATCTCATAAGGCGCATTGAAAATCCAGAAATAGCTGCCGAGTGTTTGGCAAGTGAAGCTTCAAATAGAATGAGCAGAAGCAACATTTCTTGCTTGGTCATTCGATTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 map04011

Pfam Domains

Protein Families

PP2C

Protein Analysis

282

Amino Acids

31.72

Weight (kDa)

8.66

Isoelectric Point (pI)

52.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	79 - 179	5.1e-06	Protein phosphatase 2C
PP2C	PF00481	220 - 274	1.1e-09	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23360
fragaria_vesca	FvH4_4g03890 FvH4_4g03890 FvH4_4g03890 FvH4_4g03890
malus_domestica	MD13G1215600.v1.1 MD16G1220800.v1.1
prunus_persica	Prupe.1G041200_v2.0.a1 Prupe.1G041200_v2.0.a1
pyrus_communis	pycom13g18910 pycom16g18520
rosa_chinensis	RchiOBHm_Chr4g0393921
rosa_laevigata	RLG00000009727
rosa_multiflora	Rmu_sc0000928.1_g000036
rosa_roxburghii	Rroxscaffold_5G00338990
rosa_rugosa	Rorug03G0370700.1 Rorug03G0370800 Rorug03G0370900.1 Rorug03G0371000.1
rosa_samantha	Rh4AG049500 Rh4BG045900 Rh4CG053000 Rh4DG046500
rosa_wichuraiana	Rw4G003920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	267
AclWI	GGATC	1 cut(s)	245
AcsI	RAATTY	3 cut(s)	63, 176, 677
AcyI	GRCGYC	1 cut(s)	390
AfaI	GTAC	1 cut(s)	281
AfiI	CCNNNNNNNGG	2 cut(s)	255, 260
AgsI	TTSAA	6 cut(s)	26, 44, 218, 677, 755, 798
AjnI	CCWGG	1 cut(s)	393
AluBI	AGCT	6 cut(s)	223, 382, 457, 633, 770, 794
AluI	AGCT	6 cut(s)	223, 382, 457, 633, 770, 794
Alw26I	GTCTC	4 cut(s)	145, 381, 401, 471
AlwI	GGATC	1 cut(s)	245
ApeKI	GCWGC	2 cut(s)	608, 770
ApoI	RAATTY	3 cut(s)	63, 176, 677
AspLEI	GCGC	1 cut(s)	750
AsuHPI	GGTGA	4 cut(s)	451, 461, 534, 724
BbvI	GCAGC	2 cut(s)	620, 757
BciT130I	CCWGG	1 cut(s)	395
BclI	TGATCA	1 cut(s)	441
BcoDI	GTCTC	4 cut(s)	145, 381, 401, 471
BfaI	CTAG	1 cut(s)	458
BfmI	CTRYAG	1 cut(s)	481
BglII	AGATCT	1 cut(s)	637
BisI	GCNGC	2 cut(s)	609, 771
BlsI	GCNGC	2 cut(s)	610, 772
Bme1390I	CCNGG	1 cut(s)	395
BmrFI	CCNGG	1 cut(s)	395
BmrI	ACTGGG	1 cut(s)	90
BmsI	GCATC	3 cut(s)	120, 160, 358
BmuI	ACTGGG	1 cut(s)	90
BpuEI	CTTGAG	2 cut(s)	53, 245
BsaHI	GRCGYC	1 cut(s)	390
BsaJI	CCNNGG	3 cut(s)	254, 393, 394
Bsc4I	CCNNNNNNNGG	2 cut(s)	255, 260
Bse1I	ACTGG	2 cut(s)	85, 604
Bse3DI	GCAATG	2 cut(s)	441, 610
BseBI	CCWGG	1 cut(s)	395
BseDI	CCNNGG	3 cut(s)	254, 393, 394
BseGI	GGATG	1 cut(s)	132
BseLI	CCNNNNNNNGG	2 cut(s)	255, 260
BseMI	GCAATG	2 cut(s)	441, 610
BseMII	CTCAG	2 cut(s)	215, 648
BseNI	ACTGG	2 cut(s)	85, 604
BseRI	GAGGAG	1 cut(s)	419
BseXI	GCAGC	2 cut(s)	620, 757
BslFI	GGGAC	1 cut(s)	358
BslI	CCNNNNNNNGG	2 cut(s)	255, 260
BsmAI	GTCTC	4 cut(s)	145, 381, 401, 471
BsmBI	CGTCTC	1 cut(s)	381
BsmFI	GGGAC	1 cut(s)	358
Bsp143I	GATC	3 cut(s)	250, 441, 637
BspACI	CCGC	1 cut(s)	267
BspCNI	CTCAG	2 cut(s)	214, 647
BspHI	TCATGA	1 cut(s)	514
BspPI	GGATC	1 cut(s)	245
BspQI	GCTCTTC	1 cut(s)	213
BsrDI	GCAATG	2 cut(s)	441, 610
BsrI	ACTGG	2 cut(s)	85, 604
BssECI	CCNNGG	3 cut(s)	254, 393, 394
BssMI	GATC	3 cut(s)	250, 441, 637
BssNI	GRCGYC	1 cut(s)	390
Bst2UI	CCWGG	1 cut(s)	395
Bst4CI	ACNGT	1 cut(s)	185
Bst6I	CTCTTC	2 cut(s)	45, 213
BstACI	GRCGYC	1 cut(s)	390
BstC8I	GCNNGC	3 cut(s)	135, 288, 694
BstDEI	CTNAG	3 cut(s)	201, 383, 634
BstF5I	GGATG	1 cut(s)	132
BstHHI	GCGC	1 cut(s)	750
BstKTI	GATC	3 cut(s)	253, 444, 640
BstMAI	GTCTC	4 cut(s)	145, 381, 401, 471
BstMBI	GATC	3 cut(s)	250, 441, 637
BstMWI	GCNNNNNNNGC	1 cut(s)	791
BstNI	CCWGG	1 cut(s)	395
BstNSI	RCATGY	1 cut(s)	286
BstSCI	CCNGG	1 cut(s)	393
BstSFI	CTRYAG	1 cut(s)	481
BstV1I	GCAGC	2 cut(s)	620, 757
BstX2I	RGATCY	1 cut(s)	637
BstYI	RGATCY	1 cut(s)	637
BtsCI	GGATG	1 cut(s)	132
BtsI	GCAGTG	1 cut(s)	703
BtsIMutI	CAGTG	1 cut(s)	703
Cac8I	GCNNGC	3 cut(s)	135, 288, 694
CciI	TCATGA	1 cut(s)	514
CfoI	GCGC	1 cut(s)	750
CseI	GACGC	1 cut(s)	398
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	6 cut(s)	33, 123, 146, 155, 283, 515
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	3 cut(s)	201, 383, 634
DpnI	GATC	3 cut(s)	252, 443, 639
DpnII	GATC	3 cut(s)	250, 441, 637
DraI	TTTAAA	1 cut(s)	574
Eam1104I	CTCTTC	2 cut(s)	45, 213
EarI	CTCTTC	2 cut(s)	45, 213
EciI	GGCGGA	1 cut(s)	282
EcoRI	GAATTC	2 cut(s)	63, 176
EcoRII	CCWGG	1 cut(s)	393
Esp3I	CGTCTC	1 cut(s)	381
FaeI	CATG	6 cut(s)	36, 126, 149, 158, 286, 518
FalI	AAGNNNNNCTT	6 cut(s)	348, 380, 366, 398, 778, 810
FaqI	GGGAC	1 cut(s)	358
FatI	CATG	6 cut(s)	32, 122, 145, 154, 282, 514
FauNDI	CATATG	1 cut(s)	704
FbaI	TGATCA	1 cut(s)	441
Fnu4HI	GCNGC	2 cut(s)	609, 771
FokI	GGATG	1 cut(s)	139
Fsp4HI	GCNGC	2 cut(s)	609, 771
FspBI	CTAG	1 cut(s)	458
GlaI	GCGC	1 cut(s)	749
GluI	GCNGC	2 cut(s)	609, 771
HgaI	GACGC	1 cut(s)	398
HhaI	GCGC	1 cut(s)	750
Hin1I	GRCGYC	1 cut(s)	390
Hin1II	CATG	6 cut(s)	36, 126, 149, 158, 286, 518
Hin6I	GCGC	1 cut(s)	748
HinP1I	GCGC	1 cut(s)	748
HindIII	AAGCTT	2 cut(s)	380, 792
HinfI	GANTC	4 cut(s)	317, 417, 567, 736
HphI	GGTGA	4 cut(s)	451, 461, 534, 724
Hpy166II	GTNNAC	1 cut(s)	580
Hpy188I	TCNGA	5 cut(s)	204, 242, 250, 258, 637
Hpy188III	TCNNGA	5 cut(s)	70, 365, 515, 725, 761
Hpy8I	GTNNAC	1 cut(s)	580
HpyAV	CCTTC	1 cut(s)	129
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4V	TGCA	4 cut(s)	36, 286, 498, 608
HpyF10VI	GCNNNNNNNGC	1 cut(s)	791
HpyF3I	CTNAG	3 cut(s)	201, 383, 634
Hsp92I	GRCGYC	1 cut(s)	390
Hsp92II	CATG	6 cut(s)	36, 126, 149, 158, 286, 518
HspAI	GCGC	1 cut(s)	748
Ksp22I	TGATCA	1 cut(s)	441
Kzo9I	GATC	3 cut(s)	250, 441, 637
LguI	GCTCTTC	1 cut(s)	213
LpnPI	CCDG	7 cut(s)	66, 147, 272, 380, 407, 585, 774
Lsp1109I	GCAGC	2 cut(s)	620, 757
LweI	GCATC	3 cut(s)	120, 160, 358
MaeI	CTAG	1 cut(s)	458
MaeIII	GTNAC	1 cut(s)	185
MalI	GATC	3 cut(s)	252, 443, 639
MboI	GATC	3 cut(s)	250, 441, 637
MboII	GAAGA	3 cut(s)	32, 103, 230
MfeI	CAATTG	1 cut(s)	489
MflI	RGATCY	1 cut(s)	637
MluCI	AATT	7 cut(s)	46, 63, 103, 176, 270, 489, 677
MlyI	GAGTC	3 cut(s)	326, 426, 561
MmeI	TCCRAC	1 cut(s)	536
MnlI	CCTC	8 cut(s)	91, 157, 220, 264, 397, 496, 703, 721
MseI	TTAA	2 cut(s)	87, 573
MslI	CAYNNNNRTG	1 cut(s)	587
MspR9I	CCNGG	1 cut(s)	395
MunI	CAATTG	1 cut(s)	489
MvaI	CCWGG	1 cut(s)	395
MwoI	GCNNNNNNNGC	1 cut(s)	791
NdeI	CATATG	1 cut(s)	704
NdeII	GATC	3 cut(s)	250, 441, 637
NlaIII	CATG	6 cut(s)	36, 126, 149, 158, 286, 518
NmeAIII	GCCGAG	1 cut(s)	799
NmuCI	GTSAC	1 cut(s)	185
NspI	RCATGY	1 cut(s)	286
PagI	TCATGA	1 cut(s)	514
PasI	CCCWGGG	1 cut(s)	394
PciSI	GCTCTTC	1 cut(s)	213
PcsI	WCGNNNNNNNCGW	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	736
PkrI	GCNGC	2 cut(s)	610, 772
PleI	GAGTC	3 cut(s)	325, 425, 561
PpsI	GAGTC	3 cut(s)	325, 425, 561
Psp6I	CCWGG	1 cut(s)	393
PspGI	CCWGG	1 cut(s)	393
PsuI	RGATCY	1 cut(s)	637
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
RseI	CAYNNNNRTG	1 cut(s)	587
SapI	GCTCTTC	1 cut(s)	213
SaqAI	TTAA	2 cut(s)	87, 573
SatI	GCNGC	2 cut(s)	609, 771
Sau3AI	GATC	3 cut(s)	250, 441, 637
SchI	GAGTC	3 cut(s)	326, 426, 561
ScrFI	CCNGG	1 cut(s)	395
SetI	ASST	9 cut(s)	121, 225, 231, 384, 459, 635, 714, 772, 796
SfaNI	GCATC	3 cut(s)	120, 160, 358
SfcI	CTRYAG	1 cut(s)	481
SmiMI	CAYNNNNRTG	1 cut(s)	587
SmlI	CTYRAG	2 cut(s)	68, 224
SmoI	CTYRAG	2 cut(s)	68, 224
Sse9I	AATT	7 cut(s)	46, 63, 103, 176, 270, 489, 677
SsiI	CCGC	1 cut(s)	267
SspMI	CTAG	1 cut(s)	458
StyD4I	CCNGG	1 cut(s)	393
TaaI	ACNGT	1 cut(s)	185
TaqI	TCGA	2 cut(s)	180, 838
TasI	AATT	7 cut(s)	46, 63, 103, 176, 270, 489, 677
TatI	WGTACW	1 cut(s)	279
TfiI	GAWTC	1 cut(s)	736
Tru1I	TTAA	2 cut(s)	87, 573
Tru9I	TTAA	2 cut(s)	87, 573
TscAI	CASTG	1 cut(s)	703
TseFI	GTSAC	1 cut(s)	185
TseI	GCWGC	2 cut(s)	608, 770
Tsp45I	GTSAC	1 cut(s)	185
TspDTI	ATGAA	4 cut(s)	111, 189, 531, 731
TspRI	CASTG	1 cut(s)	703
XapI	RAATTY	3 cut(s)	63, 176, 677
XceI	RCATGY	1 cut(s)	286
XspI	CTAG	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.