Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007891

Physical Location & Seq

Genomic Coordinates Reverse (-)

2950827 .. 2953530

Gene Structure 2704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G041200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCCCTGAAAGATTTTCATCTTAAGCAAAAGGCGTTGCAGCTGAAACGTTTTCTCATGGGAAGTGCTGGGAGGAAGAAAAGAGAGGTCACTAATGCAAAGAAACCGTCGTGGATGATGCCAGCAGTCTCACATGGATATTATACGACTGAGGCCTTTAAATCACCAGCTGGTTATGAAGATTCCGACTCTGACTTTGTTGTGGTTCAGAGAGAGCAAATTGAAGAGCTTGAGTTGTGGTTTTTCGGAGTTTTCAATGCTCGGATCGGTGACGGGGTTGCCAAGTACATGCAGTCTCATTTGTTTGACAAGAATCCTAAAGAGTCTCATGTAAGGGCAAAGAGCAAGGAGACAATGAGAAAGGCATATCTTGGTGCTAGAGCAAAGACTAGAGAGAGCACAGAGGACACACATGGAGTTGGTTCAGTTTCTGCGATAGTGATCGATGGGGAGAAGCTTGTATTAGCCAACATGGGTGACTATAGAGCAGTTGTGTGTAGAGATGGTTTGGCTCATCACATAGGCAGCAGGAACAATCAATCGGGCAAAAGACATTGGTCTCAGAGATTCTTTAAAGGCAATGCAGCAAGCACCAGGCAGTCTAAAACCTCAGACCTTGTTGTTGGGGCCGAAAGGGTTGAGCCTGATACTGAATTTGTCATTTTAGCAAGCAGTGGAATATGGGAGGTAATGAAGAATCAAGAGGCTGTGAATCTCATCAAGCACATTGAAAATCCACAAGCGGCTTCCGAGTGTTTGGCAAAGGAAGCTTCAAATAGAATGAGCAGAGGCAGCATTTCTTGCTTGGTCATTAGATTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 map04011

Pfam Domains

Protein Families

PP2C

Protein Analysis

275

Amino Acids

30.72

Weight (kDa)

9.4

Isoelectric Point (pI)

45.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23360
fragaria_vesca	FvH4_4g03890 FvH4_4g03890 FvH4_4g03890 FvH4_4g03890
malus_domestica	MD13G1215600.v1.1 MD16G1220800.v1.1
prunus_persica	Prupe.1G041200_v2.0.a1 Prupe.1G041200_v2.0.a1
pyrus_communis	pycom13g18910 pycom16g18520
rosa_chinensis	RchiOBHm_Chr4g0393921
rosa_laevigata	RLG00000009727
rosa_multiflora	Rmu_sc0000928.1_g000036
rosa_roxburghii	Rroxscaffold_5G00338990
rosa_rugosa	Rorug03G0370700.1 Rorug03G0370800 Rorug03G0370900.1 Rorug03G0371000.1
rosa_samantha	Rh4AG049500 Rh4BG045900 Rh4CG053000 Rh4DG046500
rosa_wichuraiana	Rw4G003920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	743
AclI	AACGTT	1 cut(s)	49
AclWI	GGATC	1 cut(s)	272
AcsI	RAATTY	1 cut(s)	653
AfaI	GTAC	1 cut(s)	287
AflII	CTTAAG	1 cut(s)	23
AgsI	TTSAA	4 cut(s)	224, 256, 731, 774
AjnI	CCWGG	1 cut(s)	593
AluBI	AGCT	5 cut(s)	43, 170, 229, 457, 770
AluI	AGCT	5 cut(s)	43, 170, 229, 457, 770
Alw21I	GWGCWC	1 cut(s)	401
Alw26I	GTCTC	5 cut(s)	133, 300, 330, 344, 564
AlwI	GGATC	1 cut(s)	272
AlwNI	CAGNNNCTG	1 cut(s)	431
AoxI	GGCC	3 cut(s)	3, 153, 627
ApeKI	GCWGC	4 cut(s)	40, 525, 584, 792
ApoI	RAATTY	1 cut(s)	653
ArsI	GACNNNNNNTTYG	4 cut(s)	92, 124, 179, 211
AspS9I	GGNCC	2 cut(s)	4, 627
AsuHPI	GGTGA	3 cut(s)	156, 281, 488
Bbv12I	GWGCWC	1 cut(s)	401
BbvI	GCAGC	4 cut(s)	52, 537, 596, 804
BccI	CCATC	2 cut(s)	440, 497
BciT130I	CCWGG	1 cut(s)	595
BcoDI	GTCTC	5 cut(s)	133, 300, 330, 344, 564
BfaI	CTAG	2 cut(s)	378, 390
BfmI	CTRYAG	1 cut(s)	481
BfrI	CTTAAG	1 cut(s)	23
BisI	GCNGC	5 cut(s)	41, 526, 585, 744, 793
BlsI	GCNGC	5 cut(s)	42, 527, 586, 745, 794
Bme1390I	CCNGG	1 cut(s)	595
BmgT120I	GGNCC	2 cut(s)	4, 627
BmiI	GGNNCC	1 cut(s)	628
BmrFI	CCNGG	1 cut(s)	595
BmsI	GCATC	1 cut(s)	108
BoxI	GACNNNNGTC	1 cut(s)	556
BpuEI	CTTGAG	1 cut(s)	251
Bsa29I	ATCGAT	1 cut(s)	444
BsaBI	GATNNNNATC	2 cut(s)	18, 440
BsaI	GGTCTC	1 cut(s)	564
Bse3DI	GCAATG	1 cut(s)	586
Bse8I	GATNNNNATC	2 cut(s)	18, 440
BseBI	CCWGG	1 cut(s)	595
BseCI	ATCGAT	1 cut(s)	444
BseGI	GGATG	1 cut(s)	120
BseJI	GATNNNNATC	2 cut(s)	18, 440
BseMI	GCAATG	1 cut(s)	586
BseMII	CTCAG	3 cut(s)	141, 575, 624
BseXI	GCAGC	4 cut(s)	52, 537, 596, 804
BseYI	CCCAGC	1 cut(s)	68
BshFI	GGCC	3 cut(s)	5, 155, 629
BshVI	ATCGAT	1 cut(s)	444
BsiHKAI	GWGCWC	1 cut(s)	401
BsmAI	GTCTC	5 cut(s)	133, 300, 330, 344, 564
BsnI	GGCC	3 cut(s)	5, 155, 629
Bso31I	GGTCTC	1 cut(s)	564
Bsp1286I	GDGCHC	1 cut(s)	401
Bsp143I	GATC	2 cut(s)	264, 441
BspACI	CCGC	1 cut(s)	743
BspANI	GGCC	3 cut(s)	5, 155, 629
BspCNI	CTCAG	3 cut(s)	142, 574, 623
BspDI	ATCGAT	1 cut(s)	444
BspLI	GGNNCC	1 cut(s)	628
BspPI	GGATC	1 cut(s)	272
BspQI	GCTCTTC	1 cut(s)	219
BspTI	CTTAAG	1 cut(s)	23
BspTNI	GGTCTC	1 cut(s)	564
BsrDI	GCAATG	1 cut(s)	586
BssMI	GATC	2 cut(s)	264, 441
Bst2UI	CCWGG	1 cut(s)	595
Bst4CI	ACNGT	1 cut(s)	108
Bst6I	CTCTTC	1 cut(s)	219
BstAFI	CTTAAG	1 cut(s)	23
BstAPI	GCANNNNNTGC	1 cut(s)	801
BstC8I	GCNNGC	3 cut(s)	123, 589, 670
BstDEI	CTNAG	3 cut(s)	150, 561, 610
BstF5I	GGATG	1 cut(s)	120
BstKTI	GATC	2 cut(s)	267, 444
BstMAI	GTCTC	5 cut(s)	133, 300, 330, 344, 564
BstMBI	GATC	2 cut(s)	264, 441
BstMWI	GCNNNNNNNGC	3 cut(s)	767, 792, 801
BstNI	CCWGG	1 cut(s)	595
BstNSI	RCATGY	1 cut(s)	292
BstPAI	GACNNNNGTC	1 cut(s)	556
BstSCI	CCNGG	1 cut(s)	593
BstSFI	CTRYAG	1 cut(s)	481
BstV1I	GCAGC	4 cut(s)	52, 537, 596, 804
Bsu15I	ATCGAT	1 cut(s)	444
BsuRI	GGCC	3 cut(s)	5, 155, 629
BsuTUI	ATCGAT	1 cut(s)	444
BtsCI	GGATG	1 cut(s)	120
BtsI	GCAGTG	1 cut(s)	679
BtsIMutI	CAGTG	1 cut(s)	679
Cac8I	GCNNGC	3 cut(s)	123, 589, 670
CaiI	CAGNNNCTG	1 cut(s)	431
Cfr13I	GGNCC	2 cut(s)	4, 627
ClaI	ATCGAT	1 cut(s)	444
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	6 cut(s)	58, 134, 289, 329, 413, 472
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	3 cut(s)	150, 561, 610
DpnI	GATC	2 cut(s)	266, 443
DpnII	GATC	2 cut(s)	264, 441
DraI	TTTAAA	2 cut(s)	160, 574
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
Eco147I	AGGCCT	1 cut(s)	155
Eco31I	GGTCTC	1 cut(s)	564
EcoRII	CCWGG	1 cut(s)	593
FaeI	CATG	6 cut(s)	61, 137, 292, 332, 416, 475
FatI	CATG	6 cut(s)	57, 133, 288, 328, 412, 471
Fnu4HI	GCNGC	5 cut(s)	41, 526, 585, 744, 793
FokI	GGATG	1 cut(s)	127
Fsp4HI	GCNGC	5 cut(s)	41, 526, 585, 744, 793
FspBI	CTAG	2 cut(s)	378, 390
GluI	GCNGC	5 cut(s)	41, 526, 585, 744, 793
GsaI	CCCAGC	1 cut(s)	72
HaeIII	GGCC	3 cut(s)	5, 155, 629
Hin1II	CATG	6 cut(s)	61, 137, 292, 332, 416, 475
HindIII	AAGCTT	2 cut(s)	455, 768
HinfI	GANTC	7 cut(s)	182, 188, 313, 323, 567, 697, 712
HphI	GGTGA	3 cut(s)	156, 281, 488
Hpy188I	TCNGA	8 cut(s)	187, 193, 210, 248, 264, 564, 613, 751
Hpy188III	TCNNGA	1 cut(s)	701
Hpy99I	CGWCG	1 cut(s)	112
HpyCH4III	ACNGT	1 cut(s)	108
HpyCH4IV	ACGT	1 cut(s)	49
HpyCH4V	TGCA	4 cut(s)	40, 98, 292, 584
HpyF10VI	GCNNNNNNNGC	3 cut(s)	767, 792, 801
HpyF3I	CTNAG	3 cut(s)	150, 561, 610
HpySE526I	ACGT	1 cut(s)	49
Hsp92II	CATG	6 cut(s)	61, 137, 292, 332, 416, 475
Kzo9I	GATC	2 cut(s)	264, 441
LguI	GCTCTTC	1 cut(s)	219
LpnPI	CCDG	9 cut(s)	20, 54, 135, 156, 180, 514, 580, 607, 657
Lsp1109I	GCAGC	4 cut(s)	52, 537, 596, 804
LweI	GCATC	1 cut(s)	108
MaeI	CTAG	2 cut(s)	378, 390
MaeII	ACGT	1 cut(s)	49
MaeIII	GTNAC	3 cut(s)	88, 269, 476
MalI	GATC	2 cut(s)	266, 443
MboI	GATC	2 cut(s)	264, 441
MboII	GAAGA	4 cut(s)	88, 191, 236, 706
MhlI	GDGCHC	1 cut(s)	401
MluCI	AATT	2 cut(s)	219, 653
MlyI	GAGTC	2 cut(s)	182, 332
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	8 cut(s)	66, 79, 145, 397, 619, 679, 697, 782
MseI	TTAA	3 cut(s)	24, 159, 573
MspA1I	CMGCKG	2 cut(s)	43, 170
MspCI	CTTAAG	1 cut(s)	23
MspR9I	CCNGG	1 cut(s)	595
MvaI	CCWGG	1 cut(s)	595
MwoI	GCNNNNNNNGC	3 cut(s)	767, 792, 801
NdeII	GATC	2 cut(s)	264, 441
NlaIII	CATG	6 cut(s)	61, 137, 292, 332, 416, 475
NlaIV	GGNNCC	1 cut(s)	628
NmuCI	GTSAC	3 cut(s)	88, 269, 476
NspI	RCATGY	1 cut(s)	292
PceI	AGGCCT	1 cut(s)	155
PciSI	GCTCTTC	1 cut(s)	219
PfeI	GAWTC	5 cut(s)	182, 313, 567, 697, 712
PkrI	GCNGC	5 cut(s)	42, 527, 586, 745, 794
PleI	GAGTC	2 cut(s)	182, 331
PpsI	GAGTC	2 cut(s)	182, 331
PshAI	GACNNNNGTC	1 cut(s)	556
Psp1406I	AACGTT	1 cut(s)	49
Psp6I	CCWGG	1 cut(s)	593
PspFI	CCCAGC	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	593
PspN4I	GGNNCC	1 cut(s)	628
PspPI	GGNCC	2 cut(s)	4, 627
PstNI	CAGNNNCTG	1 cut(s)	431
PvuII	CAGCTG	2 cut(s)	43, 170
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
SapI	GCTCTTC	1 cut(s)	219
SaqAI	TTAA	3 cut(s)	24, 159, 573
SatI	GCNGC	5 cut(s)	41, 526, 585, 744, 793
Sau3AI	GATC	2 cut(s)	264, 441
Sau96I	GGNCC	2 cut(s)	4, 627
SchI	GAGTC	2 cut(s)	182, 332
ScrFI	CCNGG	1 cut(s)	595
SduI	GDGCHC	1 cut(s)	401
SfaNI	GCATC	1 cut(s)	108
SfcI	CTRYAG	1 cut(s)	481
SmlI	CTYRAG	2 cut(s)	23, 230
SmoI	CTYRAG	2 cut(s)	23, 230
Sse9I	AATT	2 cut(s)	219, 653
SseBI	AGGCCT	1 cut(s)	155
SsiI	CCGC	1 cut(s)	743
SspMI	CTAG	2 cut(s)	378, 390
StuI	AGGCCT	1 cut(s)	155
StyD4I	CCNGG	1 cut(s)	593
TaaI	ACNGT	1 cut(s)	108
TaiI	ACGT	1 cut(s)	52
TaqI	TCGA	1 cut(s)	444
TasI	AATT	2 cut(s)	219, 653
TatI	WGTACW	1 cut(s)	285
TauI	GCSGC	1 cut(s)	746
TfiI	GAWTC	5 cut(s)	182, 313, 567, 697, 712
Tru1I	TTAA	3 cut(s)	24, 159, 573
Tru9I	TTAA	3 cut(s)	24, 159, 573
TscAI	CASTG	1 cut(s)	679
TseFI	GTSAC	3 cut(s)	88, 269, 476
TseI	GCWGC	4 cut(s)	40, 525, 584, 792
Tsp45I	GTSAC	3 cut(s)	88, 269, 476
TspDTI	ATGAA	3 cut(s)	8, 192, 707
TspRI	CASTG	1 cut(s)	679
Vha464I	CTTAAG	1 cut(s)	23
XapI	RAATTY	1 cut(s)	653
XceI	RCATGY	1 cut(s)	292
XspI	CTAG	2 cut(s)	378, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.